Rroxscaffold_6G00425730

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001037
Physical Location & Seq
Reverse (-)
46743412 .. 46745831
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425730.1

Sequence Viewer

Length: 738 bp
ATGGATTCGGTACTTGATATAAATGTTAATGAGGAGGTGTCAAATGGTTCAACTGATACCGAGTTCAAGCATTCTAATGATGGTGCCTTGGTAGGCACTTCTCTTCAGAAGATACTTTGGGTTGTACAAAATGATGAAAGAACTCAAAACTCTTCTAAAGATGGATCTGTAGTCGAAGTAGATGAGCCATATGTGGGTCAGGAATTTGATACAGAAGTAAATGCACAGGCATTTTATAATGTCTATGGCTTGCGTATGGGTTTCAATACTCGTATGAACTATCTGTCTCGATCCAAACATGATGGAACTATCATTGCACGAACATTTGTATGCAGCAAAGAGGGTTACCGGAAGCCTGATAGGCGTGACAAGAAGACTGTAAACCCACGGGCTCCCACTAGGGTAGGTTGTATGGCAATGCTGTCGATAAAAAAACTGAATATTGACAAGTGGGTTGTTACTAAGTTTATCAAGGAGCACAATCATGCATTGATAGCGAGCAAACGTCCAAAAGGGTTGATTGAGGATCAAATACCGGATGATAAGACAAAGATTGAAGAATTAACTCGGGAGCTGTTCCTTGAGAGAGAGCGTTCTGCTTCACTAAGAAAAGTCATAGACCTTCTATTTGAACACATAGAGGAACATACACAAGACCTGTCGAAGAAAGTCCAGTATGTTGTGGATAAGGTAAAGGAGATTGAATCTGAAGGGACAAACCGCCATAAGCTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

245

Amino Acids

28.21

Weight (kDa)

