Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Reverse (-)

18752291 .. 18755471

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G196400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAATTTTCGGTTGATGGTGATGTTAGTGGCGAGGTGGTAGGAAGTTCTGCTGAGCTAGAAATTAGTAGAGCAGGTGATGAAAATGAGACGGGTGGAAGTTCTATTGAAGGAGCATTCCAACTGGGTCAGGATGATAAAATGAATCAAGATTATCCTGGAAAGGATATAATTCCACAAGCAGTTCCAGTTGTATCAGTGGTTCCAGCAGATGAGCCATATGTGGGTCAAGAGTTTGAAACCGAAGCAGCTGCGCATGCATTTTATAATGCATATGCCACTCGTGTGGGATTCATAATTCGTGTAAGCAAACTCTCTCGATCACGGCGTGATGGATCTGCCATTGGTCGTGCACTTGTATGTAACAAAGAGGGTTATAGAATGCCTGACAAGCGCGAAAAAATTGTAAGGCAGAGAGCGGAGACCAGGGTCGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTAAGTTCTGGTAAATGGGTCGTTACAAAATTTGTAAAGGAGCACACTCATCCTTTGACACCTGGGAAAGGTCGAAGGGATTGCATTTATGATCAATATCCGAATGAACATGACAAGATTCGGGAACTATCTCAGCAGCTGGCCATAGAGAAAAAGCGTGCTGCTACCTATAAAAGACATCTCGACCTAATATTTGAGCACATTGAAGAGCACAATGAGAGTCTTTCAAAGAAGATCCAACACATAGTAGAGAGTGTGAAGGAGATCGAAGGCAAAGAACAGCAACAACACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

253

Amino Acids

28.45

Weight (kDa)

