Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Forward (+)

22843260 .. 22844090

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTTTCGTTACTCGTATGAACGATATGTATCGATCCAAACATGATGGAACCGTCATTGGGAGGACATTGGTATGCAACAAAGAGGGTTTCCGAAAGCCTGACAGGCGTGACAAGAAGACACTAAAGCCTCGGACTCAGACTAGGGTAGGTTGTAGGGCAATGCTGTCCATCAAGAAACTCAGTGTTGGGAACTGGGTTGTTAAATGGTTCGTTAAGGAGCACACTCATGCATTGACTCCCAATAAAGCTCCAAAAGGACTCATCGATGATCAAGTACTGGACGATAAGACAAAGATTGCAGAGTTAACTAACGAGCTGTTCCTTGAGAGAAAGCGGTCTGCTGCACTTAGAGAAATAGTTGATCTTCTATTTAATCACATTGAGGAACATACGCAAGACCTGTCGAAGAAACTTCAGCATGTTGTTGACAATGTCAAGGAGCTTGAATCTGAAGGGAAAAATTGTCGTAGCCTCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

161

Amino Acids

18.47

Weight (kDa)

9.68

Isoelectric Point (pI)

25.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	30
AcuI	CTGAAG	2 cut(s)	401, 474
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	449
AluBI	AGCT	3 cut(s)	251, 319, 445
AluI	AGCT	3 cut(s)	251, 319, 445
Alw21I	GWGCWC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	41, 179
BclI	TGATCA	1 cut(s)	271
BfaI	CTAG	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmcAI	AGTACT	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	347
Bsa29I	ATCGAT	2 cut(s)	34, 267
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	131, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	200, 285
Bse3DI	GCAATG	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	30
BseCI	ATCGAT	2 cut(s)	34, 267
BseDI	CCNNGG	2 cut(s)	131, 475
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	152, 196
BseNI	ACTGG	2 cut(s)	200, 285
BseXI	GCAGC	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	330
BshVI	ATCGAT	2 cut(s)	34, 267
BsiHKAI	GWGCWC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	35, 271, 364
BspACI	CCGC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	151, 195
BspDI	ATCGAT	2 cut(s)	34, 267
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	200, 285
BssECI	CCNNGG	2 cut(s)	131, 475
BssMI	GATC	3 cut(s)	35, 271, 364
Bst4CI	ACNGT	1 cut(s)	55
BstDEI	CTNAG	3 cut(s)	138, 182, 350
BstKTI	GATC	3 cut(s)	38, 274, 367
BstMBI	GATC	3 cut(s)	35, 271, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	125
Bsu15I	ATCGAT	2 cut(s)	34, 267
BsuTUI	ATCGAT	2 cut(s)	34, 267
BtsIMutI	CAGTG	1 cut(s)	190
ClaI	ATCGAT	2 cut(s)	34, 267
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	3 cut(s)	44, 230, 422
CviJI	RGCY	6 cut(s)	100, 130, 251, 319, 445, 474
CviKI_1	RGCY	6 cut(s)	100, 130, 251, 319, 445, 474
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	3 cut(s)	138, 182, 350
DpnI	GATC	3 cut(s)	37, 273, 366
DpnII	GATC	3 cut(s)	35, 271, 364
Eco57I	CTGAAG	2 cut(s)	401, 474
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	3 cut(s)	47, 233, 425
FaiI	YATR	7 cut(s)	20, 29, 45, 76, 231, 393, 423
FatI	CATG	3 cut(s)	43, 229, 421
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	1 cut(s)	345
Hin1II	CATG	3 cut(s)	47, 233, 425
HincII	GTYRAC	2 cut(s)	309, 430
HindII	GTYRAC	2 cut(s)	309, 430
HinfI	GANTC	4 cut(s)	136, 238, 261, 449
HpaI	GTTAAC	1 cut(s)	309
Hpy166II	GTNNAC	2 cut(s)	309, 430
Hpy188I	TCNGA	5 cut(s)	95, 135, 141, 454, 479
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	2 cut(s)	309, 430
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	4 cut(s)	78, 233, 302, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	3 cut(s)	138, 182, 350
Hsp92II	CATG	3 cut(s)	47, 233, 425
Ksp22I	TGATCA	1 cut(s)	271
KspAI	GTTAAC	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	35, 271, 364
LmnI	GCTCC	3 cut(s)	220, 256, 442
LpnPI	CCDG	5 cut(s)	91, 114, 181, 266, 416
Lsp1109I	GCAGC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	10, 110
MalI	GATC	3 cut(s)	37, 273, 366
MboI	GATC	3 cut(s)	35, 271, 364
MboII	GAAGA	3 cut(s)	130, 359, 421
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	3 cut(s)	130, 232, 255
MnlI	CCTC	4 cut(s)	57, 79, 141, 379
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	4 cut(s)	204, 216, 308, 375
MslI	CAYNNNNRTG	2 cut(s)	73, 228
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	3 cut(s)	35, 271, 364
NlaIII	CATG	3 cut(s)	47, 233, 425
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	449
PflFI	GACNNNGTC	1 cut(s)	434
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	3 cut(s)	130, 232, 255
PpsI	GAGTC	3 cut(s)	130, 232, 255
PspN4I	GGNNCC	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	2 cut(s)	73, 228
SaqAI	TTAA	4 cut(s)	204, 216, 308, 375
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	3 cut(s)	35, 271, 364
ScaI	AGTACT	1 cut(s)	279
SchI	GAGTC	3 cut(s)	130, 232, 255
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	5 cut(s)	154, 253, 321, 405, 447
SmiMI	CAYNNNNRTG	2 cut(s)	73, 228
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	34, 267, 407
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	4 cut(s)	204, 216, 308, 375
Tru9I	TTAA	4 cut(s)	204, 216, 308, 375
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	434
XceI	RCATGY	1 cut(s)	425
XspI	CTAG	1 cut(s)	144
ZrmI	AGTACT	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.