Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Reverse (-)

32903387 .. 32905204

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1262700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGACTCATGAATCTGATGGTGCATCGGTAGGAACTTCTCTTGTAGATATGAGTCATCTTTTTGGACAGGATGATGATGATGATGATGATGATCAAAGGACTCCAAGTTCTTGTAAAGATGGATCAAGTCTAGTCCAACCACATGAGCCGTATGTGGGTCAGGAATTCGACTCACAAGAAAGTGCACTGGCATTTTATAATGCCTATGCCACTCGTATGGGTTTTGTTACTCGTATGAACGATATGTATCGATCCAAACACGATGGAACCGTCATTGGGCGGACATTGGTATGCAACAAAGAGGGTTTCCGAAAGCCTGACAGGCGTGACAAGAAGACCCTAAAGCCTCGGGCTCAAACTAGGGTAGGTTGTAGGGCAATGCTGTCCATCAAGAAACTCAGTGTTGGGAAATGGGTTGTTACATGGTTCGTTAGGGAGCACACTCATGCATTGACTCCCAACAAAGCTCTAAAAGGACTGATCAATGATCAAGTACCGGACGATAAGACAAAGATTGCAGAGTTAACTAACGAGCTCTTCCTCGAGAGAAAGCGGTCTGCTGCACTTAGAGAAATAGTTGATCTTCTATTTAATCACATTGAGGAACATACGCAAGACCTGTCGAAGAAAGTTCAGCATGTTGTCGAAAATGTCAAGGAGCTTGAATCGGAAGGGAAAAACCGTCGTAGCCTCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

233

Amino Acids

26.36

Weight (kDa)

