Rmu_sc0003550.1_g000012

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003550.1
OG0001037
Physical Location & Seq
Forward (+)
66795 .. 71767
4973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003550.1_g000012.1.cds

Sequence Viewer

Length: 1482 bp
atggagctcggtggtgctgcagaaagcaagggagagagtttcatgatctcgaaggcttcaaaaaacaccaccttcccttctctaagtttgaccgtgaaggaaggaaaggaatcaaagacggtaaaacacatgactcaaaatggggcatcggatgacttggctgatgttgagcttagattaaataacgatgatgcaattctcggaacttctgttggggaggtctctaatattgggcaaactgagcaagtgggtcaaaattctgcaagcttggaggttgaagcagatgaaccatatgtgggtcaggaatttgaatcagaagcagctgcacatgcattttacaatgcatatgcactgagagtaggtttcagaacacgtgtaaacgatctatctcgctctagggttgatgggtctgtcattgctcgaacactggtatgtaacaaagagggttatcgagtggctgataagcgtgataggaagagtgtgagacctcggcccccaactagggttggttgcaaggcaatgatttcaatgaagaaactgagtaatggaaactgggtggttgcaaagtttgtcaaggagcacgcccattccctgactcctggaaagagtgaaaacggattgaatgatgaatcttcagatgaacagataaaaatcaaagaattaactcaacagctgatggttgagcgaaagaggtctgcttcatatagaaaaatcatagacctcctgtttaatcacattgacgaccacactcaacacctctcacaaaagatcctgcgcgttaatgacattctcaaagacatcgcatcctctgaagcaaaaggccgttcgataggcactgatcagggaaaaccagtcattttcattgcagaatttacttatgattccctgaatttgcatatttttgcagtggattcggtacttgatataaatgttaatgaggaggtgtcaactggttcaactgataccgagttcaagcattctaatgatggtgccttggtaggcacttctcttcagaagatactttgggttgtacaaaatgatgaaagaactcaaaactcttctaaagatggatctgtagtcgaagtagatgagccatatgtgggtcaggaatttgatacagaagtaaatgcacaggcattttataatgtctatggcttgcgtatgggtttcaatactcgtatgaactatctgtctcgatccaaacatgatggaactatcattgcacgaacatttgtatgcagcaaagagggttaccggaagcctgataggcgtgacaagaagactgtaaacccacgcgctcccactagggtaggttgtatggcaatgctgtcgataaaaaaactgaatatcggcaagtgggttgttactaagtttatcaaggagcacaatcatgcattgatagcgagcaaacgtccaaaagggttgattgaggatcaaataccggtcagttattgtgatattctatattctttcttaacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

493

Amino Acids

54.95

Weight (kDa)

