Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Reverse (-)

21978810 .. 21980839

Gene Structure 2030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATGATGGGGATTCCTGTTGAGCTTGAGGTTACCACGGTTGAGAATCATAATGAAATGGGTGAAAGCTCTGGTCAAGCAATGATTGAGCAAGATGATGACAACCATAATGAACTCGGTGAAAATTCTGGTGAGCAAGATGAGAAGGTGGATCTTGATTCTATTCCTCTGGCTGTTGCAGATATGACAGAGGCTCAAGGAGATGAGCCTTACGTTGGCCAGGAGTTCGAATCTGAAGCAGCGGCTCATGGTTTTTATAATGCGTATGCTACTAAAGTAGGGTTCGTCATCCGTGTTAGTAAACTGTCACGGTCAAGGCATGATGGATCTCCCATAGGCAGGCAACTTGTTTGTAACAAGGAAGGTTACAGGTTGCCTAGCAAGCGGGATAAGGTTATTAGACAAAGAGCGGAAACAAGGGTTGGATGTAAAGCAATGATCTTGATTAGAAAAGAGAACTCTGGTAAATGGGTTATCACAAAGTTTGTCAAGGAGCACAATCACTCTTTGATGCCTGGCAGAGTTCGAAGGGGTTGCATTTATGATCAATATCCGAACGAACACGACAAAATTCAGGAACTGATGCAGCAGCTAGCAGCAGAGAAAAAGAGAGCGGCTACTTACAAAAGACATCTGGAGATGCTATTTGAACAGATCGAACAGCACAACGAAAGCCTTTCTAAGAGAATCCAACACATAGTAGACAATGTGAGGAATCTGGAACAGAGAGATCATCAACAGAACCACCAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

251

Amino Acids

28.86

Weight (kDa)

