Rroxscaffold_6G00425740

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001037
Physical Location & Seq
Reverse (-)
46745918 .. 46748503
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425740.1

Sequence Viewer

Length: 609 bp
ATGGATTCTGGAATTGATGCACCGACTCAAAATGGGGCATCGGATAACTTAGCTGATGTTGAGCTTAGATTAAATAACGATGATGCAATTCTCGGAACTTCTGTTGGGGAGGTCTCTAAAATTGGGCAAACTGAGCAAGTGGGTCAAAATTCTGCAAGCTTGGAGGTTGAAGCAGATGAACCATATGTGGGTCAGGAATTTGAATCAGAAGCAGCTGCACATGCATTTTACAATGCATATGCACTGAGAGTAGGTTTCAGAACACGTGTAAATGATCTATCTCGCTCTAGGGTTGATGGGTCTGTCATTGCTCGAACACTGGTATGTAACAAAGAGGGTTACCGAGTGGCTGATAAGCGTGATAGGAAGAGTGTGAGACCTCGGCCCCCAACTAGGGTCGGTTGCAAGGCAATGATTTCAATGAAGAAACTGAGTAATGGAAACTGGGTGGTTGCAAAGTTTGTCAAGGAGCACGCCCATTCCCTGACTCCTGGAAAGAGTGAAAACGGATTGAATGATGAATCTTCAGATATGTGTAATATATATGTATATGACACCTCTACATCTGCATCAGGGTTGTCCATTTTGATTCTGAGGATGAACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

202

Amino Acids

22.03

Weight (kDa)

5.96

Isoelectric Point (pI)