8.09

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1143
AccB1I GGYRCC 1 cut(s) 989
AccII CGCG 2 cut(s) 777, 1296
AclWI GGATC 4 cut(s) 763, 1078, 1191, 1440
AcsI RAATTY 5 cut(s) 256, 305, 869, 889, 1109
AcuI CTGAAG 3 cut(s) 618, 831, 995
AcvI CACGTG 1 cut(s) 374
AfaI GTAC 2 cut(s) 918, 1032
AfiI CCNNNNNNNGG 4 cut(s) 296, 501, 502, 1100
AflIII ACRYGT 2 cut(s) 371, 373
AgeI ACCGGT 1 cut(s) 1441
AgsI TTSAA 8 cut(s) 60, 278, 311, 528, 622, 957, 973, 1171
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 5 cut(s) 7, 172, 267, 323, 673
AluI AGCT 5 cut(s) 7, 172, 267, 323, 673
Alw21I GWGCWC 3 cut(s) 9, 582, 1386
Alw26I GTCTC 3 cut(s) 226, 478, 1197
AlwI GGATC 4 cut(s) 763, 1078, 1191, 1440
AoxI GGCC 2 cut(s) 491, 820
ApeKI GCWGC 4 cut(s) 17, 320, 323, 1239
ApoI RAATTY 5 cut(s) 256, 305, 869, 889, 1109
AsiGI ACCGGT 1 cut(s) 1441
AspLEI GCGC 2 cut(s) 777, 1298
AspS9I GGNCC 1 cut(s) 492
BaeI ACNNNNGTAYC 2 cut(s) 1107, 1140
BanI GGYRCC 1 cut(s) 989
BanII GRGCYC 1 cut(s) 9
BbrPI CACGTG 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 1286
Bbv12I GWGCWC 3 cut(s) 9, 582, 1386
BbvI GCAGC 4 cut(s) 4, 310, 332, 1251
BccI CCATC 5 cut(s) 398, 670, 980, 1061, 1202
BceAI ACGGC 1 cut(s) 807
BcgI CGANNNNNNTGC 4 cut(s) 894, 928, 1311, 1345
BciT130I CCWGG 1 cut(s) 600
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 3 cut(s) 226, 478, 1197
BfaI CTAG 3 cut(s) 396, 501, 1305
BfmI CTRYAG 2 cut(s) 18, 1074
BglI GCCNNNNNGGC 1 cut(s) 1267
BisI GCNGC 4 cut(s) 18, 321, 324, 1240
BlsI GCNGC 4 cut(s) 19, 322, 325, 1241
Bme1390I CCNGG 1 cut(s) 600
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 2 cut(s) 494, 991
BmrFI CCNGG 1 cut(s) 600
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 3 cut(s) 155, 181, 812
BmuI ACTGGG 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 1286
BsaAI YACGTR 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 650
BsaI GGTCTC 2 cut(s) 226, 478
BsaJI CCNNGG 2 cut(s) 488, 993
BsaWI WCCGGW 2 cut(s) 1254, 1441
Bsc4I CCNNNNNNNGG 4 cut(s) 296, 501, 502, 1100
Bse118I RCCGGY 1 cut(s) 1441
Bse1I ACTGG 4 cut(s) 432, 557, 851, 955
Bse3DI GCAATG 5 cut(s) 414, 525, 861, 1218, 1329
Bse8I GATNNNNATC 1 cut(s) 650
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 2 cut(s) 488, 993
BseGI GGATG 2 cut(s) 157, 803
BseJI GATNNNNATC 1 cut(s) 650
BseLI CCNNNNNNNGG 4 cut(s) 296, 501, 502, 1100
BseMI GCAATG 5 cut(s) 414, 525, 861, 1218, 1329
BseMII CTCAG 3 cut(s) 231, 344, 530
BseNI ACTGG 4 cut(s) 432, 557, 851, 955
BseRI GAGGAG 1 cut(s) 953
BseXI GCAGC 4 cut(s) 4, 310, 332, 1251
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 2 cut(s) 777, 1296
BshFI GGCC 2 cut(s) 493, 822
BshNI GGYRCC 1 cut(s) 989
BshTI ACCGGT 1 cut(s) 1441
BsiHKAI GWGCWC 3 cut(s) 9, 582, 1386
BsiSI CCGG 2 cut(s) 1255, 1442
BslI CCNNNNNNNGG 4 cut(s) 296, 501, 502, 1100
BsmAI GTCTC 3 cut(s) 226, 478, 1197
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 2 cut(s) 493, 822
Bso31I GGTCTC 2 cut(s) 226, 478
Bsp1286I GDGCHC 3 cut(s) 9, 582, 1386
Bsp1407I TGTACA 1 cut(s) 1030
Bsp143I GATC 7 cut(s) 45, 382, 768, 838, 1070, 1196, 1432
BspANI GGCC 2 cut(s) 493, 822
BspCNI CTCAG 3 cut(s) 232, 345, 531
BspFNI CGCG 2 cut(s) 777, 1296
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 494, 991
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 4 cut(s) 763, 1078, 1191, 1440
BspT107I GGYRCC 1 cut(s) 989
BspTNI GGTCTC 2 cut(s) 226, 478
BsrDI GCAATG 5 cut(s) 414, 525, 861, 1218, 1329
BsrFI RCCGGY 1 cut(s) 1441
BsrGI TGTACA 1 cut(s) 1030
