Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Forward (+)

30585953 .. 30587946

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G364200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATTCTGTATTTGATACAGAGGCTCAAAATGGGCTCTTAGATAATTCAGCAGATGTTGAGCTTAGATTAAATCATGATGGTGCAATTCTAGCAACTTGTGTTGTCGAGGAGGCTTCTAGTCTTGAGCAAATTGAGCAAGTGGGTCAAAATTCTTCAAGAGTGGAACAAAATGCAGTTGAAGGAGACGAACCATATCTGGGCCAGGAATTCGACTCAGAAGCAGCTGCACATGCATTTTATAATGCATATGCACTGAGAATAGGTTTCAGAACACGTGTGAACGATCTATCTCGTTCTAGGGTCGATGGCTCCATCATTGCTCGAACGCTAGTATGTAACAAAGAGGGTTACCGAGTGGCTGATAAGCGTGAGAGAATGAGTGTGAGACCTCGACCCCCCACTAGGGTTGGTTGCAAGGCAATGATTTCAGTTAAGAAACTGAGTATTGGAAAGTGGGTAGTTGCAAAGTTTGTCAAGGAGCATACCCATACACTGTCTCCAGGGAAGGGTAAAAAAGGATCGAATGATCAATCTACTACGGATGAACAGATGAAAATCAAAGAACTAACTCAACAACTGCTGGTTGAGAGAAAGCGGTCTGCTTCATATAGAAAAATCATAGACCTCCTATTCAATCACATTGAAGAGCACACTCAAAACCTGTCGCAAAAGATCCAGCGCATAACTGATAATCTCCAAGAAATTGTATCATCCGAGGGAAAGGGAAAAGACCGTCGAAATGTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

251

Amino Acids

28.1

Weight (kDa)

