Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Forward (+)

36666816 .. 36672059

Gene Structure 5244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1272500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAACTTAGTAGAGCAGGTGATGAAAATGAAACAGGTGGTAGTTCTGTTGAAGGGGCATTCCAACTGGGTCTGGATGATAAAATAAATCTAGATTCTCCTCGAGGGGATATAATTCCAGAAGCAGTTCCTGTAGTATCGGTAGTGCCAGCAGATGAGCCATATGTGGGTCAAGAGTTTGAAACAGAAGCAGCTGCTCATGCATTTTATAATGCATATGCCACACGTGTGGGATTCATAATTCGTGTAAGCAAACTCTCTCGATCAAGGCGTGATGGATCTGCCATTGGTCGTGCACTTGTTTGTAATAAAGAGGGTTATAGAATGCCTGACAAACGTGAAAAAGTTGTAAGGCAAAGAGCCGAGACCAGGGTTGGTTGTAGAGCAATGATTTTGGTGAGGAAAGTAAGTTCTGGGAAATGGGTTGTCACAAAATTTGTAAAGGAGCACACTCATCCTTTGACACCTGGAAAAGGTCGAAGGGATTGCATTTATGATCAATATCCGAATGAGCATGACAAGATTCGGGAATTATCTCAGCAGTTGGCCATAGAGAAAAAACGTGCTGCGACATATAAAAGACATCTCGACCTAATATTTGAGCACATTGAAGAACACAATGAGAGCCTATCAAAAAAGATCCAACACATAGTAGAGAGTGTGAAGGAGATCGAAGGCAAAGAACAGCAAGGATACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

234

Amino Acids

26.42

Weight (kDa)

