RchiOBHm_Chr4g0406521

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001037
Physical Location & Seq
Reverse (-)
28360829 .. 28364120
3292 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37786

Sequence Viewer

Length: 702 bp
ATGGAAGGAAGTAGAGCTGGTGATGAAAATGAAACCGGTGCAAGTTCTGTTGAAGGAGCATTCCAACTGGGTCAGGAAGAAAAGATAATTCTAGATTCATCTGGAAGGAACATAATTCCATCGGCAATTCCTGTAGTATCAGTTGTTTCAGCAGATGAGCCATATGTTGGTCAAGAGTTTGAAACGGAAGCAGCTGCTCATGCATTTTATAACGCATATGCCACTCATGTGGGATTCATAATTCGTGTAAGCAAACTCTCTCGATCAAGGCGGGATGGAACTGCCATTGGCCGTGCACTTGTTTGTAATAAAGAGGGTTATAGAATGCCTGACAAGCGTGAAAAAATTGTAAGGCAAAGAGCAGAGACCAGGGTTGGTTGCAGAGCAATGATTTTGGTGAGAAAAGTAAGTTCTGGTAAATGGGTTGTCACAAAGTTTGAAAAGGAGCACACTCATCCTTTGACACCTGGGAAAGGTCGAAGGGATTGCATTTATGATCAATATCCGAATGAACATGACAAGATTCGGGAACTATCCCAGCAGCTGGCCGTAGAGAAGAAACGTGCTGCAACATATAAAAGACATCTTGACCTAATATTTGAGCATATTGAAGAGCACAATGAGAGCCTATCAAAGAAGATCCAACACATAGTTGATAGTGTGAAGGAGATTGAAAGTAAGGAGCAGCAAGTTTACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

233

Amino Acids

26.45

Weight (kDa)

