Rh4AG139000

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001037
Physical Location & Seq
Reverse (-)
35533449 .. 35535407
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG139000.1

Sequence Viewer

Length: 768 bp
ATGGCTGCAGTGGAGTTTACAGTTGATGGTGATGTTGATGGTGAGGTTGTGGGCAGTTCTGCTGAGATGGAAGGAAGTAGAGCAGGTGATGAAAATGAAACCGGTGCAAGTTCTGTTGAAGGAGCATTCCAACTGGGTCAGGAAGAAAAGATAATTCTAGATTCATCTGGAAGGAACATAATTCCATCGGCAATTCCTGTAGTATCAGTTGTTTCAGCAGATGAGCCATATGTTGGTCAAGAGTTTGAAACGGAAGCAGCTGCTCATGCATTTTATAATGCATATGCCACTCATGTGGGATTCATAATTCGTGTAAGCAAACTCTCTCGATCAAGGCGGGATGGAACTGCCATTGGCCGTGCACTTGTTTGTAATAAAGAGGGTTATAGAATGCCTGACAAGCGTGAAAAAATTGTAAGGCAAAGAGCAGAGACCAGGGTTGGTTGCAGAGCAATGATTTTGGTGAGAAAAGTAAGTTCTGGTAAATGGGTTGTCACAAAGTTTGTAAAGGAGCACACTCATCCTTTGACACCTGGGAAAGGTCGAAGGGATTGCATTTATGATCAATATCCGAATGAACATGACAAGATTCGGGAACTATCCCAGCAGCTGGCCGTAGAGAAGAAACGTGCTGCAACATATAAAAGACATCTTGACCTAATATTTGAGCATATTGAAGAGCACAATGAGAGCCTATCAAAGAAGATCCAACACATAGTTGATAGTGTGAAGGAGATTGAAAGTAAGGAGCAGCAAGTTTACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

255

Amino Acids

28.59

Weight (kDa)

