FvH4_4g10891

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001037
Physical Location & Seq
Forward (+)
14578235 .. 14582033
3799 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10891.t10

Sequence Viewer

Length: 759 bp
ATGGAGTTTACAATTGATGGTGATATTGATGGTGAGGTCGTGGGCAGTTCTGCTGAGATGGAAGGAAGTAGAGCAGGTGATGACAATGAAACTGGTGGAAGTTCTGTTGAAGGAGCATTCCAACTGGGTCAGGATGATAAACTAATTCTAGATTCATCCGGAAGGAATCTTATTCCATCGGCAATTCCTGTAGTATCAGTTGTTTCAGCAGATGAGCCATATGTTGGTCAAGAGTTTGAAACCGAAGCAGCTGCTCATGCATTTTATAATGCATATGCCACTCACGTGGGATTCATAATTCGTGTAAGTAAACTCTCTCGATCAAGGCGGGATGGAACTGCCATTGGCCGTGCACTTGTTTGTAATAAAGAGGGTTACAGAATGCCTGACAAGCGTGAAAAAATTGTAAGGCAAAGAGCAGAGACCAGGGTTGGTTGCAGAGCAATGATTTTGGTGAGAAAAGTAAGTTCTGGTAAATGGGTTGTCACAAAGTTTGTAAAGGAGCACACTCATCCTTTGACGCCTGGGAAAGGTCGAAGGGATTGCATCTATGATCAATATCCGAATGAACATGACAAGATTCGGGAACTATCCCAGCAGCTGGCCGTAGAGAAGAAACGTGCTGCAACATATAAAAGACATCTTGACCTAATATTTGAGCATATAGAAGAGCACAATGAGAGCCTATCAAAGAAGATCCAACACATAGTTGATAGTGTGAAAGAGATTGAAGGTAAGGAGCAGCAAGGTTATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

253

Amino Acids

28.24

Weight (kDa)