5.96

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	85 - 172	2.8e-33	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccBSI	CCGCTC	2 cut(s)	410, 614
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	4 cut(s)	242, 385, 410, 614
AclWI	GGATC	2 cut(s)	159, 334
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	124, 570
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	215, 339
AgsI	TTSAA	1 cut(s)	650
AjnI	CCWGG	2 cut(s)	219, 514
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	3 cut(s)	25, 69, 592
AluI	AGCT	3 cut(s)	25, 69, 592
Alw21I	GWGCWC	1 cut(s)	498
AlwI	GGATC	2 cut(s)	159, 334
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	4 cut(s)	239, 586, 589, 596
ApoI	RAATTY	2 cut(s)	124, 570
AsuHPI	GGTGA	3 cut(s)	74, 131, 143
AsuII	TTCGAA	2 cut(s)	228, 526
AsuNHI	GCTAGC	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	4 cut(s)	251, 598, 601, 608
BccI	CCATC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BciT130I	CCWGG	2 cut(s)	221, 516
BclI	TGATCA	1 cut(s)	544
BfaI	CTAG	2 cut(s)	378, 593
BisI	GCNGC	6 cut(s)	240, 243, 587, 590, 597, 615
BlsI	GCNGC	6 cut(s)	241, 244, 588, 591, 598, 616
Bme1390I	CCNGG	2 cut(s)	221, 516
BmrFI	CCNGG	2 cut(s)	221, 516
BmsI	GCATC	3 cut(s)	501, 573, 630
BmtI	GCTAGC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	656
Bpu14I	TTCGAA	2 cut(s)	228, 526
BpuEI	CTTGAG	2 cut(s)	47, 180
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 339
Bse3DI	GCAATG	2 cut(s)	87, 441
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	221, 516
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	288, 431
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	215, 339
BseMI	GCAATG	2 cut(s)	87, 441
BseXI	GCAGC	4 cut(s)	251, 598, 601, 608
BshFI	GGCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	215, 339
BsnI	GGCC	1 cut(s)	219
Bsp119I	TTCGAA	2 cut(s)	228, 526
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	6 cut(s)	151, 326, 438, 544, 654, 730
BspACI	CCGC	4 cut(s)	242, 385, 410, 614
BspANI	GGCC	1 cut(s)	219
BspOI	GCTAGC	1 cut(s)	596
BspPI	GGATC	2 cut(s)	159, 334
BspT104I	TTCGAA	2 cut(s)	228, 526
BsrBI	CCGCTC	2 cut(s)	410, 614
BsrDI	GCAATG	2 cut(s)	87, 441
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	6 cut(s)	151, 326, 438, 544, 654, 730
Bst2UI	CCWGG	2 cut(s)	221, 516
Bst4CI	ACNGT	3 cut(s)	40, 306, 312
BstBI	TTCGAA	2 cut(s)	228, 526
BstC8I	GCNNGC	3 cut(s)	341, 383, 594
BstDEI	CTNAG	1 cut(s)	681
BstDSI	CCRYGG	1 cut(s)	36
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	288, 431
BstKTI	GATC	6 cut(s)	154, 329, 441, 547, 657, 733
BstMBI	GATC	6 cut(s)	151, 326, 438, 544, 654, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	2 cut(s)	221, 516
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	219, 514
BstV1I	GCAGC	4 cut(s)	251, 598, 601, 608
BstX2I	RGATCY	2 cut(s)	151, 326
BstYI	RGATCY	2 cut(s)	151, 326
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	288, 431
Cac8I	GCNNGC	3 cut(s)	341, 383, 594
CaiI	CAGNNNCTG	1 cut(s)	580
CviAII	CATG	2 cut(s)	248, 320
DdeI	CTNAG	1 cut(s)	681
DpnI	GATC	6 cut(s)	153, 328, 440, 546, 656, 732
DpnII	GATC	6 cut(s)	151, 326, 438, 544, 654, 730
EaeI	YGGCCR	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	255
Eco91I	GGTNACC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	219, 514
FaeI	CATG	2 cut(s)	251, 323
FatI	CATG	2 cut(s)	247, 319
FauI	CCCGC	1 cut(s)	378
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	6 cut(s)	240, 243, 587, 590, 597, 615
FokI	GGATG	2 cut(s)	275, 438
Fsp4HI	GCNGC	6 cut(s)	240, 243, 587, 590, 597, 615
FspBI	CTAG	2 cut(s)	378, 593
GluI	GCNGC	6 cut(s)	240, 243, 587, 590, 597, 615
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	251, 323
HinfI	GANTC	6 cut(s)	13, 46, 158, 230, 687, 715
HphI	GGTGA	3 cut(s)	74, 131, 143
Hpy166II	GTNNAC	2 cut(s)	302, 703
Hpy188I	TCNGA	2 cut(s)	235, 555
Hpy188III	TCNNGA	5 cut(s)	155, 442, 575, 635, 719
Hpy8I	GTNNAC	2 cut(s)	302, 703
HpyAV	CCTTC	3 cut(s)	139, 356, 522
HpyCH4III	ACNGT	3 cut(s)	40, 306, 312
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	179, 537, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	1 cut(s)	681
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	251, 323
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	6 cut(s)	151, 326, 438, 544, 654, 730
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	4 cut(s)	251, 598, 601, 608
LweI	GCATC	3 cut(s)	501, 573, 630
MaeI	CTAG	2 cut(s)	378, 593
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	4 cut(s)	31, 306, 353, 365
MalI	GATC	6 cut(s)	153, 328, 440, 546, 656, 732
MbiI	CCGCTC	2 cut(s)	410, 614
MboI	GATC	6 cut(s)	151, 326, 438, 544, 654, 730
MflI	RGATCY	2 cut(s)	151, 326
MhlI	GDGCHC	1 cut(s)	498
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	2 cut(s)	124, 570
MluNI	TGGCCA	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	403, 715
MnlI	CCTC	4 cut(s)	22, 177, 184, 705
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	221, 516
MvaI	CCWGG	2 cut(s)	221, 516
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeII	GATC	6 cut(s)	151, 326, 438, 544, 654, 730
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	2 cut(s)	251, 323
NmuCI	GTSAC	1 cut(s)	306
NspV	TTCGAA	2 cut(s)	228, 526
PfeI	GAWTC	6 cut(s)	13, 46, 158, 230, 687, 715
PkrI	GCNGC	6 cut(s)	241, 244, 588, 591, 598, 616
PsiI	TTATAA	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	219, 514
PspEI	GGTNACC	1 cut(s)	31
PspGI	CCWGG	2 cut(s)	219, 514
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	151, 326
SatI	GCNGC	6 cut(s)	240, 243, 587, 590, 597, 615
Sau3AI	GATC	6 cut(s)	151, 326, 438, 544, 654, 730
ScrFI	CCNGG	2 cut(s)	221, 516
SduI	GDGCHC	1 cut(s)	498
SetI	ASST	9 cut(s)	27, 33, 71, 150, 216, 367, 374, 396, 594
SfaNI	GCATC	3 cut(s)	501, 573, 630
SfuI	TTCGAA	2 cut(s)	228, 526
SmlI	CTYRAG	2 cut(s)	26, 195
SmoI	CTYRAG	2 cut(s)	26, 195
Sse9I	AATT	2 cut(s)	124, 570
SsiI	CCGC	4 cut(s)	242, 385, 410, 614
SspMI	CTAG	2 cut(s)	378, 593
StyD4I	CCNGG	2 cut(s)	219, 514
TaaI	ACNGT	3 cut(s)	40, 306, 312
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	3 cut(s)	228, 526, 657
TasI	AATT	2 cut(s)	124, 570
TauI	GCSGC	2 cut(s)	245, 617
TfiI	GAWTC	6 cut(s)	13, 46, 158, 230, 687, 715
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	4 cut(s)	239, 586, 589, 596
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	2 cut(s)	69, 126
TspGWI	ACGGA	1 cut(s)	281
XapI	RAATTY	2 cut(s)	124, 570
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	2 cut(s)	378, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.