8.65

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 69 - 155 4.9e-30 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AccB7I CCANNNNNTGG 2 cut(s) 167, 544
AciI CCGC 1 cut(s) 271
AclWI GGATC 1 cut(s) 634
AcoI YGGCCR 2 cut(s) 289, 546
AfiI CCNNNNNNNGG 3 cut(s) 167, 473, 544
AgeI ACCGGT 1 cut(s) 35
AgsI TTSAA 5 cut(s) 53, 182, 440, 611, 674
AjnI CCWGG 2 cut(s) 368, 466
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 3 cut(s) 17, 194, 544
AluI AGCT 3 cut(s) 17, 194, 544
Alw21I GWGCWC 3 cut(s) 298, 450, 618
Alw26I GTCTC 1 cut(s) 359
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 1 cut(s) 634
AlwNI CAGNNNCTG 1 cut(s) 544
AoxI GGCC 2 cut(s) 289, 546
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 5 cut(s) 191, 194, 541, 566, 685
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
AsiGI ACCGGT 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 32, 409
BaeGI GKGCMC 1 cut(s) 298
Bbv12I GWGCWC 3 cut(s) 298, 450, 618
BbvI GCAGC 5 cut(s) 181, 203, 553, 553, 697
BccI CCATC 2 cut(s) 127, 269
BceAI ACGGC 2 cut(s) 276, 533
BcgI CGANNNNNNTGC 2 cut(s) 468, 502
BciT130I CCWGG 2 cut(s) 370, 468
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 5 cut(s) 192, 195, 542, 567, 686
BlsI GCNGC 5 cut(s) 193, 196, 543, 568, 687
Bme1390I CCNGG 2 cut(s) 370, 468
BmrFI CCNGG 2 cut(s) 370, 468
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 369, 467
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 473, 544
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 2 cut(s) 370, 468
BseDI CCNNGG 2 cut(s) 369, 467
BseGI GGATG 2 cut(s) 280, 454
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 3 cut(s) 167, 473, 544
BseMI GCAATG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 5 cut(s) 181, 203, 553, 553, 697
BseYI CCCAGC 1 cut(s) 537
BshFI GGCC 2 cut(s) 291, 548
BshTI ACCGGT 1 cut(s) 35
BsiHKAI GWGCWC 3 cut(s) 298, 450, 618
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 3 cut(s) 167, 473, 544
BsmAI GTCTC 1 cut(s) 359
BsmI GAATGC 2 cut(s) 59, 330
BsnI GGCC 2 cut(s) 291, 548
Bso31I GGTCTC 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 298, 450, 618
Bsp143I GATC 3 cut(s) 263, 496, 639
BspACI CCGC 1 cut(s) 271
BspANI GGCC 2 cut(s) 291, 548
BspPI GGATC 1 cut(s) 634
BspQI GCTCTTC 1 cut(s) 606
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 369, 467
BssMI GATC 3 cut(s) 263, 496, 639
Bst2UI CCWGG 2 cut(s) 370, 468
Bst6I CTCTTC 1 cut(s) 606
BstC8I GCNNGC 1 cut(s) 546
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 280, 454
BstKTI GATC 3 cut(s) 266, 499, 642
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 263, 496, 639
BstMWI GCNNNNNNNGC 2 cut(s) 200, 334
BstNI CCWGG 2 cut(s) 370, 468
BstSCI CCNGG 2 cut(s) 368, 466
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 5 cut(s) 181, 203, 553, 553, 697
BstX2I RGATCY 1 cut(s) 639
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 1 cut(s) 639
BsuRI GGCC 2 cut(s) 291, 548
BtsCI GGATG 2 cut(s) 280, 454
Cac8I GCNNGC 1 cut(s) 546
CaiI CAGNNNCTG 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 35
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 3 cut(s) 200, 227, 515
CviJI RGCY 7 cut(s) 17, 160, 194, 291, 544, 548, 627
CviKI_1 RGCY 7 cut(s) 17, 160, 194, 291, 544, 548, 627
DpnI GATC 3 cut(s) 265, 498, 641
DpnII GATC 3 cut(s) 263, 496, 639
EaeI YGGCCR 2 cut(s) 289, 546
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoRII CCWGG 2 cut(s) 368, 466
EcoT22I ATGCAT 1 cut(s) 205
FaeI CATG 3 cut(s) 203, 230, 518
FatI CATG 3 cut(s) 199, 226, 514
FauI CCCGC 1 cut(s) 264
FauNDI CATATG 2 cut(s) 163, 217
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 5 cut(s) 192, 195, 542, 567, 686
FokI GGATG 2 cut(s) 287, 441
Fsp4HI GCNGC 5 cut(s) 192, 195, 542, 567, 686
FspBI CTAG 1 cut(s) 92
GluI GCNGC 5 cut(s) 192, 195, 542, 567, 686
GsaI CCCAGC 1 cut(s) 541
HaeIII GGCC 2 cut(s) 291, 548
HapII CCGG 1 cut(s) 36
Hin1II CATG 3 cut(s) 203, 230, 518
HinfI GANTC 3 cut(s) 95, 234, 523
HpaII CCGG 1 cut(s) 36
HphI GGTGA 2 cut(s) 32, 409
Hpy166II GTNNAC 2 cut(s) 296, 694
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 7 cut(s) 74, 92, 102, 173, 261, 527, 587
Hpy8I GTNNAC 2 cut(s) 296, 694
HpyAV CCTTC 4 cut(s) 47, 99, 474, 658
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 6 cut(s) 41, 203, 296, 381, 489, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 334
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 3 cut(s) 203, 230, 518
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 3 cut(s) 263, 496, 639
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 3 cut(s) 56, 445, 682
Lsp1109I GCAGC 5 cut(s) 181, 203, 553, 553, 697
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 1 cut(s) 427
MalI GATC 3 cut(s) 265, 498, 641
MboI GATC 3 cut(s) 263, 496, 639
MboII GAAGA 4 cut(s) 89, 568, 623, 649
MflI RGATCY 1 cut(s) 639
MhlI GDGCHC 3 cut(s) 298, 450, 618
MluCI AATT 5 cut(s) 87, 114, 126, 240, 345
MmeI TCCRAC 2 cut(s) 88, 667
MnlI CCTC 1 cut(s) 307
Mph1103I ATGCAT 1 cut(s) 205
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 2 cut(s) 194, 544
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 2 cut(s) 370, 468
Mva1269I GAATGC 2 cut(s) 59, 330
MvaI CCWGG 2 cut(s) 370, 468
MwoI GCNNNNNNNGC 2 cut(s) 200, 334
NdeI CATATG 2 cut(s) 163, 217
NdeII GATC 3 cut(s) 263, 496, 639
NlaIII CATG 3 cut(s) 203, 230, 518
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 227
PciSI GCTCTTC 1 cut(s) 606
PctI GAATGC 2 cut(s) 59, 330
PfeI GAWTC 3 cut(s) 95, 234, 523
PflMI CCANNNNNTGG 2 cut(s) 167, 544
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 5 cut(s) 193, 196, 543, 568, 687
PsiI TTATAA 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 368, 466
PspFI CCCAGC 1 cut(s) 537
PspGI CCWGG 2 cut(s) 368, 466
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 639
PvuII CAGCTG 2 cut(s) 194, 544
RseI CAYNNNNRTG 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 606
SatI GCNGC 5 cut(s) 192, 195, 542, 567, 686
Sau3AI GATC 3 cut(s) 263, 496, 639
ScrFI CCNGG 2 cut(s) 370, 468
SduI GDGCHC 3 cut(s) 298, 450, 618
SetI ASST 7 cut(s) 19, 196, 469, 478, 546, 565, 594
SfcI CTRYAG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 5 cut(s) 87, 114, 126, 240, 345
SsiI CCGC 1 cut(s) 271
SspI AATATT 1 cut(s) 597
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 368, 466
TaiI ACGT 1 cut(s) 565
TaqI TCGA 2 cut(s) 262, 478
TasI AATT 5 cut(s) 87, 114, 126, 240, 345
TfiI GAWTC 3 cut(s) 95, 234, 523
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 5 cut(s) 191, 194, 541, 566, 685
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 5 cut(s) 39, 45, 87, 226, 525
TspGWI ACGGA 1 cut(s) 200
Van91I CCANNNNNTGG 2 cut(s) 167, 544
VneI GTGCAC 1 cut(s) 294
XagI CCTNNNNNAGG 1 cut(s) 471
XbaI TCTAGA 1 cut(s) 91
XspI CTAG 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.