6.52

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 88 - 174 5.3e-30 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccB7I CCANNNNNTGG 2 cut(s) 224, 601
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 1 cut(s) 328
AclWI GGATC 1 cut(s) 691
AcoI YGGCCR 2 cut(s) 346, 603
AcvI CACGTG 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 521
AfiI CCNNNNNNNGG 3 cut(s) 224, 530, 601
AgsI TTSAA 3 cut(s) 110, 239, 731
AjnI CCWGG 2 cut(s) 425, 523
AleI CACNNNNGTG 1 cut(s) 284
AluBI AGCT 2 cut(s) 251, 601
AluI AGCT 2 cut(s) 251, 601
Alw21I GWGCWC 3 cut(s) 355, 507, 675
Alw26I GTCTC 1 cut(s) 416
Alw44I GTGCAC 1 cut(s) 351
AlwI GGATC 1 cut(s) 691
AlwNI CAGNNNCTG 1 cut(s) 601
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 2 cut(s) 346, 603
ApaLI GTGCAC 1 cut(s) 351
ApeKI GCWGC 5 cut(s) 248, 251, 598, 623, 742
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
AsuHPI GGTGA 4 cut(s) 32, 44, 89, 466
BaeGI GKGCMC 1 cut(s) 355
BbrPI CACGTG 1 cut(s) 286
Bbv12I GWGCWC 3 cut(s) 355, 507, 675
BbvI GCAGC 5 cut(s) 238, 260, 610, 610, 754
BccI CCATC 5 cut(s) 11, 23, 52, 184, 326
BceAI ACGGC 2 cut(s) 333, 590
BcgI CGANNNNNNTGC 4 cut(s) 233, 267, 525, 559
BciT130I CCWGG 2 cut(s) 427, 525
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 5 cut(s) 249, 252, 599, 624, 743
BlsI GCNGC 5 cut(s) 250, 253, 600, 625, 744
Bme1390I CCNGG 2 cut(s) 427, 525
BmrFI CCNGG 2 cut(s) 427, 525
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 426, 524
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 530, 601
Bse1I ACTGG 2 cut(s) 97, 129
Bse3DI GCAATG 1 cut(s) 450
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 2 cut(s) 427, 525
BseDI CCNNGG 2 cut(s) 426, 524
BseGI GGATG 4 cut(s) 139, 155, 337, 511
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 3 cut(s) 224, 530, 601
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 97, 129
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 5 cut(s) 238, 260, 610, 610, 754
BseYI CCCAGC 1 cut(s) 594
BshFI GGCC 2 cut(s) 348, 605
BsiHKAI GWGCWC 3 cut(s) 355, 507, 675
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 224, 530, 601
BsmAI GTCTC 1 cut(s) 416
BsmI GAATGC 2 cut(s) 116, 387
BsnI GGCC 2 cut(s) 348, 605
Bso31I GGTCTC 1 cut(s) 416
Bsp1286I GDGCHC 3 cut(s) 355, 507, 675
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 3 cut(s) 320, 553, 696
BspACI CCGC 1 cut(s) 328
BspANI GGCC 2 cut(s) 348, 605
BspCNI CTCAG 1 cut(s) 46
BspEI TCCGGA 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 1 cut(s) 691
BspQI GCTCTTC 1 cut(s) 663
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 2 cut(s) 97, 129
BssECI CCNNGG 2 cut(s) 426, 524
BssMI GATC 3 cut(s) 320, 553, 696
BssNI GRCGYC 1 cut(s) 521
Bst2UI CCWGG 2 cut(s) 427, 525
Bst6I CTCTTC 1 cut(s) 663
BstACI GRCGYC 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 1 cut(s) 54
BstENI CCTNNNNNAGG 1 cut(s) 528
BstF5I GGATG 4 cut(s) 139, 155, 337, 511
BstKTI GATC 3 cut(s) 323, 556, 699
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 3 cut(s) 320, 553, 696
BstMWI GCNNNNNNNGC 2 cut(s) 257, 391
BstNI CCWGG 2 cut(s) 427, 525
BstSCI CCNGG 2 cut(s) 425, 523
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 355
BstV1I GCAGC 5 cut(s) 238, 260, 610, 610, 754
BstX2I RGATCY 1 cut(s) 696
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 696
BsuRI GGCC 2 cut(s) 348, 605
BtsCI GGATG 4 cut(s) 139, 155, 337, 511
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 603
CaiI CAGNNNCTG 1 cut(s) 601
CseI GACGC 1 cut(s) 529
CviAII CATG 2 cut(s) 257, 572
CviJI RGCY 6 cut(s) 217, 251, 348, 601, 605, 684
CviKI_1 RGCY 6 cut(s) 217, 251, 348, 601, 605, 684
DdeI CTNAG 1 cut(s) 54
DpnI GATC 3 cut(s) 322, 555, 698
DpnII GATC 3 cut(s) 320, 553, 696
EaeI YGGCCR 2 cut(s) 346, 603
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco31I GGTCTC 1 cut(s) 416
Eco72I CACGTG 1 cut(s) 286