25.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 76 - 163 6.9e-29 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 148, 197
AcuI CTGAAG 1 cut(s) 510
AcvI CACGTG 1 cut(s) 266
AfiI CCNNNNNNNGG 3 cut(s) 188, 393, 394
AflIII ACRYGT 2 cut(s) 263, 265
AgsI TTSAA 4 cut(s) 170, 203, 420, 514
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 4 cut(s) 53, 64, 159, 215
AluI AGCT 4 cut(s) 53, 64, 159, 215
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 2 cut(s) 118, 370
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 2 cut(s) 212, 215
ApoI RAATTY 2 cut(s) 148, 197
AspS9I GGNCC 1 cut(s) 384
BbrPI CACGTG 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 202, 224
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 118, 370
BfaI CTAG 2 cut(s) 288, 393
BisI GCNGC 2 cut(s) 213, 216
BlsI GCNGC 2 cut(s) 214, 217
Bme1390I CCNGG 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 492
BmrI ACTGGG 1 cut(s) 454
BmsI GCATC 4 cut(s) 7, 47, 73, 578
BmuI ACTGGG 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 266
BsaI GGTCTC 2 cut(s) 118, 370
BsaJI CCNNGG 1 cut(s) 380
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 393, 394
Bse1I ACTGG 2 cut(s) 324, 449
Bse3DI GCAATG 2 cut(s) 306, 417
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 380
BseGI GGATG 1 cut(s) 603
BseLI CCNNNNNNNGG 3 cut(s) 188, 393, 394
BseMI GCAATG 2 cut(s) 306, 417
BseMII CTCAG 4 cut(s) 123, 236, 422, 584
BseNI ACTGG 2 cut(s) 324, 449
BseXI GCAGC 2 cut(s) 202, 224
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 474
BslI CCNNNNNNNGG 3 cut(s) 188, 393, 394
BsmAI GTCTC 2 cut(s) 118, 370
BsnI GGCC 1 cut(s) 385
Bso31I GGTCTC 2 cut(s) 118, 370
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 1 cut(s) 274
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 4 cut(s) 124, 237, 423, 585
BspLI GGNNCC 1 cut(s) 386
BspTNI GGTCTC 2 cut(s) 118, 370
BsrDI GCAATG 2 cut(s) 306, 417
BsrI ACTGG 2 cut(s) 324, 449
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 492
Bst6I CTCTTC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 157, 474
BstDEI CTNAG 6 cut(s) 49, 65, 132, 245, 431, 593
BstEII GGTNACC 1 cut(s) 338
BstF5I GGATG 1 cut(s) 603
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 2 cut(s) 118, 370
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 133, 221
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 1 cut(s) 224
BstPI GGTNACC 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 490
BstV1I GCAGC 2 cut(s) 202, 224
BsuRI GGCC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 603
BtsIMutI CAGTG 2 cut(s) 242, 317
Cac8I GCNNGC 2 cut(s) 157, 474
Cfr13I GGNCC 1 cut(s) 384
CviAII CATG 1 cut(s) 221
CviJI RGCY 6 cut(s) 53, 64, 159, 215, 350, 385
CviKI_1 RGCY 6 cut(s) 53, 64, 159, 215, 350, 385
DdeI CTNAG 6 cut(s) 49, 65, 132, 245, 431, 593
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco31I GGTCTC 2 cut(s) 118, 370
Eco57I CTGAAG 1 cut(s) 510
Eco72I CACGTG 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 490
EcoT22I ATGCAT 2 cut(s) 226, 238
FaeI CATG 1 cut(s) 224
FatI CATG 1 cut(s) 220
FauNDI CATATG 2 cut(s) 184, 238
Fnu4HI GCNGC 2 cut(s) 213, 216
Fsp4HI GCNGC 2 cut(s) 213, 216
FspBI CTAG 2 cut(s) 288, 393
GluI GCNGC 2 cut(s) 213, 216
HaeIII GGCC 1 cut(s) 385
Hin1II CATG 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 6 cut(s) 5, 25, 203, 487, 521, 589
Hpy188I TCNGA 6 cut(s) 43, 95, 208, 260, 529, 594
Hpy188III TCNNGA 2 cut(s) 9, 194
HpyCH4IV ACGT 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 221
HpyF3I CTNAG 6 cut(s) 49, 65, 132, 245, 431, 593
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 469
LpnPI CCDG 7 cut(s) 179, 305, 430, 477, 497, 504, 558
Lsp1109I GCAGC 2 cut(s) 202, 224
LweI GCATC 4 cut(s) 7, 47, 73, 578
MaeI CTAG 2 cut(s) 288, 393
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 2 cut(s) 326, 338
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 3 cut(s) 379, 436, 516
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 5 cut(s) 12, 87, 120, 148, 197
MlyI GAGTC 2 cut(s) 19, 481
MnlI CCTC 6 cut(s) 103, 157, 328, 390, 568, 588
Mph1103I ATGCAT 2 cut(s) 226, 238
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 322
MspA1I CMGCKG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 133, 221
NdeI CATATG 2 cut(s) 184, 238
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 386
NmeAIII GCCGAG 1 cut(s) 361
NsiI ATGCAT 2 cut(s) 226, 238
NspI RCATGY 1 cut(s) 224
PfeI GAWTC 4 cut(s) 5, 203, 521, 589
PfoI TCCNGGA 1 cut(s) 490
PkrI GCNGC 2 cut(s) 214, 217
PleI GAGTC 2 cut(s) 19, 481
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 2 cut(s) 19, 481
Ppu21I YACGTR 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 490
PspCI CACGTG 1 cut(s) 266
PspEI GGTNACC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 1 cut(s) 384
PvuII CAGCTG 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 322
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 2 cut(s) 213, 216
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 384
SchI GAGTC 2 cut(s) 19, 481
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 474
SfaNI GCATC 4 cut(s) 7, 47, 73, 578
SmiMI CAYNNNNRTG 1 cut(s) 322
Sse9I AATT 5 cut(s) 12, 87, 120, 148, 197
SspMI CTAG 2 cut(s) 288, 393
StyD4I CCNGG 1 cut(s) 490
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 313
TasI AATT 5 cut(s) 12, 87, 120, 148, 197
TfiI GAWTC 4 cut(s) 5, 203, 521, 589
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 249, 324
TseI GCWGC 2 cut(s) 212, 215
TspDTI ATGAA 3 cut(s) 192, 437, 534
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 2 cut(s) 249, 324
XapI RAATTY 2 cut(s) 148, 197
XceI RCATGY 1 cut(s) 224
XspI CTAG 2 cut(s) 288, 393
Zsp2I ATGCAT 2 cut(s) 226, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.