Rw3G000160

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001037
Physical Location & Seq
Reverse (-)
241214 .. 243655
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000160.1

Sequence Viewer

Length: 738 bp
ATGGATTCGGTACTTGATATAAATGTTAATGAGGAGGTGTCAACTGGTTCAACTGATACCGAGTTCAAGCATTCTAATGATGGTGCCTTGGTAGGCACTTCTCTTCAGAAGATACTTTGGGTTGTACAAAATGATGAAAGAACTCAAAACTCTTCTAAAGATGGATCTGTAGTCGAGGTAGATGAGCCATATGTGGGTCAGGAATTTGATACAGAAGTAAATGCACAGGCATTTTATAATGTCTATGGCTTGCGTATGGGTTTCAATACTCGTATGAACTATCTGTCTCGATCCAAACATGATGGAACTATCATTGCACGAACATTTGTATGCAGCAAAGAGGGTTACCGGAAGCCTGATAGGCGTGACAAGAAGACTGTAAACCCACGCGCTCCCACTAGGGTAGGTTGTATGGCAATGCTGTCGATAAAAAAACTGAATATCGGCAAGTGGGTTGTTACTAAGTTTATCAAGGAGCACAATCATGCATTGATAGCGAGCAAACGTCCAAAAGGGTTGATTGAGGATCAAATACCGGATGATAAGACAAAGATTGAAGAATTAACTGGAGAGCTGTTCCTTGAGAGAGAGCGTTCTGCTTCACTAAGAAAAGTCATAGACCTTCTATTTGAACACATCGAGGAACATACACAAGACCTGTCGAAGAAAGTCCAGTATGTTGTGGATAAGGTAAAGGAGATTGAATCAGAAGGGACAGACCGCCATAAGCTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

245

Amino Acids

28.04

Weight (kDa)

6.68

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 78 - 165 7.6e-30 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 83
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 721
AclWI GGATC 3 cut(s) 172, 285, 534
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 2 cut(s) 12, 126
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 6 cut(s) 51, 67, 265, 557, 632, 704
AluBI AGCT 2 cut(s) 574, 730
AluI AGCT 2 cut(s) 574, 730
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 3 cut(s) 172, 285, 534
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 1 cut(s) 203
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
AspLEI GCGC 1 cut(s) 392
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BanI GGYRCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 345
BccI CCATC 3 cut(s) 74, 155, 296
BcgI CGANNNNNNTGC 2 cut(s) 405, 439
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 361
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 2 cut(s) 348, 535
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 3 cut(s) 49, 571, 673
Bse3DI GCAATG 2 cut(s) 312, 423
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 2 cut(s) 312, 423
BseNI ACTGG 3 cut(s) 49, 571, 673
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 2 cut(s) 349, 536
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 727
BsmI GAATGC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 480
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 3 cut(s) 164, 290, 526
BspACI CCGC 1 cut(s) 721
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 3 cut(s) 172, 285, 534
BspT107I GGYRCC 1 cut(s) 83
BsrDI GCAATG 2 cut(s) 312, 423
BsrGI TGTACA 1 cut(s) 124
BsrI ACTGG 3 cut(s) 49, 571, 673
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 164, 290, 526
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 2 cut(s) 108, 157
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 251, 499
BstDEI CTNAG 3 cut(s) 462, 605, 731
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 544
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 3 cut(s) 167, 293, 529
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 3 cut(s) 164, 290, 526
BstMWI GCNNNNNNNGC 2 cut(s) 361, 494
BstPI GGTNACC 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BtsCI GGATG 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 251, 499
CfoI GCGC 1 cut(s) 392
Csp6I GTAC 2 cut(s) 11, 125
CviAII CATG 2 cut(s) 299, 485
CviJI RGCY 5 cut(s) 187, 249, 355, 574, 730
CviKI_1 RGCY 5 cut(s) 187, 249, 355, 574, 730
CviQI GTAC 2 cut(s) 11, 125
DdeI CTNAG 3 cut(s) 462, 605, 731
DpnI GATC 3 cut(s) 166, 292, 528
DpnII GATC 3 cut(s) 164, 290, 526
Eam1104I CTCTTC 2 cut(s) 108, 157
EarI CTCTTC 2 cut(s) 108, 157
Eco130I CCWWGG 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 89
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 302, 488
FaqI GGGAC 1 cut(s) 727
FatI CATG 2 cut(s) 298, 484
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 588
HapII CCGG 2 cut(s) 349, 536
HhaI GCGC 1 cut(s) 392
Hin1II CATG 2 cut(s) 302, 488
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 5, 704
HpaII CCGG 2 cut(s) 349, 536
Hpy166II GTNNAC 2 cut(s) 42, 382
Hpy188I TCNGA 3 cut(s) 108, 709, 734
Hpy188III TCNNGA 2 cut(s) 200, 288
Hpy8I GTNNAC 2 cut(s) 42, 382
HpyAV CCTTC 2 cut(s) 632, 704
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 4 cut(s) 224, 317, 333, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 494
HpyF3I CTNAG 3 cut(s) 462, 605, 731
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 2 cut(s) 302, 488
HspAI GCGC 1 cut(s) 390
Kzo9I GATC 3 cut(s) 164, 290, 526
LmnI GCTCC 2 cut(s) 397, 475
LpnPI CCDG 9 cut(s) 30, 185, 212, 362, 369, 549, 552, 671, 686
Lsp1109I GCAGC 1 cut(s) 345
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 344, 365, 457
MalI GATC 3 cut(s) 166, 292, 528
MboI GATC 3 cut(s) 164, 290, 526
MboII GAAGA 6 cut(s) 95, 121, 144, 385, 569, 676
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 2 cut(s) 203, 560
MnlI CCTC 6 cut(s) 25, 28, 169, 334, 517, 634
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 2 cut(s) 27, 563
MslI CAYNNNNRTG 3 cut(s) 75, 328, 483
MspI CCGG 2 cut(s) 349, 536
Mva1269I GAATGC 1 cut(s) 70
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 361, 494
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 164, 290, 526
NlaIII CATG 2 cut(s) 302, 488
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 490
PctI GAATGC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 5, 704
PkrI GCNGC 1 cut(s) 335
PsiI TTATAA 1 cut(s) 237
PspEI GGTNACC 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 2 cut(s) 12, 126
RsaNI GTAC 2 cut(s) 11, 125
RseI CAYNNNNRTG 3 cut(s) 75, 328, 483
SaqAI TTAA 2 cut(s) 27, 563
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 3 cut(s) 164, 290, 526
SduI GDGCHC 1 cut(s) 480
SetI ASST 9 cut(s) 39, 180, 409, 508, 576, 624, 660, 693, 732
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 3 cut(s) 75, 328, 483
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 2 cut(s) 203, 560
SsiI CCGC 1 cut(s) 721
SspMI CTAG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 508
TaqI TCGA 5 cut(s) 174, 289, 425, 639, 662
TasI AATT 2 cut(s) 203, 560
TatI WGTACW 1 cut(s) 124
TfiI GAWTC 2 cut(s) 5, 704
Tru1I TTAA 2 cut(s) 27, 563
Tru9I TTAA 2 cut(s) 27, 563
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 150, 290
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 399
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.