Rorug04G0072000

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001037
Physical Location & Seq
Reverse (-)
11051799 .. 11057887
6089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0072000.1

Sequence Viewer

Length: 1149 bp
ATGAGAAAGAAGGGGATATCTCTCAGTATGGCATGTTTAGAGAGAGCCTCCCCAGCTTTGAAGGAAATCCTGCTCAAAATATACCACAGTGCCAACAAGTCCACAGAGATTGATCATCACTTGTATGAATTTGGGTCTGTGGAATACCATATCCAGTCATCAGCTTCAGATGAACACATTACATACTTGTCAATATCAACTCCACTACTTACCCAAGAAGTCCTGTTACCATATGGGTTTTCACATCGTACCAAACAGATGGTAACAGCAATTTGTCCTGATGCTGTTGAGATCATTGAACCTGCAAAAGAAGGATACCAGATTACTTTAAGGCTTGATTTTGCTAAATTGCCAAACGGAAAAGAGTCACTGAAGGTAATTGCTGAGATTTCTGCTGTGCAAGCAAGAATATTAAGTTCTCGGCTTAAAGAAATTTTGATGAATGTCAACTCCCAAGATTCATATCAAGGGATGTATAAGCCAATCAAGCTTGTGTATCGCCCAAGTGAGCCTTTCTTCATAATTATACAGCCACAGAAAATCATAGCAGTATTCCCCATACATTTTACAGACAAACCAGATGTCATTATCGCAACAACCTTCTTTCAGGAACTTATGGATGTTGGAAGCTCTGAAAAATGGGCCAAAGCACCTCCTTGTTGCTGGTCACCAATTCCACCTCCAGAGTTAAGAGGGGAACTTTTTGAAGACTTGAGTACTACAGGAGGATTTGTGTCTTTTGAGATTTCTCCAAGGCATGTCAAAGGTAAAAAGCTGGACAAGACAGTATGGAGCTTATTGAATTTCTATGCCTATGTTAAATTCCATGTAAAGAGTACCAGAAGTTTTATTCAGAGAAGGATGAGAAAGCGTTTGGAGGGACTAGTTGAGCTCCTTCATAAGCGCAACATAAAAGTCGAAGATGAAGAAGAAGAAAAGCGAAGACACAAGATTCAAGGATTCAAGTGTACGATAAAGATAGCCAATCTACCAAAACTTTCTGTCCTTAAACGAAGATATAATGGATTCAGCAGGACGATCAAGAGAATCCGATCTCGAATTAGAATCCATGGATTCGGGCGATTTCGTCACCGATGGTTGAAAATACCAAAGTTCTCTTCTTCAATGGGGTATACCAAATTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

382

Amino Acids

44.22

Weight (kDa)