7.07

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 78 - 165 1.8e-29 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 83
AciI CCGC 1 cut(s) 721
AclWI GGATC 3 cut(s) 172, 285, 534
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 2 cut(s) 89, 729
AfaI GTAC 2 cut(s) 12, 126
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 6 cut(s) 51, 67, 265, 557, 632, 704
AluBI AGCT 2 cut(s) 574, 730
AluI AGCT 2 cut(s) 574, 730
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 3 cut(s) 172, 285, 534
Ama87I CYCGRG 1 cut(s) 567
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 1 cut(s) 203
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
AvaI CYCGRG 1 cut(s) 567
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 345
BccI CCATC 3 cut(s) 74, 155, 296
BcgI CGANNNNNNTGC 2 cut(s) 405, 439
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 361
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 567
BmiI GGNNCC 2 cut(s) 85, 393
BpiI GAAGAC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 87, 386
BsaWI WCCGGW 2 cut(s) 348, 535
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 673
Bse3DI GCAATG 2 cut(s) 312, 423
BseDI CCNNGG 2 cut(s) 87, 386
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 2 cut(s) 312, 423
BseNI ACTGG 1 cut(s) 673
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 480
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 2 cut(s) 349, 536
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 727
BsmI GAATGC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 394, 480
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 3 cut(s) 164, 290, 526
BspACI CCGC 1 cut(s) 721
BspLI GGNNCC 2 cut(s) 85, 393
BspPI GGATC 3 cut(s) 172, 285, 534
BspT107I GGYRCC 1 cut(s) 83
BsrDI GCAATG 2 cut(s) 312, 423
BsrGI TGTACA 1 cut(s) 124
BsrI ACTGG 1 cut(s) 673
BssECI CCNNGG 2 cut(s) 87, 386
BssMI GATC 3 cut(s) 164, 290, 526
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 2 cut(s) 108, 157
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 251, 499
BstDEI CTNAG 3 cut(s) 462, 605, 731
BstDSI CCRYGG 1 cut(s) 386
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 3 cut(s) 167, 293, 529
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 3 cut(s) 164, 290, 526
BstMWI GCNNNNNNNGC 2 cut(s) 361, 494
BstPI GGTNACC 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 386
BtsCI GGATG 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 251, 499
Csp6I GTAC 2 cut(s) 11, 125
CviAII CATG 2 cut(s) 299, 485
CviJI RGCY 6 cut(s) 187, 249, 355, 392, 574, 730
CviKI_1 RGCY 6 cut(s) 187, 249, 355, 392, 574, 730
CviQI GTAC 2 cut(s) 11, 125
DdeI CTNAG 3 cut(s) 462, 605, 731
DpnI GATC 3 cut(s) 166, 292, 528
DpnII GATC 3 cut(s) 164, 290, 526
Eam1104I CTCTTC 2 cut(s) 108, 157
EarI CTCTTC 2 cut(s) 108, 157
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 394
Eco57I CTGAAG 2 cut(s) 89, 729
Eco88I CYCGRG 1 cut(s) 567
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 302, 488
FaqI GGGAC 1 cut(s) 727
FatI CATG 2 cut(s) 298, 484
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 1 cut(s) 551
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 1 cut(s) 399
GluI GCNGC 1 cut(s) 334
HapII CCGG 2 cut(s) 349, 536
Hin1II CATG 2 cut(s) 302, 488
HinfI GANTC 2 cut(s) 5, 704
HpaII CCGG 2 cut(s) 349, 536
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 3 cut(s) 108, 709, 734
Hpy188III TCNNGA 3 cut(s) 200, 288, 569
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 2 cut(s) 632, 704
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 4 cut(s) 224, 317, 333, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 494
HpyF3I CTNAG 3 cut(s) 462, 605, 731
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 2 cut(s) 302, 488
Kzo9I GATC 3 cut(s) 164, 290, 526
LmnI GCTCC 3 cut(s) 397, 475, 571
LpnPI CCDG 7 cut(s) 185, 212, 362, 369, 549, 671, 686
Lsp1109I GCAGC 1 cut(s) 345
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 344, 365, 457
MalI GATC 3 cut(s) 166, 292, 528
MboI GATC 3 cut(s) 164, 290, 526
MboII GAAGA 6 cut(s) 95, 121, 144, 385, 569, 676
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 2 cut(s) 394, 480
MluCI AATT 2 cut(s) 203, 560
MnlI CCTC 5 cut(s) 25, 28, 334, 517, 634
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 2 cut(s) 27, 563
MslI CAYNNNNRTG 3 cut(s) 75, 328, 483
MspI CCGG 2 cut(s) 349, 536
Mva1269I GAATGC 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 361, 494
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 164, 290, 526
NlaIII CATG 2 cut(s) 302, 488
NlaIV GGNNCC 2 cut(s) 85, 393
NmuCI GTSAC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 490
PctI GAATGC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 5, 704
PkrI GCNGC 1 cut(s) 335
PsiI TTATAA 1 cut(s) 237
PspEI GGTNACC 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 85, 393
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 2 cut(s) 12, 126
RsaNI GTAC 2 cut(s) 11, 125
RseI CAYNNNNRTG 3 cut(s) 75, 328, 483
SaqAI TTAA 2 cut(s) 27, 563
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 3 cut(s) 164, 290, 526
SduI GDGCHC 2 cut(s) 394, 480
SetI ASST 8 cut(s) 39, 409, 508, 576, 624, 660, 693, 732
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 3 cut(s) 75, 328, 483
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 2 cut(s) 203, 560
SsiI CCGC 1 cut(s) 721
SspI AATATT 1 cut(s) 442
SspMI CTAG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 508
TaqI TCGA 4 cut(s) 174, 289, 425, 662
TasI AATT 2 cut(s) 203, 560
TatI WGTACW 1 cut(s) 124
TfiI GAWTC 2 cut(s) 5, 704
Tru1I TTAA 2 cut(s) 27, 563
Tru9I TTAA 2 cut(s) 27, 563
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 150, 290
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 399
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.