6.77

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AarI	CACCTGC	1 cut(s)	65
Acc16I	TGCGCA	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	419
AccII	CGCG	1 cut(s)	396
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	2 cut(s)	343, 691
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	2 cut(s)	5, 491
AdeI	CACNNNGTG	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	224, 530
AgsI	TTSAA	4 cut(s)	110, 239, 668, 690
AjnI	CCWGG	3 cut(s)	157, 425, 523
AleI	CACNNNNGTG	1 cut(s)	284
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	3 cut(s)	58, 251, 601
AluI	AGCT	3 cut(s)	58, 251, 601
Alw21I	GWGCWC	4 cut(s)	355, 507, 663, 675
Alw26I	GTCTC	2 cut(s)	83, 416
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	343, 691
AlwNI	CAGNNNCTG	1 cut(s)	601
AoxI	GGCC	1 cut(s)	603
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	4 cut(s)	248, 251, 598, 623
ApoI	RAATTY	2 cut(s)	5, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
AspLEI	GCGC	2 cut(s)	256, 396
AsuHPI	GGTGA	3 cut(s)	32, 89, 466
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	605
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	4 cut(s)	355, 507, 663, 675
BbvI	GCAGC	4 cut(s)	238, 260, 610, 610
BccI	CCATC	2 cut(s)	11, 326
BceAI	ACGGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	4 cut(s)	233, 267, 525, 559
BciT130I	CCWGG	3 cut(s)	159, 427, 525
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	83, 416
BfaI	CTAG	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	4 cut(s)	249, 252, 599, 624
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	4 cut(s)	250, 253, 600, 625
Bme1390I	CCNGG	3 cut(s)	159, 427, 525
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	3 cut(s)	159, 427, 525
BmrI	ACTGGG	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	134
BoxI	GACNNNNGTC	1 cut(s)	428
Bpu1102I	GCTNAGC	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	426, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 530
Bse1I	ACTGG	2 cut(s)	129, 188
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	3 cut(s)	159, 427, 525
BseDI	CCNNGG	2 cut(s)	426, 524
BseGI	GGATG	2 cut(s)	139, 511
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	224, 530
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	45, 608
BseNI	ACTGG	2 cut(s)	129, 188
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	4 cut(s)	238, 260, 610, 610
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	605
BsiHKAI	GWGCWC	4 cut(s)	355, 507, 663, 675
BslI	CCNNNNNNNGG	2 cut(s)	224, 530
BsmAI	GTCTC	2 cut(s)	83, 416
BsmBI	CGTCTC	1 cut(s)	83
BsmI	GAATGC	2 cut(s)	116, 387
BsnI	GGCC	1 cut(s)	605
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	4 cut(s)	355, 507, 663, 675
Bsp143I	GATC	5 cut(s)	320, 335, 553, 696, 726
Bsp1720I	GCTNAGC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	2 cut(s)	46, 607
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	65
BspPI	GGATC	2 cut(s)	343, 691
BspQI	GCTCTTC	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	129, 188
BssECI	CCNNGG	2 cut(s)	426, 524
BssMI	GATC	5 cut(s)	320, 335, 553, 696, 726
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	3 cut(s)	159, 427, 525
Bst6I	CTCTTC	1 cut(s)	663
BstC8I	GCNNGC	3 cut(s)	258, 603, 621
BstDEI	CTNAG	2 cut(s)	54, 594
BstENI	CCTNNNNNAGG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	139, 511
BstFNI	CGCG	1 cut(s)	396
BstHHI	GCGC	2 cut(s)	256, 396
BstKTI	GATC	5 cut(s)	323, 338, 556, 699, 729
BstMAI	GTCTC	2 cut(s)	83, 416
BstMBI	GATC	5 cut(s)	320, 335, 553, 696, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 391
BstNI	CCWGG	3 cut(s)	159, 427, 525
BstNSI	RCATGY	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	428
BstSCI	CCNGG	3 cut(s)	157, 425, 523
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	4 cut(s)	238, 260, 610, 610
BstX2I	RGATCY	2 cut(s)	335, 696
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	2 cut(s)	335, 696
BsuRI	GGCC	1 cut(s)	605
BtsCI	GGATG	2 cut(s)	139, 511
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	3 cut(s)	258, 603, 621
CaiI	CAGNNNCTG	1 cut(s)	601
CfoI	GCGC	2 cut(s)	256, 396
CviAII	CATG	2 cut(s)	257, 572
CviJI	RGCY	5 cut(s)	58, 217, 251, 601, 605
CviKI_1	RGCY	5 cut(s)	58, 217, 251, 601, 605
DdeI	CTNAG	2 cut(s)	54, 594
