Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Forward (+)

30588330 .. 30590201

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G364300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATTCTGAACTTGATATAAATATTAATGATGGGGTGTTAAATGATTCAAGTGATGCCGAGCTTAAGCATTCCAATGATGGTGCATTGGTAGGAAGCTTTGTTGAAGTTGAAGAGATGTCTCATCTTGGACAAGGACAAGATGATGAAGTGACTCAAAATCCTTGTAAAGATGGATCAAGTGTAGTGGTCGAAGCACATGAGCCGTATGTGGGTCAGGAATTTGATACAGAAGAAACTGCACAAGCATTTTATAATGCCTATGGCATGCGTGTGGGTTTCATGACTCGTATGAACTACCTGGCTCGATCCAAACATGGTGGAACCATCATTGGCCGGACTTTTGTGTGCAACAAGGAGGGTTACCGGAAGCCTGATAGGCGTGATAAGACTACCATAAAGCCTCGGGCTCCCACTAGGGTAGGTTGTAAGGCCATGCTATCGATAAAGAAAATTAGTATTGGGAAATGGGTTGTCACAAGGTTCATGAAGGAGCACACTCATGCATTGACTGCCACTGCCAACAAAGGTCAAAAAGGATTGATTGCTGATCAAGTACCGGATGATAAGACAAAGATTGAAGAATTAACTCGCGAGCTGTTCCTTGAGAGAAAGCAGTCTGCTTCACTTAGAGAAATAGTTGATCTTCTATTTGATCACATTGAGGAACATACACAAGACCTGTCAAAGAAAGTTCAGTATGTTGTCGACAAGGTAAAGGAGATTGAATCGGAAGGGAAAAGTCCTAGCATCCTAAACCTAATGTATACTGTATATATTCACATTAGCTTTATAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

267

Amino Acids

30.0

Weight (kDa)