8.36

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AciI	CCGC	1 cut(s)	598
AclWI	GGATC	2 cut(s)	529, 670
AcsI	RAATTY	2 cut(s)	151, 209
AcvI	CACGTG	1 cut(s)	278
AfiI	CCNNNNNNNGG	4 cut(s)	200, 405, 406, 509
AflIII	ACRYGT	2 cut(s)	275, 277
AgsI	TTSAA	4 cut(s)	159, 182, 637, 647
AjnI	CCWGG	2 cut(s)	204, 502
AluBI	AGCT	2 cut(s)	64, 227
AluI	AGCT	2 cut(s)	64, 227
Alw21I	GWGCWC	1 cut(s)	654
Alw26I	GTCTC	3 cut(s)	180, 382, 504
AlwI	GGATC	2 cut(s)	529, 670
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	224, 227
ApoI	RAATTY	2 cut(s)	151, 209
AspLEI	GCGC	1 cut(s)	684
AspS9I	GGNCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	39
BbrPI	CACGTG	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	654
BbvI	GCAGC	2 cut(s)	214, 236
BccI	CCATC	3 cut(s)	74, 302, 323
BciT130I	CCWGG	2 cut(s)	206, 504
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	3 cut(s)	180, 382, 504
BfaI	CTAG	6 cut(s)	92, 120, 300, 332, 405, 751
BisI	GCNGC	2 cut(s)	225, 228
BlsI	GCNGC	2 cut(s)	226, 229
Bme1390I	CCNGG	2 cut(s)	206, 504
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	206, 504
BpmI	CTGGAG	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	503, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 405, 406, 509
Bse3DI	GCAATG	2 cut(s)	318, 429
Bse8I	GATNNNNATC	1 cut(s)	557
BseBI	CCWGG	2 cut(s)	206, 504
BseDI	CCNNGG	2 cut(s)	503, 717
BseGI	GGATG	2 cut(s)	550, 713
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	4 cut(s)	200, 405, 406, 509
BseMI	GCAATG	2 cut(s)	318, 429
BseMII	CTCAG	3 cut(s)	231, 248, 434
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	214, 236
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	654
BslI	CCNNNNNNNGG	4 cut(s)	200, 405, 406, 509
BsmAI	GTCTC	3 cut(s)	180, 382, 504
BsmBI	CGTCTC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	39, 654
Bsp143I	GATC	4 cut(s)	286, 521, 529, 675
BspACI	CCGC	1 cut(s)	598
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	3 cut(s)	230, 249, 435
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	529, 670
BspQI	GCTCTTC	1 cut(s)	642
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	318, 429
BssECI	CCNNGG	2 cut(s)	503, 717
BssMI	GATC	4 cut(s)	286, 521, 529, 675
Bst2UI	CCWGG	2 cut(s)	206, 504
Bst4CI	ACNGT	2 cut(s)	498, 737
Bst6I	CTCTTC	1 cut(s)	642
BstBAI	YACGTR	1 cut(s)	278
BstDEI	CTNAG	5 cut(s)	40, 65, 217, 257, 443
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	550, 713
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	4 cut(s)	289, 524, 532, 678
BstMAI	GTCTC	3 cut(s)	180, 382, 504
BstMBI	GATC	4 cut(s)	286, 521, 529, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 136, 233
BstNI	CCWGG	2 cut(s)	206, 504
BstNSI	RCATGY	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	204, 502
BstV1I	GCAGC	2 cut(s)	214, 236
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	550, 713
BtsIMutI	CAGTG	2 cut(s)	254, 494
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	2 cut(s)	77, 233
CviJI	RGCY	8 cut(s)	26, 37, 64, 116, 204, 227, 312, 362
CviKI_1	RGCY	8 cut(s)	26, 37, 64, 116, 204, 227, 312, 362
DdeI	CTNAG	5 cut(s)	40, 65, 217, 257, 443
DpnI	GATC	4 cut(s)	288, 523, 531, 677
DpnII	GATC	4 cut(s)	286, 521, 529, 675
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	382
Eco72I	CACGTG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	204, 502
EcoT22I	ATGCAT	2 cut(s)	238, 250
EcoT38I	GRGCYC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	2 cut(s)	80, 236
FatI	CATG	2 cut(s)	76, 232
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	225, 228
FokI	GGATG	2 cut(s)	557, 700
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	225, 228
FspBI	CTAG	6 cut(s)	92, 120, 300, 332, 405, 751
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	2 cut(s)	225, 228
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	684
Hin1II	CATG	2 cut(s)	80, 236
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HinfI	GANTC	2 cut(s)	5, 215
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	220, 272, 718
Hpy188III	TCNNGA	3 cut(s)	77, 125, 159
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	2 cut(s)	176, 502
HpyCH4III	ACNGT	2 cut(s)	498, 737
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	8 cut(s)	86, 176, 230, 236, 248, 254, 417, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 136, 233
HpyF3I	CTNAG	5 cut(s)	40, 65, 217, 257, 443
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	80, 236
HspAI	GCGC	1 cut(s)	682
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	286, 521, 529, 675
LguI	GCTCTTC	1 cut(s)	642
LmnI	GCTCC	2 cut(s)	317, 481
LpnPI	CCDG	8 cut(s)	185, 191, 218, 489, 516, 569, 677, 692
Lsp1109I	GCAGC	2 cut(s)	214, 236
MaeI	CTAG	6 cut(s)	92, 120, 300, 332, 405, 751
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	2 cut(s)	338, 350
MalI	GATC	4 cut(s)	288, 523, 531, 677
MboI	GATC	4 cut(s)	286, 521, 529, 675
MboII	GAAGA	2 cut(s)	147, 659
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	2 cut(s)	39, 654
MluCI	AATT	6 cut(s)	46, 87, 132, 151, 209, 705
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	16, 103, 106, 340, 402, 638, 712
Mph1103I	ATGCAT	2 cut(s)	238, 250
MseI	TTAA	2 cut(s)	71, 435
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	206, 504
MvaI	CCWGG	2 cut(s)	206, 504
MwoI	GCNNNNNNNGC	3 cut(s)	92, 136, 233
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	4 cut(s)	286, 521, 529, 675
NlaIII	CATG	2 cut(s)	80, 236
NlaIV	GGNNCC	1 cut(s)	313
NsiI	ATGCAT	2 cut(s)	238, 250
NspI	RCATGY	1 cut(s)	236
PagI	TCATGA	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	226, 229
PleI	GAGTC	1 cut(s)	209
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	204, 502
PspCI	CACGTG	1 cut(s)	278
PspEI	GGTNACC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	204, 502
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	2 cut(s)	71, 435
SatI	GCNGC	2 cut(s)	225, 228
Sau3AI	GATC	4 cut(s)	286, 521, 529, 675
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	206, 504
SduI	GDGCHC	2 cut(s)	39, 654
SetI	ASST	7 cut(s)	66, 229, 268, 280, 394, 630, 666
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	6 cut(s)	46, 87, 132, 151, 209, 705
SsiI	CCGC	1 cut(s)	598
SspMI	CTAG	6 cut(s)	92, 120, 300, 332, 405, 751
StyD4I	CCNGG	2 cut(s)	204, 502
TaaI	ACNGT	2 cut(s)	498, 737
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	7 cut(s)	108, 213, 306, 325, 394, 524, 739
TasI	AATT	6 cut(s)	46, 87, 132, 151, 209, 705
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	71, 435
Tru9I	TTAA	2 cut(s)	71, 435
TscAI	CASTG	2 cut(s)	261, 501
TseI	GCWGC	2 cut(s)	224, 227
TspDTI	ATGAA	3 cut(s)	561, 569, 597
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	2 cut(s)	261, 501
XapI	RAATTY	2 cut(s)	151, 209
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	6 cut(s)	92, 120, 300, 332, 405, 751
Zsp2I	ATGCAT	2 cut(s)	238, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.