9.78

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
P34-Arc PF04045 100 - 301 4.3e-31 Arp2/3 complex, 34 kD subunit p34-Arc
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AccI GTMKAC 1 cut(s) 1133
AcsI RAATTY 4 cut(s) 128, 432, 802, 821
AcuI CTGAAG 2 cut(s) 150, 392
AfaI GTAC 4 cut(s) 250, 718, 838, 970
AgsI TTSAA 8 cut(s) 61, 299, 707, 802, 956, 964, 1102, 1125
AhlI ACTAGT 1 cut(s) 883
AjuI GAANNNNNNNTTGG 2 cut(s) 1102, 1134
AluBI AGCT 7 cut(s) 56, 164, 490, 630, 775, 795, 892
AluI AGCT 7 cut(s) 56, 164, 490, 630, 775, 795, 892
Alw21I GWGCWC 1 cut(s) 894
AoxI GGCC 1 cut(s) 642
ApoI RAATTY 4 cut(s) 128, 432, 802, 821
ArsI GACNNNNNNTTYG 2 cut(s) 567, 599
AspLEI GCGC 1 cut(s) 906
AspS9I GGNCC 1 cut(s) 642
AsuHPI GGTGA 2 cut(s) 660, 1082
BanII GRGCYC 1 cut(s) 894
BarI GAAGNNNNNNTAC 2 cut(s) 210, 242
BbsI GAAGAC 2 cut(s) 714, 949
Bbv12I GWGCWC 1 cut(s) 894
BccI CCATC 2 cut(s) 253, 1089
BciVI GTATCC 1 cut(s) 308
BclI TGATCA 1 cut(s) 112
BcuI ACTAGT 1 cut(s) 883
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 1 cut(s) 720
BfuAI ACCTGC 1 cut(s) 310
BfuI GTATCC 1 cut(s) 308
BmcAI AGTACT 1 cut(s) 718
BmgT120I GGNCC 1 cut(s) 642
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 2 cut(s) 714, 949
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 733
BsaBI GATNNNNATC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 752, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bse1I ACTGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 752, 1069
BseGI GGATG 3 cut(s) 477, 625, 867
BseJI GATNNNNATC 1 cut(s) 462
BseMII CTCAG 2 cut(s) 37, 375
BseNI ACTGG 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 52
BshFI GGCC 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 894
BslFI GGGAC 1 cut(s) 894
BsmFI GGGAC 1 cut(s) 894
BsnI GGCC 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 894
Bsp143I GATC 4 cut(s) 112, 291, 1038, 1052
Bsp19I CCATGG 1 cut(s) 1069
BspANI GGCC 1 cut(s) 644
BspCNI CTCAG 2 cut(s) 36, 376
BspMI ACCTGC 1 cut(s) 310
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 752, 1069
BssMI GATC 4 cut(s) 112, 291, 1038, 1052
BssNAI GTATAC 1 cut(s) 1134
BssT1I CCWWGG 2 cut(s) 752, 1069
Bst1107I GTATAC 1 cut(s) 1134
Bst4CI ACNGT 2 cut(s) 89, 787
Bst6I CTCTTC 1 cut(s) 1123
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 2 cut(s) 23, 384
BstDSI CCRYGG 1 cut(s) 1069
BstEII GGTNACC 1 cut(s) 666
BstF5I GGATG 3 cut(s) 477, 625, 867
BstHHI GCGC 1 cut(s) 906
BstKTI GATC 4 cut(s) 115, 294, 1041, 1055
BstMBI GATC 4 cut(s) 112, 291, 1038, 1052
BstMWI GCNNNNNNNGC 3 cut(s) 53, 401, 487
BstNSI RCATGY 2 cut(s) 36, 761
BstPI GGTNACC 1 cut(s) 666
BstSFI CTRYAG 1 cut(s) 720
BstV2I GAAGAC 2 cut(s) 714, 949
BstXI CCANNNNNNTGG 1 cut(s) 259
BstZ17I GTATAC 1 cut(s) 1134
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 644
BtgI CCRYGG 1 cut(s) 1069
BtsCI GGATG 3 cut(s) 477, 625, 867
BtsIMutI CAGTG 2 cut(s) 94, 368
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 1 cut(s) 906
Cfr13I GGNCC 1 cut(s) 642
Csp6I GTAC 4 cut(s) 249, 717, 837, 969
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CviAII CATG 4 cut(s) 33, 758, 827, 1070
CviQI GTAC 4 cut(s) 249, 717, 837, 969
DdeI CTNAG 2 cut(s) 23, 384
DpnI GATC 4 cut(s) 114, 293, 1040, 1054
DpnII GATC 4 cut(s) 112, 291, 1038, 1052
Eam1104I CTCTTC 1 cut(s) 1123
EarI CTCTTC 1 cut(s) 1123
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 2 cut(s) 752, 1069
Eco24I GRGCYC 1 cut(s) 894
Eco32I GATATC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 2 cut(s) 150, 392
