Rh3AG002700

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001037
Physical Location & Seq
Reverse (-)
239630 .. 241999
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG002700.1

Sequence Viewer

Length: 981 bp
ATGAAAAATCTTTTGCAATCCTTTCGTGCTTCAATTACTGGGCCTGGGCCTGGGCCAATCATATTCGTTATAACCAAGTTGAGTGACTCGGACTGTTTGACTCAAAATCCTACGGAGCCTCTCTTTCATAGGCCTCTCGCCTTCTCTCTCTCAAGTTCGATAGGCACTGATCAGGGAAAACCAGTCATTTTCATTGCAAAATTTACTAATGATTCCCTGAATTTGCATATTTTTGCAGTGGATTCGGTACTTGATATAAATGTTAATGAGGAGGTGTCAAATGGTTCAACTGATACCGAGTTCAAGCATTCTAATTCTAATGATGGTGCCTTGGTAGGCACTTCTCTTCAGAAGATACTTTGGGTTGTACAAAATGATGAAATAACTCAAAACTCTTCTAAAGATGGATCTGTAGTCGAGGTAGATGAGCCATATGTGGGTCAGGAATTTGATACAGAAGTAAATGCACAGGCATTTTATAATGTCTATGGCTTGCGTATGGGTTTCAATACTCGTATGAACTATCTGTCTCGATCCAAACATGATGGAACTATCATTGCACGAACATTTGTATGCAGCAAAGAGGGTTACCGGAAGCCTGATAGGCGTGACAAGAAGACTGTAAACCCACGCGCTCCCACTAGGGTAGGTTGTATGGCAATGCTGTCGATAAAAAAACTGAATATCGGCAAGTGGGTTGTTACTAAGTTTATCAAGGAGCACAATCATGCATTGATAGCGAGCAAACGTCCAAAAGGGTTGATTGAGGATCAAATACCGGATGATAAGACAAAGATTGAAGAATTAACTGGAGAGCTGTTCCTTGAGAGAGAGCGTTCTGCTTCACTAAGAAAAGTCATAGACCTTCTATTTGAGCACATCGAGGAACATACACAAGACCTGTCGAAGAAAGTCCAGTATGTTGTGGATAAGGTAAAGGAGATTGAATCAGAAGGGACAGACCGCCATAAGCTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

326

Amino Acids

36.74

Weight (kDa)

