Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004298

Physical Location & Seq

Genomic Coordinates Reverse (-)

26586243 .. 26599822

Gene Structure 13580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG133300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTTTTTCATGCAGCGCAAAAAGGTTCTGGACATTAGTGAGGTTCAGACCTATGTGATAAACAGTGTTAGAGTTGTCTTCTTGAATGAGAGGCCTCAACCAAAAGTTGGAATCAAAGGAGTCCTCCACATTTGCTTAATCCTACTTCGGCTATTATGTACAGCACCAAAGAGAATAGAAGACAAAGGGAGGGATTATGGAAAATACATCAGATCAGGGGAGCATGTATGGTTCATGAGAGAGGCTGGATCAGCTGAGAGCCAACGTGGAACAATTGTCTTCCTTCACGGGGCTTCCACTCAGTCTTATACCTACAGAAATGTTATGTCTCAGAAGCTAAGTAACAGACACTGTGTGGCAGTGGATTCAGGAGCACAGGAAGTGATTGCATATGAAGGAGAGGCCATTTTAGAACCATACGAGGGTATGGAATTTGAATCTGAAGATGCTGCAAAGATATTTTATGATGACTATGCCAGACGCCTTGGATTTGTCATGCGTGTCATGTCATGTCGTCGATCCGAAAGAGATGGTAGGATTCTCGCTCGTCGACTTGGCTGTAATAAGGAAGGTCACTGTGTTAGTATTCGAGGTAAATTTGGACCCGTCAGAAAACCGCGAGCCAGTACAAGGGAGGGTTGTAAGGCAATGATTCATGTCAAGTATGATAAATCTGGTAAATGGGTGATTACAAAATTTGTTAAGGAACATAACCATTCACTTGTGGTGTCTCCACGTGAAGCACGTCAAACAATGGATGAGAAGGATAAGAAAATTCAAGAATTATCTGCAGAGCTTCGGAATAAGAAACGCTTGTGTACAACATATCAAGAACAGCTAACAGCATTTATGAAAATTGTTGAAGAGTATAATGACCAGCTATCCTTGAAAGTGAAAAATGTAGTTAACAATCTTAAAGAATTCGAATCCATAGATGTGGAGCTTACGCAGCGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

319

Amino Acids

36.86

Weight (kDa)