Eco91I GGTNACC 1 cut(s) 666
EcoICRI GAGCTC 1 cut(s) 892
EcoO65I GGTNACC 1 cut(s) 666
EcoRV GATATC 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 752, 1069
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 2 cut(s) 752, 1069
FaeI CATG 4 cut(s) 36, 761, 830, 1073
FalI AAGNNNNNCTT 2 cut(s) 496, 528
FaqI GGGAC 1 cut(s) 894
FatI CATG 4 cut(s) 32, 757, 826, 1069
FauNDI CATATG 1 cut(s) 232
FbaI TGATCA 1 cut(s) 112
FblI GTMKAC 1 cut(s) 1133
FokI GGATG 3 cut(s) 484, 632, 874
FriOI GRGCYC 1 cut(s) 894
FspBI CTAG 1 cut(s) 884
GlaI GCGC 1 cut(s) 905
GsaI CCCAGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 1 cut(s) 644
HhaI GCGC 1 cut(s) 906
Hin1II CATG 4 cut(s) 36, 761, 830, 1073
Hin6I GCGC 1 cut(s) 904
HinP1I GCGC 1 cut(s) 904
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 8 cut(s) 365, 458, 952, 960, 1026, 1047, 1065, 1074
HphI GGTGA 2 cut(s) 660, 1082
Hpy166II GTNNAC 4 cut(s) 102, 448, 969, 1134
Hpy188I TCNGA 4 cut(s) 169, 634, 855, 1052
Hpy188III TCNNGA 5 cut(s) 278, 608, 683, 1042, 1056
Hpy8I GTNNAC 4 cut(s) 102, 448, 969, 1134
HpyAV CCTTC 7 cut(s) 4, 55, 305, 367, 610, 852, 905
HpyCH4III ACNGT 2 cut(s) 89, 787
HpyCH4V TGCA 2 cut(s) 305, 400
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 401, 487
HpyF3I CTNAG 2 cut(s) 23, 384
Hsp92II CATG 4 cut(s) 36, 761, 830, 1073
HspAI GCGC 1 cut(s) 904
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 4 cut(s) 112, 291, 1038, 1052
LmnI GCTCC 2 cut(s) 792, 897
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 884
MaeIII GTNAC 5 cut(s) 225, 262, 366, 666, 1088
MalI GATC 4 cut(s) 114, 293, 1040, 1054
MboI GATC 4 cut(s) 112, 291, 1038, 1052
MhlI GDGCHC 1 cut(s) 894
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 6 cut(s) 58, 663, 686, 690, 719, 871
MseI TTAA 6 cut(s) 329, 413, 426, 689, 819, 1008
MslI CAYNNNNRTG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 53, 401, 487
NcoI CCATGG 1 cut(s) 1069
NdeI CATATG 1 cut(s) 232
NdeII GATC 4 cut(s) 112, 291, 1038, 1052
NlaIII CATG 4 cut(s) 36, 761, 830, 1073
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 3 cut(s) 366, 666, 1088
NspI RCATGY 2 cut(s) 36, 761
PfeI GAWTC 7 cut(s) 458, 952, 960, 1026, 1047, 1065, 1074
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 894
PspEI GGTNACC 1 cut(s) 666
PspFI CCCAGC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 642
RsaI GTAC 4 cut(s) 250, 718, 838, 970
RsaNI GTAC 4 cut(s) 249, 717, 837, 969
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 6 cut(s) 329, 413, 426, 689, 819, 1008
Sau3AI GATC 4 cut(s) 112, 291, 1038, 1052
Sau96I GGNCC 1 cut(s) 642
ScaI AGTACT 1 cut(s) 718
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 1 cut(s) 894
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
SpeI ACTAGT 1 cut(s) 883
SspI AATATT 1 cut(s) 411
SspMI CTAG 1 cut(s) 884
SstI GAGCTC 1 cut(s) 894
StyI CCWWGG 2 cut(s) 752, 1069
TaaI ACNGT 2 cut(s) 89, 787
TaqI TCGA 2 cut(s) 918, 1057
TatI WGTACW 1 cut(s) 716
TfiI GAWTC 7 cut(s) 458, 952, 960, 1026, 1047, 1065, 1074
Tru1I TTAA 6 cut(s) 329, 413, 426, 689, 819, 1008
Tru9I TTAA 6 cut(s) 329, 413, 426, 689, 819, 1008
TscAI CASTG 2 cut(s) 94, 375
TseFI GTSAC 3 cut(s) 366, 666, 1088
Tsp45I GTSAC 3 cut(s) 366, 666, 1088
TspDTI ATGAA 7 cut(s) 141, 186, 450, 455, 508, 887, 939
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 2 cut(s) 94, 375
XapI RAATTY 4 cut(s) 128, 432, 802, 821
XceI RCATGY 2 cut(s) 36, 761
XmiI GTMKAC 1 cut(s) 1133
XspI CTAG 1 cut(s) 884
ZrmI AGTACT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.