Rmu_co8349065.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8349065.1
OG0001037
Physical Location & Seq
Forward (+)
1 .. 1035
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8349065.1_g000001.1.cds

Sequence Viewer

Length: 641 bp
gttcgataggcactgatcagggaaaaccagtcattttcattgcagaatttacttatgattccctgaatttgcatatttttgcagtggattcggtacttgatataaatgttaatgaggaggtgtcaactggttcaactgataccgagttcaagcattctaatgatggtgccttggtaggcacttctcttcagaagatactttgggttgtacaaaatgatgaaagaactcaaaactcttctaaagatggatctgtagtcgaggtagatgagccatatgtgggtcaggaatttgatacagaagtaaatgcacaggcattttataatgtctatggcttgcgtatgggtttcaatactcgtatgaactatctgtctcgatccaaacatgatggaactatcattgcacgaacatttgtatgcagcaaagagggttaccggaagcctgataggcgtgacaagaagactgtaaacccacgcgctcccactagggtaggttgtatggcaatgctgtcgataaaaaaactgaatattggcaagtgggttgttactaagtttatcaaggagcacaatcatgcattgatagcgagcaaacgtccaaaagggttgattgaggatcaaataccggtcagttattgtgatattcta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

213

Amino Acids

23.95

Weight (kDa)