8.65

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	69 - 155	1.6e-30	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
AarI	CACCTGC	1 cut(s)	8
AbsI	CCTCGAGG	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	286, 634
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	434
AcvI	CACGTG	1 cut(s)	227
AfiI	CCNNNNNNNGG	3 cut(s)	167, 369, 473
AflIII	ACRYGT	2 cut(s)	224, 226
AgsI	TTSAA	3 cut(s)	53, 182, 611
AjnI	CCWGG	2 cut(s)	368, 466
AleI	CACNNNNGTG	1 cut(s)	227
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw21I	GWGCWC	3 cut(s)	298, 450, 606
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	286, 634
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	102
AoxI	GGCC	1 cut(s)	546
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	191, 194, 566
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
Asp700I	GAANNNNTTC	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	32, 409
AvaI	CYCGRG	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	548
BbrPI	CACGTG	1 cut(s)	227
Bbv12I	GWGCWC	3 cut(s)	298, 450, 606
BbvI	GCAGC	3 cut(s)	181, 203, 553
BccI	CCATC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	2 cut(s)	370, 468
BciVI	GTATCC	1 cut(s)	686
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	686
BisI	GCNGC	3 cut(s)	192, 195, 567
BlsI	GCNGC	3 cut(s)	193, 196, 568
Bme1390I	CCNGG	2 cut(s)	370, 468
BmeT110I	CYCGRG	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	370, 468
BmrI	ACTGGG	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 369, 473
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	370, 468
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	82, 454
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	3 cut(s)	167, 369, 473
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	181, 203, 553
BshFI	GGCC	1 cut(s)	548
BsiHKAI	GWGCWC	3 cut(s)	298, 450, 606
BsiHKCI	CYCGRG	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	167, 369, 473
BsmAI	GTCTC	1 cut(s)	359
BsmI	GAATGC	2 cut(s)	59, 330
BsnI	GGCC	1 cut(s)	548
Bso31I	GGTCTC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	102
Bsp1286I	GDGCHC	3 cut(s)	298, 450, 606
Bsp143I	GATC	5 cut(s)	263, 278, 496, 639, 669
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	286, 634
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	5 cut(s)	263, 278, 496, 639, 669
Bst2UI	CCWGG	2 cut(s)	370, 468
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	8, 537
BstENI	CCTNNNNNAGG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	82, 454
BstKTI	GATC	5 cut(s)	266, 281, 499, 642, 672
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	5 cut(s)	263, 278, 496, 639, 669
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	2 cut(s)	370, 468
BstSCI	CCNGG	2 cut(s)	368, 466
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	181, 203, 553
BstX2I	RGATCY	2 cut(s)	278, 639
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	2 cut(s)	278, 639
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	82, 454
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	131
CviAII	CATG	2 cut(s)	200, 515
CviJI	RGCY	5 cut(s)	160, 194, 362, 548, 627
CviKI_1	RGCY	5 cut(s)	160, 194, 362, 548, 627
DdeI	CTNAG	2 cut(s)	8, 537
DpnI	GATC	5 cut(s)	265, 280, 498, 641, 671
DpnII	GATC	5 cut(s)	263, 278, 496, 639, 669
EaeI	YGGCCR	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	359
Eco72I	CACGTG	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	368, 466
EcoT22I	ATGCAT	2 cut(s)	205, 217
FaeI	CATG	2 cut(s)	203, 518
FatI	CATG	2 cut(s)	199, 514
FauNDI	CATATG	2 cut(s)	163, 217
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	192, 195, 567
FokI	GGATG	2 cut(s)	89, 441
Fsp4HI	GCNGC	3 cut(s)	192, 195, 567
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	3 cut(s)	192, 195, 567
HaeIII	GGCC	1 cut(s)	548
Hin1II	CATG	2 cut(s)	203, 518
HinfI	GANTC	3 cut(s)	95, 234, 523
HphI	GGTGA	2 cut(s)	32, 409
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	7 cut(s)	74, 92, 119, 173, 261, 527, 587
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	4 cut(s)	47, 474, 658, 668
HpyCH4IV	ACGT	3 cut(s)	226, 337, 562
HpyCH4V	TGCA	4 cut(s)	203, 215, 296, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	8, 537
HpySE526I	ACGT	3 cut(s)	226, 337, 562
Hsp92II	CATG	2 cut(s)	203, 518
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	263, 278, 496, 639, 669
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	3 cut(s)	181, 203, 553
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	3 cut(s)	226, 337, 562
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	5 cut(s)	265, 280, 498, 641, 671
MboI	GATC	5 cut(s)	263, 278, 496, 639, 669
MboII	GAAGA	1 cut(s)	623
MflI	RGATCY	2 cut(s)	278, 639
MhlI	GDGCHC	3 cut(s)	298, 450, 606
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	4 cut(s)	114, 240, 434, 530
MluNI	TGGCCA	1 cut(s)	548
MmeI	TCCRAC	2 cut(s)	88, 667
MnlI	CCTC	4 cut(s)	98, 111, 307, 393
Mox20I	TGGCCA	1 cut(s)	548
Mph1103I	ATGCAT	2 cut(s)	205, 217
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	548
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	370, 468
Mva1269I	GAATGC	2 cut(s)	59, 330
MvaI	CCWGG	2 cut(s)	370, 468
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeI	CATATG	2 cut(s)	163, 217
NdeII	GATC	5 cut(s)	263, 278, 496, 639, 669
NlaIII	CATG	2 cut(s)	203, 518
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	427
NsiI	ATGCAT	2 cut(s)	205, 217
OliI	CACNNNNGTG	1 cut(s)	227
PaeR7I	CTCGAG	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PctI	GAATGC	2 cut(s)	59, 330
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	3 cut(s)	95, 234, 523
PkrI	GCNGC	3 cut(s)	193, 196, 568
PmaCI	CACGTG	1 cut(s)	227
PmlI	CACGTG	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	368, 466
PspCI	CACGTG	1 cut(s)	227
PspGI	CCWGG	2 cut(s)	368, 466
PspXI	VCTCGAGB	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	278, 639
PvuII	CAGCTG	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	227
SatI	GCNGC	3 cut(s)	192, 195, 567
Sau3AI	GATC	5 cut(s)	263, 278, 496, 639, 669
ScrFI	CCNGG	2 cut(s)	370, 468
SduI	GDGCHC	3 cut(s)	298, 450, 606
SetI	ASST	9 cut(s)	22, 40, 196, 229, 340, 469, 478, 565, 594
SfcI	CTRYAG	1 cut(s)	132
Sfr274I	CTCGAG	1 cut(s)	102
SlaI	CTCGAG	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
Sse9I	AATT	4 cut(s)	114, 240, 434, 530
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	368, 466
TaiI	ACGT	3 cut(s)	229, 340, 565
TaqI	TCGA	5 cut(s)	103, 262, 478, 588, 672
TasI	AATT	4 cut(s)	114, 240, 434, 530
TfiI	GAWTC	3 cut(s)	95, 234, 523
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	3 cut(s)	191, 194, 566
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	3 cut(s)	39, 45, 226
VneI	GTGCAC	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	471
XapI	RAATTY	1 cut(s)	434
XbaI	TCTAGA	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	92
Zsp2I	ATGCAT	2 cut(s)	205, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.