Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Reverse (-)

4986768 .. 4990770

Gene Structure 4003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1042200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAACTTAGTAGAGCAGCTGATGAAAATGAAACCGGCGGTAGTTCTGTTGAAGGGGCATTCCAGTTGGGCCTGGATGATAAAATAAATGTAGATTCTCCCGGAGGGGATATAATTCCAGAAGCAGTTCCTGTAGTATCGGTGGTTTCCGCAGATGAGCCATATGTTGGTCAAGAGTTTGAAACTGAAGCAGCTGCTCATGCATTTTATAATGCATATGCCACACATGTGGGATTCATAATTCGTGTAAGCAAGCTCTCTCGATCAAGGCGCGATGGATCTGCCATTGGTCGTGCACTTGTTTGTAACAAAGAGGGTTATAGAATGCCTGACAAACGTGAAAAAATTGTAAGGCAAAGAGCCGAGACCAGGGTTGGTTGCAGAGCAATGATTTTGGTGAGGAAAGTAACTTCTGGGAAATGGGTTGTCACAAAATTTGTAAAGGAGCACACTCATCCTTTGACACCTGGGAAAGGTCGAAGGGATTGCATTTATGATCAATATCCGAATGAGCATGACAAGATTCGGGAATTATCTCAGCAGTTGGCCATAGAGAAAAAGCGTGCTGTGACCTATAAAAGACATCTGGAACTAATTTTTGAGCACATTGAAGAACACAACGAGAGCCTATCAAAAAAGATCCAACACATAGTAGACAGTGTGAAGGAGATTGAAGGCAAAGAACTGCAAGGACACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

234

Amino Acids

26.3

Weight (kDa)