6.94

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 166
AccII CGCG 1 cut(s) 473
AclWI GGATC 3 cut(s) 255, 368, 617
AcsI RAATTY 3 cut(s) 46, 66, 286
AcuI CTGAAG 1 cut(s) 172
AfaI GTAC 2 cut(s) 95, 209
AfiI CCNNNNNNNGG 1 cut(s) 277
AgeI ACCGGT 1 cut(s) 618
AgsI TTSAA 3 cut(s) 134, 150, 348
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 3 cut(s) 255, 368, 617
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 3 cut(s) 46, 66, 286
AsiGI ACCGGT 1 cut(s) 618
AspLEI GCGC 1 cut(s) 475
BaeI ACNNNNGTAYC 2 cut(s) 284, 317
BanI GGYRCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 1 cut(s) 428
BccI CCATC 3 cut(s) 157, 238, 379
BcgI CGANNNNNNTGC 4 cut(s) 71, 105, 488, 522
BclI TGATCA 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 251
BglI GCCNNNNNGGC 1 cut(s) 444
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 170
BsaWI WCCGGW 2 cut(s) 431, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse118I RCCGGY 1 cut(s) 618
Bse1I ACTGG 2 cut(s) 28, 132
Bse3DI GCAATG 3 cut(s) 38, 395, 506
BseDI CCNNGG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 3 cut(s) 38, 395, 506
BseNI ACTGG 2 cut(s) 28, 132
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 473
BshNI GGYRCC 1 cut(s) 166
BshTI ACCGGT 1 cut(s) 618
BsiHKAI GWGCWC 1 cut(s) 563
BsiSI CCGG 2 cut(s) 432, 619
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 374
BsmI GAATGC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 563
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 4 cut(s) 15, 247, 373, 609
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 3 cut(s) 255, 368, 617
BspT107I GGYRCC 1 cut(s) 166
BsrDI GCAATG 3 cut(s) 38, 395, 506
BsrFI RCCGGY 1 cut(s) 618
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 2 cut(s) 28, 132
BssAI RCCGGY 1 cut(s) 618
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 4 cut(s) 15, 247, 373, 609
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 462
Bst6I CTCTTC 2 cut(s) 191, 240
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 334, 582
BstDEI CTNAG 1 cut(s) 545
BstEII GGTNACC 1 cut(s) 427
BstFNI CGCG 1 cut(s) 473
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 4 cut(s) 18, 250, 376, 612
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 4 cut(s) 15, 247, 373, 609
BstMWI GCNNNNNNNGC 2 cut(s) 444, 577
BstPI GGTNACC 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 251
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 428
BstV2I GAAGAC 1 cut(s) 463
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 11, 89
Cac8I GCNNGC 2 cut(s) 334, 582
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 618
Csp6I GTAC 2 cut(s) 94, 208
CspAI ACCGGT 1 cut(s) 618
CviAII CATG 2 cut(s) 382, 568
CviJI RGCY 3 cut(s) 270, 332, 438
CviKI_1 RGCY 3 cut(s) 270, 332, 438
CviQI GTAC 2 cut(s) 94, 208
DdeI CTNAG 1 cut(s) 545
DpnI GATC 4 cut(s) 17, 249, 375, 611
DpnII GATC 4 cut(s) 15, 247, 373, 609
Eam1104I CTCTTC 2 cut(s) 191, 240
EarI CTCTTC 2 cut(s) 191, 240
Eco130I CCWWGG 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 385, 571
FatI CATG 2 cut(s) 381, 567
FauNDI CATATG 1 cut(s) 273
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 482
GlaI GCGC 1 cut(s) 474
GluI GCNGC 1 cut(s) 417
HapII CCGG 2 cut(s) 432, 619
HhaI GCGC 1 cut(s) 475
Hin1II CATG 2 cut(s) 385, 571
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HinfI GANTC 2 cut(s) 58, 88
HpaII CCGG 2 cut(s) 432, 619
Hpy166II GTNNAC 2 cut(s) 125, 465
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 2 cut(s) 283, 371
Hpy8I GTNNAC 2 cut(s) 125, 465
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 7 cut(s) 43, 72, 82, 307, 400, 416, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 444, 577
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 2 cut(s) 385, 571
HspAI GCGC 1 cut(s) 473
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 4 cut(s) 15, 247, 373, 609
LmnI GCTCC 2 cut(s) 480, 558
LpnPI CCDG 9 cut(s) 4, 41, 76, 113, 268, 295, 445, 452, 632
Lsp1109I GCAGC 1 cut(s) 428
MaeI CTAG 1 cut(s) 482
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 3 cut(s) 427, 448, 540
MalI GATC 4 cut(s) 17, 249, 375, 611
MboI GATC 4 cut(s) 15, 247, 373, 609
MboII GAAGA 4 cut(s) 178, 204, 227, 468
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 563
MluCI AATT 3 cut(s) 46, 66, 286
MnlI CCTC 5 cut(s) 108, 111, 252, 417, 600
Mph1103I ATGCAT 1 cut(s) 573
MseI TTAA 1 cut(s) 110
MslI CAYNNNNRTG 3 cut(s) 158, 411, 566
MspI CCGG 2 cut(s) 432, 619
Mva1269I GAATGC 1 cut(s) 153
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 444, 577
NdeI CATATG 1 cut(s) 273
NdeII GATC 4 cut(s) 15, 247, 373, 609
NlaIII CATG 2 cut(s) 385, 571
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 573
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 58, 88
PinAI ACCGGT 1 cut(s) 618
PkrI GCNGC 1 cut(s) 418
PsiI TTATAA 1 cut(s) 320
PspEI GGTNACC 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 2 cut(s) 95, 209
RsaNI GTAC 2 cut(s) 94, 208
RseI CAYNNNNRTG 3 cut(s) 158, 411, 566
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 4 cut(s) 15, 247, 373, 609
SduI GDGCHC 1 cut(s) 563
SetI ASST 4 cut(s) 122, 263, 492, 591
SfcI CTRYAG 1 cut(s) 251
SmiMI CAYNNNNRTG 3 cut(s) 158, 411, 566
Sse9I AATT 3 cut(s) 46, 66, 286
SspI AATATT 1 cut(s) 525
SspMI CTAG 1 cut(s) 482
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 462
TaiI ACGT 1 cut(s) 591
TaqI TCGA 4 cut(s) 4, 257, 372, 508
TasI AATT 3 cut(s) 46, 66, 286
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 2 cut(s) 58, 88
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 2 cut(s) 18, 89
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 27, 233, 373
TspRI CASTG 2 cut(s) 18, 89
XapI RAATTY 3 cut(s) 46, 66, 286
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.