EcoNI CCTNNNNNAGG 1 cut(s) 528
EcoRII CCWGG 2 cut(s) 425, 523
EcoT22I ATGCAT 2 cut(s) 262, 274
FaeI CATG 2 cut(s) 260, 575
FatI CATG 2 cut(s) 256, 571
FauI CCCGC 1 cut(s) 321
FauNDI CATATG 2 cut(s) 220, 274
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 5 cut(s) 249, 252, 599, 624, 743
FokI GGATG 4 cut(s) 142, 146, 344, 498
Fsp4HI GCNGC 5 cut(s) 249, 252, 599, 624, 743
FspBI CTAG 1 cut(s) 149
GluI GCNGC 5 cut(s) 249, 252, 599, 624, 743
GsaI CCCAGC 1 cut(s) 598
HaeIII GGCC 2 cut(s) 348, 605
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 529
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 2 cut(s) 260, 575
HinfI GANTC 4 cut(s) 152, 166, 291, 580
HpaII CCGG 1 cut(s) 159
HphI GGTGA 4 cut(s) 32, 44, 89, 466
Hpy166II GTNNAC 3 cut(s) 9, 311, 353
Hpy188I TCNGA 1 cut(s) 564
Hpy188III TCNNGA 7 cut(s) 131, 149, 159, 230, 318, 584, 644
Hpy8I GTNNAC 3 cut(s) 9, 311, 353
HpyAV CCTTC 5 cut(s) 56, 104, 156, 531, 725
HpyCH4IV ACGT 2 cut(s) 285, 619
HpyCH4V TGCA 6 cut(s) 260, 272, 353, 438, 546, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 391
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 2 cut(s) 285, 619
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 2 cut(s) 260, 575
Kpn2I TCCGGA 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 3 cut(s) 320, 553, 696
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 3 cut(s) 113, 502, 739
Lsp1109I GCAGC 5 cut(s) 238, 260, 610, 610, 754
LweI GCATC 1 cut(s) 555
MaeI CTAG 1 cut(s) 149
MaeII ACGT 2 cut(s) 285, 619
MaeIII GTNAC 2 cut(s) 374, 484
MalI GATC 3 cut(s) 322, 555, 698
MboI GATC 3 cut(s) 320, 553, 696
MboII GAAGA 3 cut(s) 625, 680, 706
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 696
MhlI GDGCHC 3 cut(s) 355, 507, 675
MluCI AATT 5 cut(s) 12, 144, 183, 297, 402
MmeI TCCRAC 2 cut(s) 145, 724
MnlI CCTC 2 cut(s) 28, 364
Mph1103I ATGCAT 2 cut(s) 262, 274
MroI TCCGGA 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 2 cut(s) 251, 601
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 427, 525
MunI CAATTG 1 cut(s) 12
Mva1269I GAATGC 2 cut(s) 116, 387
MvaI CCWGG 2 cut(s) 427, 525
MwoI GCNNNNNNNGC 2 cut(s) 257, 391
NdeI CATATG 2 cut(s) 220, 274
NdeII GATC 3 cut(s) 320, 553, 696
NlaIII CATG 2 cut(s) 260, 575
NmuCI GTSAC 1 cut(s) 484
NsiI ATGCAT 2 cut(s) 262, 274
OliI CACNNNNGTG 1 cut(s) 284
PaqCI CACCTGC 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 663
PctI GAATGC 2 cut(s) 116, 387
PfeI GAWTC 4 cut(s) 152, 166, 291, 580
PflMI CCANNNNNTGG 2 cut(s) 224, 601
PkrI GCNGC 5 cut(s) 250, 253, 600, 625, 744
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 286
PsiI TTATAA 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 425, 523
PspCI CACGTG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 594
PspGI CCWGG 2 cut(s) 425, 523
PstNI CAGNNNCTG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 696
PvuII CAGCTG 2 cut(s) 251, 601
RseI CAYNNNNRTG 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 663
SatI GCNGC 5 cut(s) 249, 252, 599, 624, 743
Sau3AI GATC 3 cut(s) 320, 553, 696
ScrFI CCNGG 2 cut(s) 427, 525
SduI GDGCHC 3 cut(s) 355, 507, 675
SfaNI GCATC 1 cut(s) 555
SfcI CTRYAG 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 5 cut(s) 12, 144, 183, 297, 402
SsiI CCGC 1 cut(s) 328
SspI AATATT 1 cut(s) 654
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 425, 523
TaiI ACGT 2 cut(s) 288, 622
TaqI TCGA 2 cut(s) 319, 535
TasI AATT 5 cut(s) 12, 144, 183, 297, 402
TfiI GAWTC 4 cut(s) 152, 166, 291, 580
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 5 cut(s) 248, 251, 598, 623, 742
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 4 cut(s) 102, 144, 283, 582
Van91I CCANNNNNTGG 2 cut(s) 224, 601
VneI GTGCAC 1 cut(s) 351
XagI CCTNNNNNAGG 1 cut(s) 528
XbaI TCTAGA 1 cut(s) 148
XspI CTAG 1 cut(s) 149
Zsp2I ATGCAT 2 cut(s) 262, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.