BsrI ACTGG 4 cut(s) 432, 557, 851, 955
BssAI RCCGGY 1 cut(s) 1441
BssECI CCNNGG 2 cut(s) 488, 993
BssMI GATC 7 cut(s) 45, 382, 768, 838, 1070, 1196, 1432
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 3 cut(s) 94, 121, 1285
Bst6I CTCTTC 3 cut(s) 470, 1014, 1063
BstAUI TGTACA 1 cut(s) 1030
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 4 cut(s) 265, 582, 1157, 1405
BstDEI CTNAG 7 cut(s) 83, 173, 240, 353, 539, 1368, 1479
BstEII GGTNACC 1 cut(s) 1250
BstF5I GGATG 2 cut(s) 157, 803
BstFNI CGCG 2 cut(s) 777, 1296
BstHHI GCGC 2 cut(s) 777, 1298
BstKTI GATC 7 cut(s) 48, 385, 771, 841, 1073, 1199, 1435
BstMAI GTCTC 3 cut(s) 226, 478, 1197
BstMBI GATC 7 cut(s) 45, 382, 768, 838, 1070, 1196, 1432
BstMWI GCNNNNNNNGC 4 cut(s) 241, 329, 1267, 1400
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 1 cut(s) 332
BstPI GGTNACC 1 cut(s) 1250
BstSCI CCNGG 1 cut(s) 598
BstSFI CTRYAG 2 cut(s) 18, 1074
BstUI CGCG 2 cut(s) 777, 1296
BstV1I GCAGC 4 cut(s) 4, 310, 332, 1251
BstV2I GAAGAC 1 cut(s) 1286
BstX2I RGATCY 2 cut(s) 768, 1070
BstYI RGATCY 2 cut(s) 768, 1070
BsuRI GGCC 2 cut(s) 493, 822
BtgZI GCGATG 1 cut(s) 784
BtsCI GGATG 2 cut(s) 157, 803
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 4 cut(s) 350, 425, 834, 912
Cac8I GCNNGC 4 cut(s) 265, 582, 1157, 1405
CciI TCATGA 1 cut(s) 42
CfoI GCGC 2 cut(s) 777, 1298
Cfr10I RCCGGY 1 cut(s) 1441
Cfr13I GGNCC 1 cut(s) 492
Csp6I GTAC 2 cut(s) 917, 1031
CspAI ACCGGT 1 cut(s) 1441
CviAII CATG 5 cut(s) 43, 130, 329, 1205, 1391
CviQI GTAC 2 cut(s) 917, 1031
DdeI CTNAG 7 cut(s) 83, 173, 240, 353, 539, 1368, 1479
DpnI GATC 7 cut(s) 47, 384, 770, 840, 1072, 1198, 1434
DpnII GATC 7 cut(s) 45, 382, 768, 838, 1070, 1196, 1432
Eam1104I CTCTTC 3 cut(s) 470, 1014, 1063
EarI CTCTTC 3 cut(s) 470, 1014, 1063
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 226, 478
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 3 cut(s) 618, 831, 995
Eco72I CACGTG 1 cut(s) 374
Eco91I GGTNACC 1 cut(s) 1250
EcoICRI GAGCTC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 1250
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 993
EcoT22I ATGCAT 3 cut(s) 334, 346, 1396
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 5 cut(s) 46, 133, 332, 1208, 1394
FatI CATG 5 cut(s) 42, 129, 328, 1204, 1390
FauNDI CATATG 3 cut(s) 292, 346, 1096
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 4 cut(s) 18, 321, 324, 1240
FokI GGATG 2 cut(s) 164, 790
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 4 cut(s) 18, 321, 324, 1240
FspBI CTAG 3 cut(s) 396, 501, 1305
GlaI GCGC 2 cut(s) 776, 1297
GluI GCNGC 4 cut(s) 18, 321, 324, 1240
HaeIII GGCC 2 cut(s) 493, 822
HapII CCGG 2 cut(s) 1255, 1442
HhaI GCGC 2 cut(s) 777, 1298
Hin1II CATG 5 cut(s) 46, 133, 332, 1208, 1394
Hin6I GCGC 2 cut(s) 775, 1296
HinP1I GCGC 2 cut(s) 775, 1296
HincII GTYRAC 1 cut(s) 948
HindII GTYRAC 1 cut(s) 948
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 7 cut(s) 110, 133, 311, 595, 629, 881, 911
HpaII CCGG 2 cut(s) 1255, 1442
Hpy166II GTNNAC 3 cut(s) 379, 948, 1288
Hpy188I TCNGA 7 cut(s) 151, 203, 316, 368, 637, 811, 1014
Hpy188III TCNNGA 5 cut(s) 43, 49, 302, 1106, 1194
Hpy8I GTNNAC 3 cut(s) 379, 948, 1288
HpyAV CCTTC 5 cut(s) 46, 82, 87, 91, 95
HpyCH4III ACNGT 3 cut(s) 94, 121, 1285
HpyCH4IV ACGT 2 cut(s) 373, 1411
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 329, 1267, 1400
HpyF3I CTNAG 7 cut(s) 83, 173, 240, 353, 539, 1368, 1479
HpySE526I ACGT 2 cut(s) 373, 1411
Hsp92II CATG 5 cut(s) 46, 133, 332, 1208, 1394
HspAI GCGC 2 cut(s) 775, 1296