9.42

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLATZ	PF04640	7 - 52	9.8e-10	PLATZ transcription factor
FAR1	PF03101	154 - 242	5.9e-28	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43280 AT2G43280
fragaria_vesca	FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892
malus_domestica	MD04G1042000.v1.1 MD04G1042100.v1.1
prunus_persica	Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1
pyrus_communis	pycom04g03700
rosa_chinensis	RchiOBHm_Chr4g0406491
rosa_multiflora	Rmu_ssc0000186.1_g000028
rosa_roxburghii	Rroxscaffold_5G00351400
rosa_rugosa	Rorug04G0072000
rosa_samantha	Rh4AG138900 Rh4BG135900 Rh4CG146200 Rh4DG133300
rosa_wichuraiana	Rw4G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	1 cut(s)	619
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	2 cut(s)	256, 513
AcsI	RAATTY	5 cut(s)	431, 596, 695, 774, 920
AcuI	CTGAAG	1 cut(s)	462
AcvI	CACGTG	1 cut(s)	737
AcyI	GRCGYC	1 cut(s)	481
AdeI	CACNNNGTG	1 cut(s)	355
AfaI	GTAC	3 cut(s)	160, 628, 820
AfiI	CCNNNNNNNGG	4 cut(s)	107, 289, 422, 630
AgsI	TTSAA	5 cut(s)	85, 437, 779, 863, 889
AjiI	CACGTC	1 cut(s)	746
AluBI	AGCT	6 cut(s)	254, 337, 796, 838, 880, 943
AluI	AGCT	6 cut(s)	254, 337, 796, 838, 880, 943
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	333, 735
AlwI	GGATC	2 cut(s)	256, 513
AlwNI	CAGNNNCTG	1 cut(s)	351
AoxI	GGCC	2 cut(s)	92, 402
ApeKI	GCWGC	3 cut(s)	13, 449, 949
ApoI	RAATTY	5 cut(s)	431, 596, 695, 774, 920
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	1 cut(s)	697
AsuII	TTCGAA	1 cut(s)	924
AvaII	GGWCC	1 cut(s)	602
BbrPI	CACGTG	1 cut(s)	737
BbsI	GAAGAC	3 cut(s)	70, 186, 271
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	25, 436
BccI	CCATC	1 cut(s)	524
BcoDI	GTCTC	2 cut(s)	333, 735
BfmI	CTRYAG	2 cut(s)	313, 789
BisI	GCNGC	3 cut(s)	14, 450, 950
BlsI	GCNGC	3 cut(s)	15, 451, 951
Bme18I	GGWCC	1 cut(s)	602
BmgBI	CACGTC	1 cut(s)	746
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	604
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	3 cut(s)	70, 186, 271
Bpu14I	TTCGAA	1 cut(s)	924
BsaAI	YACGTR	1 cut(s)	737
BsaHI	GRCGYC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 289, 422, 630
Bse1I	ACTGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	1 cut(s)	763
BseLI	CCNNNNNNNGG	4 cut(s)	107, 289, 422, 630
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	3 cut(s)	246, 314, 344
BseNI	ACTGG	1 cut(s)	624
BseXI	GCAGC	2 cut(s)	25, 436
Bsh1236I	CGCG	1 cut(s)	619
BshFI	GGCC	2 cut(s)	94, 404
BsiHKAI	GWGCWC	1 cut(s)	376
BslI	CCNNNNNNNGG	4 cut(s)	107, 289, 422, 630
BsmAI	GTCTC	2 cut(s)	333, 735
BsnI	GGCC	2 cut(s)	94, 404
Bsp119I	TTCGAA	1 cut(s)	924
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp1407I	TGTACA	2 cut(s)	158, 818
Bsp143I	GATC	3 cut(s)	212, 248, 518
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	2 cut(s)	94, 404
BspCNI	CTCAG	3 cut(s)	247, 313, 343
BspFNI	CGCG	1 cut(s)	619
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	604
BspMAI	CTGCAG	1 cut(s)	793
BspPI	GGATC	2 cut(s)	256, 513
BspT104I	TTCGAA	1 cut(s)	924
BsrDI	GCAATG	1 cut(s)	654
BsrGI	TGTACA	2 cut(s)	158, 818
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	3 cut(s)	212, 248, 518
BssNI	GRCGYC	1 cut(s)	481
BssT1I	CCWWGG	1 cut(s)	484
Bst4CI	ACNGT	3 cut(s)	65, 353, 578
Bst6I	CTCTTC	1 cut(s)	858
BstACI	GRCGYC	1 cut(s)	481
BstAUI	TGTACA	2 cut(s)	158, 818
BstBAI	YACGTR	1 cut(s)	737
BstBI	TTCGAA	1 cut(s)	924
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	4 cut(s)	255, 300, 330, 338
BstF5I	GGATG	1 cut(s)	763
BstFNI	CGCG	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	3 cut(s)	215, 251, 521
BstMAI	GTCTC	2 cut(s)	333, 735
BstMBI	GATC	3 cut(s)	212, 248, 518
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 949
BstNSI	RCATGY	1 cut(s)	227
BstSFI	CTRYAG	2 cut(s)	313, 789
BstUI	CGCG	1 cut(s)	619
BstV1I	GCAGC	2 cut(s)	25, 436
BstV2I	GAAGAC	3 cut(s)	70, 186, 271
BstXI	CCANNNNNNTGG	1 cut(s)	937
BsuRI	GGCC	2 cut(s)	94, 404
BtrI	CACGTC	1 cut(s)	746
BtsCI	GGATG	1 cut(s)	763
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	4 cut(s)	70, 349, 366, 574
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	3 cut(s)	159, 627, 819
CviAII	CATG	7 cut(s)	10, 224, 235, 496, 505, 510, 656
CviQI	GTAC	3 cut(s)	159, 627, 819
DdeI	CTNAG	4 cut(s)	255, 300, 330, 338
DpnI	GATC	3 cut(s)	214, 250, 520
DpnII	GATC	3 cut(s)	212, 248, 518
DraIII	CACNNNGTG	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	484