5.76

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	255, 794
AccI	GTMKAC	2 cut(s)	708, 767
AccII	CGCG	1 cut(s)	594
AclWI	GGATC	2 cut(s)	184, 303
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	5 cut(s)	51, 107, 113, 581, 728
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	4 cut(s)	64, 99, 598, 789
AluI	AGCT	4 cut(s)	64, 99, 598, 789
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	184, 303
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	2 cut(s)	334, 432
ApoI	RAATTY	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	498
BccI	CCATC	4 cut(s)	26, 74, 167, 335
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	2 cut(s)	550, 655
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	417, 747
BfrI	CTTAAG	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	405
BmiI	GGNNCC	2 cut(s)	325, 411
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	2 cut(s)	46, 759
BpuEI	CTTGAG	1 cut(s)	626
Bsa29I	ATCGAT	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	404
BsaWI	WCCGGW	2 cut(s)	366, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	2 cut(s)	568, 750
BseLI	CCNNNNNNNGG	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	2 cut(s)	336, 434
BshVI	ATCGAT	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	498
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	3 cut(s)	337, 367, 560
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	336, 434
BsoBI	CYCGRG	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	412, 498
Bsp143I	GATC	5 cut(s)	176, 308, 550, 643, 655
Bsp68I	TCGCGA	1 cut(s)	594
BspANI	GGCC	2 cut(s)	336, 434
BspDI	ATCGAT	1 cut(s)	443
BspFNI	CGCG	1 cut(s)	594
BspHI	TCATGA	2 cut(s)	282, 486
BspLI	GGNNCC	2 cut(s)	325, 411
BspPI	GGATC	2 cut(s)	184, 303
BspTI	CTTAAG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	5 cut(s)	176, 308, 550, 643, 655
BssNAI	GTATAC	1 cut(s)	768
Bst1107I	GTATAC	1 cut(s)	768
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	1 cut(s)	108
BstAFI	CTTAAG	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	269, 596
BstDEI	CTNAG	1 cut(s)	629
BstEII	GGTNACC	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	568, 750
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	5 cut(s)	179, 311, 553, 646, 658
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	5 cut(s)	176, 308, 550, 643, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 512
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	271
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	300
BstUI	CGCG	1 cut(s)	594
BstZ17I	GTATAC	1 cut(s)	768
Bsu15I	ATCGAT	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	336, 434
BsuTUI	ATCGAT	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	568, 750
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	516
BtuMI	TCGCGA	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	269, 596
CciI	TCATGA	2 cut(s)	282, 486
ClaI	ATCGAT	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	557
CspCI	CAANNNNNGTGG	4 cut(s)	168, 203, 301, 336
CviAII	CATG	7 cut(s)	200, 268, 283, 317, 436, 487, 503
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	1 cut(s)	629
DpnI	GATC	5 cut(s)	178, 310, 552, 645, 657
DpnII	GATC	5 cut(s)	176, 308, 550, 643, 655
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	405
Eco91I	GGTNACC	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	412
FaeI	CATG	7 cut(s)	203, 271, 286, 320, 439, 490, 506
FatI	CATG	7 cut(s)	199, 267, 282, 316, 435, 486, 502
FbaI	TGATCA	2 cut(s)	550, 655
FblI	GTMKAC	2 cut(s)	708, 767
FokI	GGATG	2 cut(s)	575, 737
FriOI	GRGCYC	1 cut(s)	412
FspBI	CTAG	2 cut(s)	417, 747
HaeIII	GGCC	2 cut(s)	336, 434
HapII	CCGG	3 cut(s)	337, 367, 560
Hin1II	CATG	7 cut(s)	203, 271, 286, 320, 439, 490, 506
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	5 cut(s)	5, 47, 154, 286, 728
HpaII	CCGG	3 cut(s)	337, 367, 560
Hpy166II	GTNNAC	2 cut(s)	709, 768
Hpy188I	TCNGA	2 cut(s)	10, 733
Hpy188III	TCNNGA	4 cut(s)	218, 283, 487, 593
Hpy8I	GTNNAC	2 cut(s)	709, 768
HpyAV	CCTTC	2 cut(s)	484, 728
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4V	TGCA	4 cut(s)	86, 242, 351, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 512
HpyF3I	CTNAG	1 cut(s)	629
Hsp92II	CATG	7 cut(s)	203, 271, 286, 320, 439, 490, 506
Ksp22I	TGATCA	2 cut(s)	550, 655
Kzo9I	GATC	5 cut(s)	176, 308, 550, 643, 655
LmnI	GCTCC	2 cut(s)	415, 493
LpnPI	CCDG	8 cut(s)	203, 287, 314, 350, 380, 387, 573, 695
LweI	GCATC	2 cut(s)	46, 759
MaeI	CTAG	2 cut(s)	417, 747
MaeIII	GTNAC	3 cut(s)	151, 362, 475
MalI	GATC	5 cut(s)	178, 310, 552, 645, 657
MboI	GATC	5 cut(s)	176, 308, 550, 643, 655
MboII	GAAGA	4 cut(s)	125, 245, 593, 638
MhlI	GDGCHC	2 cut(s)	412, 498
MluCI	AATT	4 cut(s)	221, 453, 584, 795
MlyI	GAGTC	2 cut(s)	148, 280
MnlI	CCTC	3 cut(s)	352, 414, 658
Mph1103I	ATGCAT	1 cut(s)	508
MseI	TTAA	5 cut(s)	27, 41, 66, 587, 799
MslI	CAYNNNNRTG	3 cut(s)	75, 272, 501
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	3 cut(s)	337, 367, 560
MspR9I	CCNGG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	379, 512
NdeII	GATC	5 cut(s)	176, 308, 550, 643, 655
NlaIII	CATG	7 cut(s)	203, 271, 286, 320, 439, 490, 506
NlaIV	GGNNCC	2 cut(s)	325, 411
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	151, 475
NruI	TCGCGA	1 cut(s)	594
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	271
PagI	TCATGA	2 cut(s)	282, 486
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	5, 47, 728
PleI	GAGTC	2 cut(s)	148, 280
PpsI	GAGTC	2 cut(s)	148, 280
PshBI	ATTAAT	1 cut(s)	27
PsiI	TTATAA	2 cut(s)	255, 794
Psp6I	CCWGG	1 cut(s)	300
PspEI	GGTNACC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	325, 411
RruI	TCGCGA	1 cut(s)	594
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	3 cut(s)	75, 272, 501
SalI	GTCGAC	1 cut(s)	707
SaqAI	TTAA	5 cut(s)	27, 41, 66, 587, 799
Sau3AI	GATC	5 cut(s)	176, 308, 550, 643, 655
SchI	GAGTC	2 cut(s)	148, 280
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	2 cut(s)	412, 498
SfaNI	GCATC	2 cut(s)	46, 759
SmiMI	CAYNNNNRTG	3 cut(s)	75, 272, 501
SmlI	CTYRAG	2 cut(s)	65, 605
SmoI	CTYRAG	2 cut(s)	65, 605
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	4 cut(s)	221, 453, 584, 795
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	2 cut(s)	417, 747
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	772
TaqI	TCGA	4 cut(s)	192, 307, 443, 708
TasI	AATT	4 cut(s)	221, 453, 584, 795
TfiI	GAWTC	3 cut(s)	5, 47, 728
Tru1I	TTAA	5 cut(s)	27, 41, 66, 587, 799
Tru9I	TTAA	5 cut(s)	27, 41, 66, 587, 799
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	2 cut(s)	151, 475
Tsp45I	GTSAC	2 cut(s)	151, 475
TspDTI	ATGAA	5 cut(s)	162, 271, 308, 475, 503
TspRI	CASTG	1 cut(s)	523
Vha464I	CTTAAG	1 cut(s)	65
VspI	ATTAAT	1 cut(s)	27
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	708, 767
XspI	CTAG	2 cut(s)	417, 747
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.