Rh4BG136100

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001037
Physical Location & Seq
Reverse (-)
24233185 .. 24236046
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG136100.1

Sequence Viewer

Length: 810 bp
ATGAAATTGAGCCCTCATCTTGATTTCCTGAACCCTTGCCCCAACAATTCCATGGAGTTTACAGTTGATGGTGATGTTGATGGTGAGGTTGTGGGCAGTTCTGCTGAGATGGAAGGAAGTAGAGCAGGTGATGAAAATGAAACCGGTGCAAGTTCTGTTGAAGGAGCATTCCAACTGGGTCAGGAAGAAAAGATAATTCTAGATTCATCTGGAAGGAACATAATTCCATCGGCAATTCCTGTAGTATCAGTTGTTTCAGCAGATGAGCCATATGTTGGTCAAGAGTTTGAAACGGAAGCAGCTGCTCATGCATTTTATAATGCATATGCCACTCATGTGGGATTCATAATTCGTGTAAGCAAACTCTCTCGATCAAGGCGGGATGGAACTGCCATTGGCCGTGCACTCGTTTGTAATAAAGAGGGTTATAGAATGCCTGACAAGCGTGAAAAAATTGTAAGGCAAAGAGCAGAGACCAGGGTTGGTTGCAGAGCAATGATTTTGGTGAGAAAAGTAAGTTCTGGTAAATGGGTTGTCACAAAGTTTGTAAAGGAGCACACTCATCCTTTGACACCTGGGAAAGGTCGAAGGGATTGCATTTATGATCAATATCCGAATGAACATGACAAGATTCGGGAACTATCCCAGCAGCTGGCCGTAGAGAAGAAACGTGCTGCAACATATAAAAGACATCTTGACCTAATATTTGAGCATATTGAAGAGCACAATGAGAGCCTATCAAAGAAGATCCAACACATAGTTGATAGTGTGAAGGAGATTGAAAGTAAGGAGCAGCAAGTTTACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

269

Amino Acids

30.25

Weight (kDa)