DpnI	GATC	5 cut(s)	322, 337, 555, 698, 728
DpnII	GATC	5 cut(s)	320, 335, 553, 696, 726
DraIII	CACNNNGTG	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Eco31I	GGTCTC	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	528
EcoRII	CCWGG	3 cut(s)	157, 425, 523
EcoT22I	ATGCAT	2 cut(s)	262, 274
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	2 cut(s)	260, 575
FatI	CATG	2 cut(s)	256, 571
FauNDI	CATATG	2 cut(s)	220, 274
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	4 cut(s)	249, 252, 599, 624
FokI	GGATG	2 cut(s)	146, 498
Fsp4HI	GCNGC	4 cut(s)	249, 252, 599, 624
FspBI	CTAG	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	255
GlaI	GCGC	2 cut(s)	255, 395
GluI	GCNGC	4 cut(s)	249, 252, 599, 624
HaeIII	GGCC	1 cut(s)	605
HhaI	GCGC	2 cut(s)	256, 396
Hin1II	CATG	2 cut(s)	260, 575
Hin6I	GCGC	2 cut(s)	254, 394
HinP1I	GCGC	2 cut(s)	254, 394
HinfI	GANTC	4 cut(s)	145, 291, 580, 682
HphI	GGTGA	3 cut(s)	32, 89, 466
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	564
Hpy188III	TCNNGA	6 cut(s)	131, 149, 230, 318, 584, 644
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	104, 531, 715, 725
HpyCH4V	TGCA	5 cut(s)	260, 272, 353, 438, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 391
HpyF3I	CTNAG	2 cut(s)	54, 594
Hsp92II	CATG	2 cut(s)	260, 575
HspAI	GCGC	2 cut(s)	254, 394
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	320, 335, 553, 696, 726
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	2 cut(s)	113, 502
Lsp1109I	GCAGC	4 cut(s)	238, 260, 610, 610
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	362, 484
MalI	GATC	5 cut(s)	322, 337, 555, 698, 728
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	5 cut(s)	320, 335, 553, 696, 726
MboII	GAAGA	2 cut(s)	680, 706
MflI	RGATCY	2 cut(s)	335, 696
MhlI	GDGCHC	4 cut(s)	355, 507, 663, 675
MlsI	TGGCCA	1 cut(s)	605
MluCI	AATT	6 cut(s)	5, 63, 171, 297, 402, 491
MluNI	TGGCCA	1 cut(s)	605
MlyI	GAGTC	1 cut(s)	691
MmeI	TCCRAC	2 cut(s)	145, 724
MnlI	CCTC	3 cut(s)	28, 364, 450
Mox20I	TGGCCA	1 cut(s)	605
Mph1103I	ATGCAT	2 cut(s)	262, 274
MscI	TGGCCA	1 cut(s)	605
MslI	CAYNNNNRTG	2 cut(s)	284, 358
Msp20I	TGGCCA	1 cut(s)	605
MspA1I	CMGCKG	2 cut(s)	251, 601
MspR9I	CCNGG	3 cut(s)	159, 427, 525
Mva1269I	GAATGC	2 cut(s)	116, 387
MvaI	CCWGG	3 cut(s)	159, 427, 525
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	257, 391
NdeI	CATATG	2 cut(s)	220, 274
NdeII	GATC	5 cut(s)	320, 335, 553, 696, 726
NlaIII	CATG	2 cut(s)	260, 575
NlaIV	GGNNCC	1 cut(s)	204
NsbI	TGCGCA	1 cut(s)	255
NsiI	ATGCAT	2 cut(s)	262, 274
NspI	RCATGY	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	260
PaqCI	CACCTGC	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PctI	GAATGC	2 cut(s)	116, 387
PfeI	GAWTC	3 cut(s)	145, 291, 580
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	250, 253, 600, 625
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PshAI	GACNNNNGTC	1 cut(s)	428
PsiI	TTATAA	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	157, 425, 523
PspGI	CCWGG	3 cut(s)	157, 425, 523
PspN4I	GGNNCC	1 cut(s)	204
PsrI	GAACNNNNNNTAC	2 cut(s)	186, 218
PstNI	CAGNNNCTG	1 cut(s)	601
PsuI	RGATCY	2 cut(s)	335, 696
PvuII	CAGCTG	2 cut(s)	251, 601
RseI	CAYNNNNRTG	2 cut(s)	284, 358
SapI	GCTCTTC	1 cut(s)	663
SatI	GCNGC	4 cut(s)	249, 252, 599, 624
Sau3AI	GATC	5 cut(s)	320, 335, 553, 696, 726
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	3 cut(s)	159, 427, 525
SduI	GDGCHC	4 cut(s)	355, 507, 663, 675
SetI	ASST	9 cut(s)	39, 60, 79, 253, 526, 535, 603, 632, 651
SmiMI	CAYNNNNRTG	2 cut(s)	284, 358
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	6 cut(s)	5, 63, 171, 297, 402, 491
SsiI	CCGC	1 cut(s)	419
SspI	AATATT	1 cut(s)	654
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	3 cut(s)	157, 425, 523
TaqI	TCGA	4 cut(s)	319, 535, 645, 729
TasI	AATT	6 cut(s)	5, 63, 171, 297, 402, 491
TfiI	GAWTC	3 cut(s)	145, 291, 580
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	4 cut(s)	248, 251, 598, 623
TspDTI	ATGAA	4 cut(s)	96, 158, 283, 582
TspRI	CASTG	1 cut(s)	204
VneI	GTGCAC	1 cut(s)	351
XagI	CCTNNNNNAGG	1 cut(s)	528
XapI	RAATTY	2 cut(s)	5, 491
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	2 cut(s)	262, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.