6.77

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 159 - 246 1.3e-29 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 71, 480
AccB1I GGYRCC 1 cut(s) 326
AccII CGCG 1 cut(s) 633
AciI CCGC 1 cut(s) 964
AclWI GGATC 3 cut(s) 415, 528, 777
AcsI RAATTY 3 cut(s) 200, 220, 446
AcuI CTGAAG 1 cut(s) 332
AfaI GTAC 2 cut(s) 249, 369
AfiI CCNNNNNNNGG 2 cut(s) 50, 437
AgsI TTSAA 6 cut(s) 33, 288, 304, 508, 800, 947
AjnI CCWGG 2 cut(s) 43, 49
AluBI AGCT 2 cut(s) 817, 973
AluI AGCT 2 cut(s) 817, 973
Alw21I GWGCWC 2 cut(s) 723, 879
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 3 cut(s) 415, 528, 777
AoxI GGCC 4 cut(s) 41, 47, 53, 131
ApeKI GCWGC 1 cut(s) 576
ApoI RAATTY 3 cut(s) 200, 220, 446
ArsI GACNNNNNNTTYG 2 cut(s) 854, 886
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 3 cut(s) 41, 47, 53
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BanI GGYRCC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 2 cut(s) 723, 879
BbvI GCAGC 1 cut(s) 588
BccI CCATC 3 cut(s) 317, 398, 539
BcgI CGANNNNNNTGC 6 cut(s) 5, 39, 225, 259, 648, 682
BciT130I CCWGG 2 cut(s) 45, 51
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 411
BglI GCCNNNNNGGC 1 cut(s) 604
BisI GCNGC 1 cut(s) 577
BlsI GCNGC 1 cut(s) 578
Bme1390I CCNGG 2 cut(s) 45, 51
BmgT120I GGNCC 3 cut(s) 41, 47, 53
BmiI GGNNCC 2 cut(s) 117, 328
BmrFI CCNGG 2 cut(s) 45, 51
BmrI ACTGGG 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 1 cut(s) 831
BpuEI CTTGAG 2 cut(s) 136, 845
BsaJI CCNNGG 3 cut(s) 44, 50, 330
BsaWI WCCGGW 2 cut(s) 591, 778
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 437
Bse1I ACTGG 4 cut(s) 43, 182, 814, 916
Bse3DI GCAATG 3 cut(s) 192, 555, 666
BseBI CCWGG 2 cut(s) 45, 51
BseDI CCNNGG 3 cut(s) 44, 50, 330
BseGI GGATG 1 cut(s) 787
BseLI CCNNNNNNNGG 2 cut(s) 50, 437
BseMI GCAATG 3 cut(s) 192, 555, 666
BseNI ACTGG 4 cut(s) 43, 182, 814, 916
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 4 cut(s) 43, 49, 55, 133
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 2 cut(s) 723, 879
BsiSI CCGG 2 cut(s) 592, 779
BslFI GGGAC 1 cut(s) 970
BslI CCNNNNNNNGG 2 cut(s) 50, 437
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 970
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 4 cut(s) 43, 49, 55, 133
Bsp1286I GDGCHC 2 cut(s) 723, 879
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 4 cut(s) 169, 407, 533, 769
BspACI CCGC 1 cut(s) 964
BspANI GGCC 4 cut(s) 43, 49, 55, 133
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 2 cut(s) 117, 328
BspPI GGATC 3 cut(s) 415, 528, 777
BspT107I GGYRCC 1 cut(s) 326
BsrDI GCAATG 3 cut(s) 192, 555, 666
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 4 cut(s) 43, 182, 814, 916
BssECI CCNNGG 3 cut(s) 44, 50, 330
BssMI GATC 4 cut(s) 169, 407, 533, 769
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 45, 51
Bst4CI ACNGT 2 cut(s) 95, 622
Bst6I CTCTTC 2 cut(s) 351, 400
BstAUI TGTACA 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 494, 742
BstDEI CTNAG 3 cut(s) 705, 848, 974
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 1 cut(s) 787
BstFNI CGCG 1 cut(s) 633
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 4 cut(s) 172, 410, 536, 772
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 4 cut(s) 169, 407, 533, 769
BstMWI GCNNNNNNNGC 2 cut(s) 604, 737
BstNI CCWGG 2 cut(s) 45, 51
BstPI GGTNACC 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 43, 49
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 1 cut(s) 588
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BsuRI GGCC 4 cut(s) 43, 49, 55, 133
BtsCI GGATG 1 cut(s) 787
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 165, 243
Cac8I GCNNGC 2 cut(s) 494, 742
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 41, 47, 53
Csp6I GTAC 2 cut(s) 248, 368
CviAII CATG 2 cut(s) 542, 728
CviQI GTAC 2 cut(s) 248, 368
DdeI CTNAG 3 cut(s) 705, 848, 974
DpnI GATC 4 cut(s) 171, 409, 535, 771
DpnII GATC 4 cut(s) 169, 407, 533, 769
Eam1104I CTCTTC 2 cut(s) 351, 400
EarI CTCTTC 2 cut(s) 351, 400
Eco130I CCWWGG 1 cut(s) 330
