Rorug02G0602500

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001037
Physical Location & Seq
Forward (+)
72146733 .. 72150667
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0602500.1

Sequence Viewer

Length: 600 bp
ATGGCGGGAATACCAGACGATGTTCCCGTAGATTCTGAAATGAAAGCGCCTTCTGGTTCTTCTTCTGCTGACTCAAATGGGCCACCCCGAATATCTGGAGGAGTAACTGGAAGACGAGTCGCATCAAAATTGACTGGTGAAGATGCTGTAGCGTATCTCAAAGCAGTGAAGGAAGTGTTTTCCGACCGAATAGACATATATGAAAGGTTTCTTGAGGTCATGAGAGATTTCAAAACTCATAGAATTTTCACAGTAGATGTCATTGCCAAAGTAAAGGAACTATTTGAAGGGCATAACAACTTAATTATGGGTTTCAATACTTTCTTGCCAGAGGGTATTGAGATAAGCCTCGATGAAGATGTGCCTCCAAAGAAGCCAGCTGAGTTTCGAGAAGCTATCGACTTTGTAAACAAGATAAAGGAACGTTTCCGAGATGACGACAACCGTGTTTATAAGGCATTCCTAGATATACTGAACAAGTACCGAAACGAGGACAAGCCTATAACTGAGGTTTACCTTGAGGTTGCTGCTTTATTTAGTGACCAGCCAGATTTGCTTGATGAGTTCACTAAATTTCTACCAGATGCAAATCATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

199

Amino Acids

22.53

Weight (kDa)

4.82

Isoelectric Point (pI)

28.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAH PF02671 65 - 109 2.1e-15 Paired amphipathic helix repeat
PAH PF02671 150 - 193 1.6e-15 Paired amphipathic helix repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AciI CCGC 1 cut(s) 5
AclI AACGTT 1 cut(s) 424
AcsI RAATTY 2 cut(s) 243, 572
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 490
AgsI TTSAA 3 cut(s) 232, 287, 316
AluBI AGCT 2 cut(s) 380, 395
AluI AGCT 2 cut(s) 380, 395
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 2 cut(s) 243, 572
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 514
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 50
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 80
BmsI GCATC 3 cut(s) 131, 133, 574
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 233, 539
BsaBI GATNNNNATC 1 cut(s) 588
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 2 cut(s) 112, 139
Bse3DI GCAATG 1 cut(s) 261
Bse8I GATNNNNATC 1 cut(s) 588
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 372, 498
BseNI ACTGG 2 cut(s) 112, 139
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 514
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 490
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 1 cut(s) 82
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 2 cut(s) 373, 499
BspHI TCATGA 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 2 cut(s) 112, 139
Bst4CI ACNGT 2 cut(s) 253, 446
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 381, 507
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 378
CciI TCATGA 1 cut(s) 219
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 481
CviAII CATG 2 cut(s) 220, 593
CviJI RGCY 7 cut(s) 82, 348, 376, 380, 395, 499, 547
CviKI_1 RGCY 7 cut(s) 82, 348, 376, 380, 395, 499, 547
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 2 cut(s) 381, 507
FaeI CATG 2 cut(s) 223, 596
FatI CATG 2 cut(s) 219, 592
Fnu4HI GCNGC 1 cut(s) 528
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 1 cut(s) 82
HhaI GCGC 1 cut(s) 49
Hin1II CATG 2 cut(s) 223, 596
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 3 cut(s) 32, 71, 117
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 3 cut(s) 409, 514, 567
Hpy188I TCNGA 3 cut(s) 37, 184, 431
Hpy188III TCNNGA 4 cut(s) 96, 212, 220, 389
Hpy8I GTNNAC 3 cut(s) 409, 514, 567
HpyAV CCTTC 3 cut(s) 60, 163, 281
HpyCH4III ACNGT 2 cut(s) 253, 446
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 1 cut(s) 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 553
HpyF3I CTNAG 2 cut(s) 381, 507
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 2 cut(s) 223, 596
HspAI GCGC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 3 cut(s) 131, 133, 574
MaeI CTAG 1 cut(s) 464
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 2 cut(s) 103, 539
MboII GAAGA 5 cut(s) 51, 54, 123, 152, 368
MluCI AATT 4 cut(s) 128, 243, 303, 572
MlyI GAGTC 2 cut(s) 65, 126
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 8 cut(s) 92, 208, 325, 359, 375, 484, 502, 514
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 380
Mva1269I GAATGC 1 cut(s) 458
MwoI GCNNNNNNNGC 1 cut(s) 553
NlaIII CATG 2 cut(s) 223, 596
NmuCI GTSAC 1 cut(s) 539
PagI TCATGA 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 2 cut(s) 65, 125
PpsI GAGTC 2 cut(s) 65, 125
PsiI TTATAA 1 cut(s) 453
Psp1406I AACGTT 1 cut(s) 424
PspPI GGNCC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 1 cut(s) 528
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 2 cut(s) 65, 126
SetI ASST 8 cut(s) 209, 219, 382, 397, 427, 513, 519, 525
SfaNI GCATC 3 cut(s) 131, 133, 574
SfcI CTRYAG 1 cut(s) 147
SmlI CTYRAG 2 cut(s) 212, 518
SmoI CTYRAG 2 cut(s) 212, 518
Sse9I AATT 4 cut(s) 128, 243, 303, 572
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 253, 446
TaiI ACGT 1 cut(s) 427
TaqI TCGA 3 cut(s) 351, 388, 399
TaqII GACCGA 1 cut(s) 201
TasI AATT 4 cut(s) 128, 243, 303, 572
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 3 cut(s) 56, 216, 369
TspRI CASTG 1 cut(s) 171
XapI RAATTY 2 cut(s) 243, 572
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.