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 7 cut(s) 45, 382, 768, 838, 1070, 1196, 1432
LmnI GCTCC 4 cut(s) 4, 577, 1303, 1381
Lsp1109I GCAGC 4 cut(s) 4, 310, 332, 1251
LweI GCATC 3 cut(s) 155, 181, 812
MaeI CTAG 3 cut(s) 396, 501, 1305
MaeII ACGT 2 cut(s) 373, 1411
MaeIII GTNAC 4 cut(s) 434, 1250, 1271, 1363
MalI GATC 7 cut(s) 47, 384, 770, 840, 1072, 1198, 1434
MboI GATC 7 cut(s) 45, 382, 768, 838, 1070, 1196, 1432
MboII GAAGA 7 cut(s) 487, 544, 624, 1001, 1027, 1050, 1291
MflI RGATCY 2 cut(s) 768, 1070
MhlI GDGCHC 3 cut(s) 9, 582, 1386
MluCI AATT 7 cut(s) 195, 256, 305, 659, 869, 889, 1109
MlyI GAGTC 2 cut(s) 127, 589
Mph1103I ATGCAT 3 cut(s) 334, 346, 1396
MseI TTAA 6 cut(s) 179, 662, 729, 780, 933, 1475
MslI CAYNNNNRTG 4 cut(s) 430, 981, 1234, 1389
MspA1I CMGCKG 2 cut(s) 323, 673
MspI CCGG 2 cut(s) 1255, 1442
MspR9I CCNGG 1 cut(s) 600
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 1 cut(s) 600
MvnI CGCG 2 cut(s) 777, 1296
MwoI GCNNNNNNNGC 4 cut(s) 241, 329, 1267, 1400
NdeI CATATG 3 cut(s) 292, 346, 1096
NdeII GATC 7 cut(s) 45, 382, 768, 838, 1070, 1196, 1432
NlaIII CATG 5 cut(s) 46, 133, 332, 1208, 1394
NlaIV GGNNCC 2 cut(s) 494, 991
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 1271
NsiI ATGCAT 3 cut(s) 334, 346, 1396
NspI RCATGY 1 cut(s) 332
PagI TCATGA 1 cut(s) 42
PctI GAATGC 1 cut(s) 976
PfeI GAWTC 5 cut(s) 110, 311, 629, 881, 911
PfoI TCCNGGA 1 cut(s) 598
PinAI ACCGGT 1 cut(s) 1441
PkrI GCNGC 4 cut(s) 19, 322, 325, 1241
PleI GAGTC 2 cut(s) 127, 589
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
PpsI GAGTC 2 cut(s) 127, 589
Ppu21I YACGTR 1 cut(s) 374
PsiI TTATAA 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 598
PspCI CACGTG 1 cut(s) 374
PspEI GGTNACC 1 cut(s) 1250
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 2 cut(s) 494, 991
PspPI GGNCC 1 cut(s) 492
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 2 cut(s) 768, 1070
PvuII CAGCTG 2 cut(s) 323, 673
RsaI GTAC 2 cut(s) 918, 1032
RsaNI GTAC 2 cut(s) 917, 1031
RseI CAYNNNNRTG 4 cut(s) 430, 981, 1234, 1389
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 6 cut(s) 179, 662, 729, 780, 933, 1475
SatI GCNGC 4 cut(s) 18, 321, 324, 1240
Sau3AI GATC 7 cut(s) 45, 382, 768, 838, 1070, 1196, 1432
Sau96I GGNCC 1 cut(s) 492
SchI GAGTC 2 cut(s) 127, 589
ScrFI CCNGG 1 cut(s) 600
SduI GDGCHC 3 cut(s) 9, 582, 1386
SfaNI GCATC 3 cut(s) 155, 181, 812
SfcI CTRYAG 2 cut(s) 18, 1074
SmiMI CAYNNNNRTG 4 cut(s) 430, 981, 1234, 1389
Sse9I AATT 7 cut(s) 195, 256, 305, 659, 869, 889, 1109
SspI AATATT 1 cut(s) 229
SspMI CTAG 3 cut(s) 396, 501, 1305
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 598
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 3 cut(s) 94, 121, 1285
TaiI ACGT 2 cut(s) 376, 1414
TaqI TCGA 7 cut(s) 50, 421, 451, 827, 1080, 1195, 1331
TasI AATT 7 cut(s) 195, 256, 305, 659, 869, 889, 1109
TatI WGTACW 1 cut(s) 1030
TfiI GAWTC 5 cut(s) 110, 311, 629, 881, 911
Tru1I TTAA 6 cut(s) 179, 662, 729, 780, 933, 1475
Tru9I TTAA 6 cut(s) 179, 662, 729, 780, 933, 1475
TscAI CASTG 4 cut(s) 357, 432, 841, 912
TseFI GTSAC 1 cut(s) 1271
TseI GCWGC 4 cut(s) 17, 320, 323, 1239
Tsp45I GTSAC 1 cut(s) 1271
TspDTI ATGAA 9 cut(s) 31, 300, 545, 642, 654, 690, 850, 1056, 1196
TspGWI ACGGA 1 cut(s) 630
TspRI CASTG 4 cut(s) 357, 432, 841, 912
XapI RAATTY 5 cut(s) 256, 305, 869, 889, 1109
XceI RCATGY 1 cut(s) 332
XspI CTAG 3 cut(s) 396, 501, 1305
Zsp2I ATGCAT 3 cut(s) 334, 346, 1396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.