Eco147I AGGCCT 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 332
Eco91I GGTNACC 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 43, 49
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 545, 731
FaqI GGGAC 1 cut(s) 970
FatI CATG 2 cut(s) 541, 727
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 577
FokI GGATG 1 cut(s) 794
Fsp4HI GCNGC 1 cut(s) 577
FspBI CTAG 1 cut(s) 642
GlaI GCGC 1 cut(s) 634
GluI GCNGC 1 cut(s) 577
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 4 cut(s) 43, 49, 55, 133
HapII CCGG 2 cut(s) 592, 779
HhaI GCGC 1 cut(s) 635
Hin1II CATG 2 cut(s) 545, 731
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HinfI GANTC 5 cut(s) 86, 100, 212, 242, 947
HpaII CCGG 2 cut(s) 592, 779
Hpy166II GTNNAC 1 cut(s) 625
Hpy188I TCNGA 4 cut(s) 91, 351, 952, 977
Hpy188III TCNNGA 2 cut(s) 443, 531
Hpy8I GTNNAC 1 cut(s) 625
HpyAV CCTTC 3 cut(s) 151, 875, 947
HpyCH4III ACNGT 2 cut(s) 95, 622
HpyCH4IV ACGT 1 cut(s) 748
HpyCH4V TGCA 8 cut(s) 16, 197, 226, 236, 467, 560, 576, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 604, 737
HpyF3I CTNAG 3 cut(s) 705, 848, 974
HpySE526I ACGT 1 cut(s) 748
Hsp92II CATG 2 cut(s) 545, 731
HspAI GCGC 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 169, 407, 533, 769
LmnI GCTCC 3 cut(s) 115, 640, 718
Lsp1109I GCAGC 1 cut(s) 588
MaeI CTAG 1 cut(s) 642
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 4 cut(s) 83, 587, 608, 700
MalI GATC 4 cut(s) 171, 409, 535, 771
MboI GATC 4 cut(s) 169, 407, 533, 769
MboII GAAGA 6 cut(s) 338, 364, 387, 628, 812, 919
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 2 cut(s) 723, 879
MluCI AATT 6 cut(s) 33, 200, 220, 313, 446, 803
MlyI GAGTC 2 cut(s) 80, 94
MnlI CCTC 8 cut(s) 129, 144, 262, 265, 412, 577, 760, 877
Mph1103I ATGCAT 1 cut(s) 733
MseI TTAA 2 cut(s) 264, 806
MslI CAYNNNNRTG 2 cut(s) 571, 726
MspI CCGG 2 cut(s) 592, 779
MspR9I CCNGG 2 cut(s) 45, 51
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 2 cut(s) 45, 51
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 2 cut(s) 604, 737
NdeI CATATG 1 cut(s) 433
NdeII GATC 4 cut(s) 169, 407, 533, 769
NlaIII CATG 2 cut(s) 545, 731
NlaIV GGNNCC 2 cut(s) 117, 328
NmuCI GTSAC 2 cut(s) 83, 608
NsiI ATGCAT 1 cut(s) 733
PceI AGGCCT 1 cut(s) 133
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 3 cut(s) 212, 242, 947
PkrI GCNGC 1 cut(s) 578
PleI GAGTC 2 cut(s) 80, 94
PpsI GAGTC 2 cut(s) 80, 94
PsiI TTATAA 2 cut(s) 71, 480
Psp6I CCWGG 2 cut(s) 43, 49
PspEI GGTNACC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 43, 49
PspN4I GGNNCC 2 cut(s) 117, 328
PspPI GGNCC 3 cut(s) 41, 47, 53
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 2 cut(s) 249, 369
RsaNI GTAC 2 cut(s) 248, 368
RseI CAYNNNNRTG 2 cut(s) 571, 726
SaqAI TTAA 2 cut(s) 264, 806
SatI GCNGC 1 cut(s) 577
Sau3AI GATC 4 cut(s) 169, 407, 533, 769
Sau96I GGNCC 3 cut(s) 41, 47, 53
SchI GAGTC 2 cut(s) 80, 94
ScrFI CCNGG 2 cut(s) 45, 51
SduI GDGCHC 2 cut(s) 723, 879
SetI ASST 9 cut(s) 276, 423, 652, 751, 819, 867, 903, 936, 975
SfcI CTRYAG 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 571, 726
SmlI CTYRAG 2 cut(s) 151, 824
SmoI CTYRAG 2 cut(s) 151, 824
Sse9I AATT 6 cut(s) 33, 200, 220, 313, 446, 803
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 1 cut(s) 964
SspMI CTAG 1 cut(s) 642
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 2 cut(s) 43, 49
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 95, 622
TaiI ACGT 1 cut(s) 751
TaqI TCGA 6 cut(s) 158, 417, 532, 668, 882, 905
TasI AATT 6 cut(s) 33, 200, 220, 313, 446, 803
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 3 cut(s) 212, 242, 947
Tru1I TTAA 2 cut(s) 264, 806
Tru9I TTAA 2 cut(s) 264, 806
TscAI CASTG 2 cut(s) 172, 243
TseFI GTSAC 2 cut(s) 83, 608
TseI GCWGC 1 cut(s) 576
Tsp45I GTSAC 2 cut(s) 83, 608
TspDTI ATGAA 5 cut(s) 17, 116, 181, 393, 533
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 2 cut(s) 172, 243
XapI RAATTY 3 cut(s) 200, 220, 446
XspI CTAG 1 cut(s) 642
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.