6.57

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 105 - 191 6.1e-30 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AarI CACCTGC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 116
AccB7I CCANNNNNTGG 2 cut(s) 275, 652
AciI CCGC 1 cut(s) 379
AclWI GGATC 1 cut(s) 742
AcoI YGGCCR 2 cut(s) 397, 654
AfiI CCNNNNNNNGG 3 cut(s) 275, 581, 652
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 4 cut(s) 161, 290, 719, 782
AjnI CCWGG 2 cut(s) 476, 574
AleI CACNNNNGTG 1 cut(s) 335
AluBI AGCT 2 cut(s) 302, 652
AluI AGCT 2 cut(s) 302, 652
Alw21I GWGCWC 3 cut(s) 406, 558, 726
Alw26I GTCTC 1 cut(s) 467
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 1 cut(s) 742
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 2 cut(s) 397, 654
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 5 cut(s) 299, 302, 649, 674, 793
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
AsiGI ACCGGT 1 cut(s) 143
AsuHPI GGTGA 4 cut(s) 83, 95, 140, 517
BaeGI GKGCMC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 3 cut(s) 406, 558, 726
BbvI GCAGC 5 cut(s) 289, 311, 661, 661, 805
BccI CCATC 5 cut(s) 62, 74, 103, 235, 377
BceAI ACGGC 2 cut(s) 384, 641
BcgI CGANNNNNNTGC 2 cut(s) 576, 610
BciT130I CCWGG 2 cut(s) 478, 576
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 467
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 5 cut(s) 300, 303, 650, 675, 794
BlsI GCNGC 5 cut(s) 301, 304, 651, 676, 795
Bme1390I CCNGG 2 cut(s) 478, 576
BmrFI CCNGG 2 cut(s) 478, 576
BmrI ACTGGG 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 3 cut(s) 51, 477, 575
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 581, 652
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 2 cut(s) 478, 576
BseDI CCNNGG 3 cut(s) 51, 477, 575
BseGI GGATG 2 cut(s) 388, 562
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 3 cut(s) 275, 581, 652
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 5 cut(s) 289, 311, 661, 661, 805
BseYI CCCAGC 1 cut(s) 645
BshFI GGCC 2 cut(s) 399, 656
BshTI ACCGGT 1 cut(s) 143
BsiHKAI GWGCWC 3 cut(s) 406, 558, 726
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 275, 581, 652
BsmAI GTCTC 1 cut(s) 467
BsmI GAATGC 2 cut(s) 167, 438
BsnI GGCC 2 cut(s) 399, 656
Bso31I GGTCTC 1 cut(s) 467
Bsp1286I GDGCHC 4 cut(s) 14, 406, 558, 726
Bsp143I GATC 3 cut(s) 371, 604, 747
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 1 cut(s) 379
BspANI GGCC 2 cut(s) 399, 656
BspCNI CTCAG 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 742
BspQI GCTCTTC 1 cut(s) 714
BspTNI GGTCTC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 3 cut(s) 51, 477, 575
BssMI GATC 3 cut(s) 371, 604, 747
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 478, 576
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 714
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 51
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 2 cut(s) 388, 562
BstKTI GATC 3 cut(s) 374, 607, 750
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 3 cut(s) 371, 604, 747
BstMWI GCNNNNNNNGC 2 cut(s) 308, 442
BstNI CCWGG 2 cut(s) 478, 576
BstSCI CCNGG 2 cut(s) 476, 574
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 5 cut(s) 289, 311, 661, 661, 805
BstX2I RGATCY 1 cut(s) 747
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 1 cut(s) 747
BsuRI GGCC 2 cut(s) 399, 656
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 388, 562
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 654
CaiI CAGNNNCTG 1 cut(s) 652
Cfr10I RCCGGY 1 cut(s) 143
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 4 cut(s) 52, 308, 335, 623
CviJI RGCY 7 cut(s) 12, 268, 302, 399, 652, 656, 735
CviKI_1 RGCY 7 cut(s) 12, 268, 302, 399, 652, 656, 735
DdeI CTNAG 1 cut(s) 105
DpnI GATC 3 cut(s) 373, 606, 749
DpnII GATC 3 cut(s) 371, 604, 747
EaeI YGGCCR 2 cut(s) 397, 654
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Eco130I CCWWGG 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoRII CCWGG 2 cut(s) 476, 574
EcoT14I CCWWGG 1 cut(s) 51
EcoT22I ATGCAT 2 cut(s) 313, 325
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 4 cut(s) 55, 311, 338, 626
FatI CATG 4 cut(s) 51, 307, 334, 622
FauI CCCGC 1 cut(s) 372
FauNDI CATATG 2 cut(s) 271, 325
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 5 cut(s) 300, 303, 650, 675, 794
FokI GGATG 2 cut(s) 395, 549
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 5 cut(s) 300, 303, 650, 675, 794
FspBI CTAG 1 cut(s) 200
GluI GCNGC 5 cut(s) 300, 303, 650, 675, 794
GsaI CCCAGC 1 cut(s) 649
HaeIII GGCC 2 cut(s) 399, 656
HapII CCGG 1 cut(s) 144
Hin1II CATG 4 cut(s) 55, 311, 338, 626
HinfI GANTC 3 cut(s) 203, 342, 631
HpaII CCGG 1 cut(s) 144
HphI GGTGA 4 cut(s) 83, 95, 140, 517
Hpy166II GTNNAC 3 cut(s) 60, 404, 802
Hpy188I TCNGA 1 cut(s) 615
Hpy188III TCNNGA 9 cut(s) 20, 28, 182, 200, 210, 281, 369, 635, 695
Hpy8I GTNNAC 3 cut(s) 60, 404, 802
HpyAV CCTTC 5 cut(s) 107, 155, 207, 582, 766
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 670
HpyCH4V TGCA 7 cut(s) 149, 311, 323, 404, 489, 597, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 442
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 670
Hsp92II CATG 4 cut(s) 55, 311, 338, 626
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 3 cut(s) 371, 604, 747
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 3 cut(s) 164, 553, 790
Lsp1109I GCAGC 5 cut(s) 289, 311, 661, 661, 805
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 670
MaeIII GTNAC 1 cut(s) 535
MalI GATC 3 cut(s) 373, 606, 749
MboI GATC 3 cut(s) 371, 604, 747
MboII GAAGA 4 cut(s) 197, 676, 731, 757
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 4 cut(s) 14, 406, 558, 726
MluCI AATT 7 cut(s) 5, 46, 195, 222, 234, 348, 453
MmeI TCCRAC 2 cut(s) 196, 775
MnlI CCTC 3 cut(s) 24, 79, 415
Mph1103I ATGCAT 2 cut(s) 313, 325
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 302, 652
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 478, 576
Mva1269I GAATGC 2 cut(s) 167, 438
MvaI CCWGG 2 cut(s) 478, 576
MwoI GCNNNNNNNGC 2 cut(s) 308, 442
NcoI CCATGG 1 cut(s) 51
NdeI CATATG 2 cut(s) 271, 325
NdeII GATC 3 cut(s) 371, 604, 747
NlaIII CATG 4 cut(s) 55, 311, 338, 626
NmuCI GTSAC 1 cut(s) 535
NsiI ATGCAT 2 cut(s) 313, 325
OliI CACNNNNGTG 1 cut(s) 335
PaqCI CACCTGC 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 714
PctI GAATGC 2 cut(s) 167, 438
PfeI GAWTC 3 cut(s) 203, 342, 631
PflMI CCANNNNNTGG 2 cut(s) 275, 652
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 5 cut(s) 301, 304, 651, 676, 795
PsiI TTATAA 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 476, 574
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 2 cut(s) 476, 574
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 747
PvuII CAGCTG 2 cut(s) 302, 652
RseI CAYNNNNRTG 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 714
SatI GCNGC 5 cut(s) 300, 303, 650, 675, 794
Sau3AI GATC 3 cut(s) 371, 604, 747
ScrFI CCNGG 2 cut(s) 478, 576
SduI GDGCHC 4 cut(s) 14, 406, 558, 726
SetI ASST 8 cut(s) 90, 130, 304, 577, 586, 654, 673, 702
SfcI CTRYAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 7 cut(s) 5, 46, 195, 222, 234, 348, 453
SsiI CCGC 1 cut(s) 379
SspI AATATT 1 cut(s) 705
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 476, 574
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 673
TaqI TCGA 2 cut(s) 370, 586
TasI AATT 7 cut(s) 5, 46, 195, 222, 234, 348, 453
TfiI GAWTC 3 cut(s) 203, 342, 631
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 5 cut(s) 299, 302, 649, 674, 793
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 6 cut(s) 17, 147, 153, 195, 334, 633
TspGWI ACGGA 1 cut(s) 308
Van91I CCANNNNNTGG 2 cut(s) 275, 652
VneI GTGCAC 1 cut(s) 402
XagI CCTNNNNNAGG 1 cut(s) 579
XbaI TCTAGA 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 1 cut(s) 200
Zsp2I ATGCAT 2 cut(s) 313, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.