7.77

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	69 - 155	4.6e-30	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	1 cut(s)	273
AciI	CCGC	2 cut(s)	39, 150
AclWI	GGATC	2 cut(s)	286, 634
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	207
AfiI	CCNNNNNNNGG	3 cut(s)	167, 369, 473
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	53, 182, 611, 674
AjnI	CCWGG	3 cut(s)	72, 368, 466
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	3 cut(s)	20, 194, 256
AluI	AGCT	3 cut(s)	20, 194, 256
Alw21I	GWGCWC	3 cut(s)	298, 450, 606
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	286, 634
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	70, 546
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	17, 191, 194
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	548
Bbv12I	GWGCWC	3 cut(s)	298, 450, 606
BbvI	GCAGC	3 cut(s)	29, 181, 203
BccI	CCATC	1 cut(s)	269
BcgI	CGANNNNNNTGC	4 cut(s)	263, 297, 468, 502
BciT130I	CCWGG	3 cut(s)	74, 370, 468
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	3 cut(s)	18, 192, 195
BlsI	GCNGC	3 cut(s)	19, 193, 196
Bme1390I	CCNGG	4 cut(s)	74, 102, 370, 468
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	4 cut(s)	74, 102, 370, 468
BpuMI	CCSGG	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	369, 467
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 369, 473
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	3 cut(s)	74, 370, 468
BseDI	CCNNGG	2 cut(s)	369, 467
BseGI	GGATG	2 cut(s)	82, 454
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	3 cut(s)	167, 369, 473
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	29, 181, 203
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	72, 548
BsiHKAI	GWGCWC	3 cut(s)	298, 450, 606
BsiSI	CCGG	2 cut(s)	36, 102
BslI	CCNNNNNNNGG	3 cut(s)	167, 369, 473
BsmAI	GTCTC	1 cut(s)	359
BsmI	GAATGC	2 cut(s)	59, 330
BsnI	GGCC	2 cut(s)	72, 548
Bso31I	GGTCTC	1 cut(s)	359
Bsp1286I	GDGCHC	3 cut(s)	298, 450, 606
Bsp143I	GATC	4 cut(s)	263, 278, 496, 639
BspACI	CCGC	2 cut(s)	39, 150
BspANI	GGCC	2 cut(s)	72, 548
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	273
BspPI	GGATC	2 cut(s)	286, 634
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	369, 467
BssMI	GATC	4 cut(s)	263, 278, 496, 639
Bst2UI	CCWGG	3 cut(s)	74, 370, 468
Bst4CI	ACNGT	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	254, 564
BstDEI	CTNAG	2 cut(s)	8, 537
BstENI	CCTNNNNNAGG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	82, 454
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	4 cut(s)	266, 281, 499, 642
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	4 cut(s)	263, 278, 496, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	3 cut(s)	74, 370, 468
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	4 cut(s)	72, 100, 368, 466
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	29, 181, 203
BstX2I	RGATCY	2 cut(s)	278, 639
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	2 cut(s)	278, 639
BsuRI	GGCC	2 cut(s)	72, 548
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	82, 454
BtsIMutI	CAGTG	1 cut(s)	664
Cac8I	GCNNGC	2 cut(s)	254, 564
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	70
CviAII	CATG	3 cut(s)	200, 227, 515
CviJI	RGCY	8 cut(s)	20, 72, 160, 194, 256, 362, 548, 627
CviKI_1	RGCY	8 cut(s)	20, 72, 160, 194, 256, 362, 548, 627
DdeI	CTNAG	2 cut(s)	8, 537
DpnI	GATC	4 cut(s)	265, 280, 498, 641
DpnII	GATC	4 cut(s)	263, 278, 496, 639
EaeI	YGGCCR	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	207
EcoNI	CCTNNNNNAGG	1 cut(s)	471
EcoRII	CCWGG	3 cut(s)	72, 368, 466
EcoT22I	ATGCAT	2 cut(s)	205, 217
FaeI	CATG	3 cut(s)	203, 230, 518
FatI	CATG	3 cut(s)	199, 226, 514
FauNDI	CATATG	2 cut(s)	163, 217
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	3 cut(s)	18, 192, 195
FokI	GGATG	2 cut(s)	89, 441
Fsp4HI	GCNGC	3 cut(s)	18, 192, 195
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	18, 192, 195
HaeIII	GGCC	2 cut(s)	72, 548
HapII	CCGG	2 cut(s)	36, 102
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	203, 230, 518
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	3 cut(s)	95, 234, 523
HpaII	CCGG	2 cut(s)	36, 102
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	296, 655
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	5 cut(s)	119, 173, 261, 527, 587
Hpy8I	GTNNAC	2 cut(s)	296, 655
HpyAV	CCTTC	4 cut(s)	47, 474, 658, 668
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	6 cut(s)	203, 215, 296, 381, 489, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	8, 537
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	203, 230, 518
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	263, 278, 496, 639
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	3 cut(s)	29, 181, 203
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	4 cut(s)	305, 406, 427, 568
MalI	GATC	4 cut(s)	265, 280, 498, 641
MboI	GATC	4 cut(s)	263, 278, 496, 639
MboII	GAAGA	1 cut(s)	623
MflI	RGATCY	2 cut(s)	278, 639
MhlI	GDGCHC	3 cut(s)	298, 450, 606
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	6 cut(s)	114, 240, 345, 434, 530, 594
MluNI	TGGCCA	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	3 cut(s)	98, 307, 393
Mox20I	TGGCCA	1 cut(s)	548
Mph1103I	ATGCAT	2 cut(s)	205, 217
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	548
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	2 cut(s)	20, 194
MspI	CCGG	2 cut(s)	36, 102
MspR9I	CCNGG	4 cut(s)	74, 102, 370, 468
Mva1269I	GAATGC	2 cut(s)	59, 330
MvaI	CCWGG	3 cut(s)	74, 370, 468
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	102
NdeI	CATATG	2 cut(s)	163, 217
NdeII	GATC	4 cut(s)	263, 278, 496, 639
NlaIII	CATG	3 cut(s)	203, 230, 518
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	2 cut(s)	427, 568
NsiI	ATGCAT	2 cut(s)	205, 217
NspI	RCATGY	1 cut(s)	230
OliI	CACNNNNGTG	1 cut(s)	227
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	2 cut(s)	59, 330
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	3 cut(s)	95, 234, 523
PflMI	CCANNNNNTGG	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	19, 193, 196
PscI	ACATGT	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	72, 368, 466
PspGI	CCWGG	3 cut(s)	72, 368, 466
PspPI	GGNCC	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	278, 639
PvuII	CAGCTG	2 cut(s)	20, 194
RseI	CAYNNNNRTG	1 cut(s)	227
SatI	GCNGC	3 cut(s)	18, 192, 195
Sau3AI	GATC	4 cut(s)	263, 278, 496, 639
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	4 cut(s)	74, 102, 370, 468
SduI	GDGCHC	3 cut(s)	298, 450, 606
SetI	ASST	7 cut(s)	22, 196, 258, 340, 469, 478, 575
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	6 cut(s)	114, 240, 345, 434, 530, 594
SsiI	CCGC	2 cut(s)	39, 150
StyD4I	CCNGG	4 cut(s)	72, 100, 368, 466
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	262, 478
TasI	AATT	6 cut(s)	114, 240, 345, 434, 530, 594
TfiI	GAWTC	3 cut(s)	95, 234, 523
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	2 cut(s)	427, 568
TseI	GCWGC	3 cut(s)	17, 191, 194
Tsp45I	GTSAC	2 cut(s)	427, 568
TspDTI	ATGAA	3 cut(s)	39, 45, 226
TspRI	CASTG	1 cut(s)	664
Van91I	CCANNNNNTGG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	471
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	126
Zsp2I	ATGCAT	2 cut(s)	205, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.