Eco147I	AGGCCT	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	462
Eco72I	CACGTG	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	920
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	7 cut(s)	13, 227, 238, 499, 508, 513, 659
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FatI	CATG	7 cut(s)	9, 223, 234, 495, 504, 509, 655
FauNDI	CATATG	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	3 cut(s)	14, 450, 950
FokI	GGATG	1 cut(s)	770
Fsp4HI	GCNGC	3 cut(s)	14, 450, 950
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	3 cut(s)	14, 450, 950
HaeIII	GGCC	2 cut(s)	94, 404
HgaI	GACGC	1 cut(s)	489
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	481
Hin1II	CATG	7 cut(s)	13, 227, 238, 499, 508, 513, 659
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	2 cut(s)	551, 907
HindII	GTYRAC	2 cut(s)	551, 907
HinfI	GANTC	7 cut(s)	111, 120, 365, 437, 538, 652, 926
HpaI	GTTAAC	1 cut(s)	907
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	3 cut(s)	551, 819, 907
Hpy188I	TCNGA	7 cut(s)	48, 212, 333, 442, 523, 611, 801
Hpy188III	TCNNGA	6 cut(s)	29, 82, 235, 369, 779, 830
Hpy8I	GTNNAC	3 cut(s)	551, 819, 907
Hpy99I	CGWCG	2 cut(s)	519, 552
HpyAV	CCTTC	4 cut(s)	293, 389, 563, 757
HpyCH4III	ACNGT	3 cut(s)	65, 353, 578
HpyCH4IV	ACGT	3 cut(s)	265, 736, 745
HpyCH4V	TGCA	4 cut(s)	13, 389, 452, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 949
HpyF3I	CTNAG	4 cut(s)	255, 300, 330, 338
HpySE526I	ACGT	3 cut(s)	265, 736, 745
Hsp92I	GRCGYC	1 cut(s)	481
Hsp92II	CATG	7 cut(s)	13, 227, 238, 499, 508, 513, 659
HspAI	GCGC	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	907
Kzo9I	GATC	3 cut(s)	212, 248, 518
LmnI	GCTCC	3 cut(s)	220, 371, 940
LpnPI	CCDG	9 cut(s)	14, 201, 231, 354, 362, 490, 637, 660, 890
Lsp1109I	GCAGC	2 cut(s)	25, 436
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	3 cut(s)	265, 736, 745
MaeIII	GTNAC	2 cut(s)	341, 572
MalI	GATC	3 cut(s)	214, 250, 520
MboI	GATC	3 cut(s)	212, 248, 518
MboII	GAAGA	5 cut(s)	70, 191, 271, 455, 875
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	8 cut(s)	273, 431, 596, 695, 774, 782, 855, 920
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	88
MseI	TTAA	4 cut(s)	137, 702, 906, 915
MslI	CAYNNNNRTG	1 cut(s)	935
MspA1I	CMGCKG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	619
MwoI	GCNNNNNNNGC	2 cut(s)	251, 949
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	3 cut(s)	212, 248, 518
NlaIII	CATG	7 cut(s)	13, 227, 238, 499, 508, 513, 659
NlaIV	GGNNCC	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	572
NspI	RCATGY	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	924
PagI	TCATGA	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	742
PfeI	GAWTC	6 cut(s)	111, 365, 437, 538, 652, 926
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	3 cut(s)	15, 451, 951
PleI	GAGTC	1 cut(s)	128
PmaCI	CACGTG	1 cut(s)	737
PmlI	CACGTG	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	737
PspCI	CACGTG	1 cut(s)	737
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	793
PstNI	CAGNNNCTG	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	3 cut(s)	160, 628, 820
RsaNI	GTAC	3 cut(s)	159, 627, 819
RseI	CAYNNNNRTG	1 cut(s)	935
SalI	GTCGAC	1 cut(s)	549
SaqAI	TTAA	4 cut(s)	137, 702, 906, 915
SatI	GCNGC	3 cut(s)	14, 450, 950
Sau3AI	GATC	3 cut(s)	212, 248, 518
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	2 cut(s)	313, 789
SfuI	TTCGAA	1 cut(s)	924
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	935
Sse9I	AATT	8 cut(s)	273, 431, 596, 695, 774, 782, 855, 920
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	1 cut(s)	617
StuI	AGGCCT	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	65, 353, 578
TaiI	ACGT	3 cut(s)	268, 739, 748
TaqI	TCGA	4 cut(s)	517, 550, 589, 924
TasI	AATT	8 cut(s)	273, 431, 596, 695, 774, 782, 855, 920
TatI	WGTACW	3 cut(s)	158, 626, 818
TfiI	GAWTC	6 cut(s)	111, 365, 437, 538, 652, 926
Tru1I	TTAA	4 cut(s)	137, 702, 906, 915
Tru9I	TTAA	4 cut(s)	137, 702, 906, 915
TscAI	CASTG	4 cut(s)	70, 356, 366, 581
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	3 cut(s)	13, 449, 949
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	4 cut(s)	223, 408, 644, 866
TspRI	CASTG	4 cut(s)	70, 356, 366, 581
Van91I	CCANNNNNTGG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	5 cut(s)	431, 596, 695, 774, 920
XceI	RCATGY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.