6.76

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	65 - 152	5.8e-30	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AciI	CCGC	2 cut(s)	280, 553
AclWI	GGATC	2 cut(s)	130, 246
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	2 cut(s)	155, 276
AgsI	TTSAA	1 cut(s)	665
AloI	GAACNNNNNNTCC	2 cut(s)	91, 123
AluBI	AGCT	3 cut(s)	467, 535, 661
AluI	AGCT	3 cut(s)	467, 535, 661
Alw21I	GWGCWC	3 cut(s)	187, 441, 537
Alw44I	GTGCAC	1 cut(s)	183
AlwI	GGATC	2 cut(s)	130, 246
Ama87I	CYCGRG	2 cut(s)	348, 542
ApaLI	GTGCAC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	1 cut(s)	164
AvaI	CYCGRG	2 cut(s)	348, 542
BaeGI	GKGCMC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	355, 537
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	3 cut(s)	187, 441, 537
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	4 cut(s)	11, 113, 257, 395
BceAI	ACGGC	1 cut(s)	133
BclI	TGATCA	3 cut(s)	91, 480, 487
BfaI	CTAG	2 cut(s)	131, 360
BglI	GCCNNNNNGGC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
BmeT110I	CYCGRG	2 cut(s)	348, 542
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	341
Bsa29I	ATCGAT	1 cut(s)	250
BsaBI	GATNNNNATC	2 cut(s)	90, 246
BsaJI	CCNNGG	2 cut(s)	347, 691
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 276
Bse1I	ACTGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	384
Bse8I	GATNNNNATC	2 cut(s)	90, 246
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	347, 691
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	2 cut(s)	90, 246
BseLI	CCNNNNNNNGG	2 cut(s)	155, 276
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	412
BseNI	ACTGG	1 cut(s)	192
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	547
BsgI	GTGCAG	1 cut(s)	546
BshVI	ATCGAT	1 cut(s)	250
BsiHKAI	GWGCWC	3 cut(s)	187, 441, 537
BsiHKCI	CYCGRG	2 cut(s)	348, 542
BsiSI	CCGG	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	155, 276
BsoBI	CYCGRG	2 cut(s)	348, 542
Bsp1286I	GDGCHC	4 cut(s)	187, 355, 441, 537
Bsp143I	GATC	6 cut(s)	91, 122, 251, 480, 487, 580
BspACI	CCGC	2 cut(s)	280, 553
BspCNI	CTCAG	1 cut(s)	411
BspDI	ATCGAT	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	130, 246
BspQI	GCTCTTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	347, 691
BssMI	GATC	6 cut(s)	91, 122, 251, 480, 487, 580
Bst4CI	ACNGT	2 cut(s)	271, 683
Bst6I	CTCTTC	1 cut(s)	542
BstDEI	CTNAG	2 cut(s)	398, 566
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	6 cut(s)	94, 125, 254, 483, 490, 583
BstMBI	GATC	6 cut(s)	91, 122, 251, 480, 487, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	641
BstSLI	GKGCMC	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	341
BstXI	CCANNNNNNTGG	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	250
BsuTUI	ATCGAT	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	185, 406
CciI	TCATGA	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	5 cut(s)	8, 143, 423, 446, 638
CviJI	RGCY	8 cut(s)	148, 316, 346, 353, 467, 535, 661, 690
CviKI_1	RGCY	8 cut(s)	148, 316, 346, 353, 467, 535, 661, 690
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	2 cut(s)	398, 566
DpnI	GATC	6 cut(s)	93, 124, 253, 482, 489, 582
DpnII	GATC	6 cut(s)	91, 122, 251, 480, 487, 580
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
EciI	GGCGGA	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	535
Eco24I	GRGCYC	2 cut(s)	355, 537
Eco53kI	GAGCTC	1 cut(s)	535
Eco88I	CYCGRG	2 cut(s)	348, 542
EcoICRI	GAGCTC	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	2 cut(s)	355, 537
FaeI	CATG	5 cut(s)	11, 146, 426, 449, 641
FatI	CATG	5 cut(s)	7, 142, 422, 445, 637
FbaI	TGATCA	3 cut(s)	91, 480, 487
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	2 cut(s)	355, 537
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	2 cut(s)	131, 360
GluI	GCNGC	1 cut(s)	561
HapII	CCGG	1 cut(s)	497
Hin1II	CATG	5 cut(s)	11, 146, 426, 449, 641
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HinfI	GANTC	7 cut(s)	4, 11, 52, 100, 170, 454, 665
HpaI	GTTAAC	1 cut(s)	525
HpaII	CCGG	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	185, 525
Hpy188I	TCNGA	4 cut(s)	16, 311, 670, 695
Hpy188III	TCNNGA	4 cut(s)	8, 161, 391, 544
Hpy8I	GTNNAC	2 cut(s)	185, 525
Hpy99I	CGWCG	1 cut(s)	687
HpyAV	CCTTC	1 cut(s)	665
HpyCH4III	ACNGT	2 cut(s)	271, 683
HpyCH4V	TGCA	6 cut(s)	23, 185, 294, 449, 518, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	2 cut(s)	398, 566
Hsp92II	CATG	5 cut(s)	11, 146, 426, 449, 641
Ksp22I	TGATCA	3 cut(s)	91, 480, 487
KspAI	GTTAAC	1 cut(s)	525
Kzo9I	GATC	6 cut(s)	91, 122, 251, 480, 487, 580
LguI	GCTCTTC	1 cut(s)	542
LmnI	GCTCC	2 cut(s)	436, 658
LpnPI	CCDG	7 cut(s)	53, 146, 173, 307, 330, 510, 632
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	2 cut(s)	131, 360
MaeIII	GTNAC	3 cut(s)	226, 326, 418
MalI	GATC	6 cut(s)	93, 124, 253, 482, 489, 582
MboI	GATC	6 cut(s)	91, 122, 251, 480, 487, 580
MboII	GAAGA	4 cut(s)	346, 529, 575, 637
MhlI	GDGCHC	4 cut(s)	187, 355, 441, 537
MluCI	AATT	1 cut(s)	164
MlyI	GAGTC	4 cut(s)	61, 94, 164, 448
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	295, 357, 551, 595
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	2 cut(s)	524, 591
MslI	CAYNNNNRTG	3 cut(s)	215, 289, 444
MspI	CCGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	6 cut(s)	91, 122, 251, 480, 487, 580
NlaIII	CATG	5 cut(s)	11, 146, 426, 449, 641
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	641
PaeR7I	CTCGAG	1 cut(s)	542
PagI	TCATGA	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	11, 665
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	4 cut(s)	60, 94, 164, 448
PpsI	GAGTC	4 cut(s)	60, 94, 164, 448
PsiI	TTATAA	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	3 cut(s)	215, 289, 444
SacI	GAGCTC	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	524, 591
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	6 cut(s)	91, 122, 251, 480, 487, 580
SchI	GAGTC	4 cut(s)	61, 94, 164, 448
SduI	GDGCHC	4 cut(s)	187, 355, 441, 537
SetI	ASST	5 cut(s)	370, 469, 537, 621, 663
SfaNI	GCATC	1 cut(s)	32
Sfr274I	CTCGAG	1 cut(s)	542
SlaI	CTCGAG	1 cut(s)	542
SmiMI	CAYNNNNRTG	3 cut(s)	215, 289, 444
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	280, 553
SspMI	CTAG	2 cut(s)	131, 360
SstI	GAGCTC	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	271, 683
TaqI	TCGA	5 cut(s)	168, 250, 543, 623, 645
TasI	AATT	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	11, 665
Tru1I	TTAA	2 cut(s)	524, 591
Tru9I	TTAA	2 cut(s)	524, 591
TscAI	CASTG	2 cut(s)	192, 406
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	24, 251
TspRI	CASTG	2 cut(s)	192, 406
VneI	GTGCAC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	542
XspI	CTAG	2 cut(s)	131, 360
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.