6.52

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 91 - 177 5.4e-30 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 74
AccB7I CCANNNNNTGG 2 cut(s) 233, 610
AciI CCGC 1 cut(s) 337
AclWI GGATC 1 cut(s) 700
AcoI YGGCCR 2 cut(s) 355, 612
AfiI CCNNNNNNNGG 3 cut(s) 233, 539, 610
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 4 cut(s) 119, 248, 677, 740
AjnI CCWGG 2 cut(s) 434, 532
AleI CACNNNNGTG 1 cut(s) 293
AluBI AGCT 2 cut(s) 260, 610
AluI AGCT 2 cut(s) 260, 610
Alw21I GWGCWC 3 cut(s) 364, 516, 684
Alw26I GTCTC 1 cut(s) 425
Alw44I GTGCAC 1 cut(s) 360
AlwI GGATC 1 cut(s) 700
AlwNI CAGNNNCTG 1 cut(s) 610
AoxI GGCC 2 cut(s) 355, 612
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 6 cut(s) 5, 257, 260, 607, 632, 751
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AsiGI ACCGGT 1 cut(s) 101
AsuHPI GGTGA 4 cut(s) 41, 53, 98, 475
BaeGI GKGCMC 1 cut(s) 364
Bbv12I GWGCWC 3 cut(s) 364, 516, 684
BbvI GCAGC 5 cut(s) 247, 269, 619, 619, 763
BccI CCATC 5 cut(s) 20, 32, 61, 193, 335
BceAI ACGGC 2 cut(s) 342, 599
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 2 cut(s) 436, 534
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 2 cut(s) 6, 198
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 6 cut(s) 6, 258, 261, 608, 633, 752
BlsI GCNGC 6 cut(s) 7, 259, 262, 609, 634, 753
Bme1390I CCNGG 2 cut(s) 436, 534
BmrFI CCNGG 2 cut(s) 436, 534
BmrI ACTGGG 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 435, 533
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 539, 610
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 2 cut(s) 436, 534
BseDI CCNNGG 2 cut(s) 435, 533
BseGI GGATG 2 cut(s) 346, 520
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 3 cut(s) 233, 539, 610
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 5 cut(s) 247, 269, 619, 619, 763
BseYI CCCAGC 1 cut(s) 603
BshFI GGCC 2 cut(s) 357, 614
BshTI ACCGGT 1 cut(s) 101
BsiHKAI GWGCWC 3 cut(s) 364, 516, 684
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 233, 539, 610
BsmAI GTCTC 1 cut(s) 425
BsmI GAATGC 2 cut(s) 125, 396
BsnI GGCC 2 cut(s) 357, 614
Bso31I GGTCTC 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 364, 516, 684
Bsp143I GATC 3 cut(s) 329, 562, 705
BspACI CCGC 1 cut(s) 337
BspANI GGCC 2 cut(s) 357, 614
BspCNI CTCAG 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 74
BspPI GGATC 1 cut(s) 700
BspQI GCTCTTC 1 cut(s) 672
BspTNI GGTCTC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 435, 533
BssMI GATC 3 cut(s) 329, 562, 705
Bst2UI CCWGG 2 cut(s) 436, 534
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 1 cut(s) 63
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 2 cut(s) 346, 520
BstKTI GATC 3 cut(s) 332, 565, 708
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 3 cut(s) 329, 562, 705
BstMWI GCNNNNNNNGC 2 cut(s) 266, 400
BstNI CCWGG 2 cut(s) 436, 534
BstSCI CCNGG 2 cut(s) 434, 532
BstSFI CTRYAG 2 cut(s) 6, 198
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 5 cut(s) 247, 269, 619, 619, 763
BstX2I RGATCY 1 cut(s) 705
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 1 cut(s) 705
BsuRI GGCC 2 cut(s) 357, 614
BtsCI GGATG 2 cut(s) 346, 520
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 612
CaiI CAGNNNCTG 1 cut(s) 610
Cfr10I RCCGGY 1 cut(s) 101
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 3 cut(s) 266, 293, 581
CviJI RGCY 7 cut(s) 5, 226, 260, 357, 610, 614, 693
CviKI_1 RGCY 7 cut(s) 5, 226, 260, 357, 610, 614, 693
DdeI CTNAG 1 cut(s) 63
DpnI GATC 3 cut(s) 331, 564, 707
DpnII GATC 3 cut(s) 329, 562, 705
EaeI YGGCCR 2 cut(s) 355, 612
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco31I GGTCTC 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoRII CCWGG 2 cut(s) 434, 532
EcoT22I ATGCAT 2 cut(s) 271, 283
FaeI CATG 3 cut(s) 269, 296, 584
FatI CATG 3 cut(s) 265, 292, 580
FauI CCCGC 1 cut(s) 330
FauNDI CATATG 2 cut(s) 229, 283
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 6 cut(s) 6, 258, 261, 608, 633, 752
FokI GGATG 2 cut(s) 353, 507
Fsp4HI GCNGC 6 cut(s) 6, 258, 261, 608, 633, 752
FspBI CTAG 1 cut(s) 158
GluI GCNGC 6 cut(s) 6, 258, 261, 608, 633, 752
GsaI CCCAGC 1 cut(s) 607
HaeIII GGCC 2 cut(s) 357, 614
HapII CCGG 1 cut(s) 102
Hin1II CATG 3 cut(s) 269, 296, 584
HinfI GANTC 3 cut(s) 161, 300, 589
HpaII CCGG 1 cut(s) 102
HphI GGTGA 4 cut(s) 41, 53, 98, 475
Hpy166II GTNNAC 3 cut(s) 18, 362, 760
Hpy188I TCNGA 1 cut(s) 573
Hpy188III TCNNGA 7 cut(s) 140, 158, 168, 239, 327, 593, 653
Hpy8I GTNNAC 3 cut(s) 18, 362, 760
HpyAV CCTTC 5 cut(s) 65, 113, 165, 540, 724
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 8 cut(s) 8, 107, 269, 281, 362, 447, 555, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 400
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 628
Hsp92II CATG 3 cut(s) 269, 296, 584
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 3 cut(s) 329, 562, 705
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 3 cut(s) 122, 511, 748
Lsp1109I GCAGC 5 cut(s) 247, 269, 619, 619, 763
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 628
MaeIII GTNAC 1 cut(s) 493
MalI GATC 3 cut(s) 331, 564, 707
MboI GATC 3 cut(s) 329, 562, 705
MboII GAAGA 4 cut(s) 155, 634, 689, 715
MflI RGATCY 1 cut(s) 705
MhlI GDGCHC 3 cut(s) 364, 516, 684
MluCI AATT 5 cut(s) 153, 180, 192, 306, 411
MmeI TCCRAC 2 cut(s) 154, 733
MnlI CCTC 2 cut(s) 37, 373
Mph1103I ATGCAT 2 cut(s) 271, 283
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 2 cut(s) 260, 610
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 436, 534
Mva1269I GAATGC 2 cut(s) 125, 396
MvaI CCWGG 2 cut(s) 436, 534
MwoI GCNNNNNNNGC 2 cut(s) 266, 400
NdeI CATATG 2 cut(s) 229, 283
NdeII GATC 3 cut(s) 329, 562, 705
NlaIII CATG 3 cut(s) 269, 296, 584
NmuCI GTSAC 1 cut(s) 493
NsiI ATGCAT 2 cut(s) 271, 283
OliI CACNNNNGTG 1 cut(s) 293
PaqCI CACCTGC 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 672
PctI GAATGC 2 cut(s) 125, 396
PfeI GAWTC 3 cut(s) 161, 300, 589
PflMI CCANNNNNTGG 2 cut(s) 233, 610
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 6 cut(s) 7, 259, 262, 609, 634, 753
PsiI TTATAA 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 434, 532
PspFI CCCAGC 1 cut(s) 603
PspGI CCWGG 2 cut(s) 434, 532
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 705
PvuII CAGCTG 2 cut(s) 260, 610
RseI CAYNNNNRTG 1 cut(s) 293
SapI GCTCTTC 1 cut(s) 672
SatI GCNGC 6 cut(s) 6, 258, 261, 608, 633, 752
Sau3AI GATC 3 cut(s) 329, 562, 705
ScrFI CCNGG 2 cut(s) 436, 534
SduI GDGCHC 3 cut(s) 364, 516, 684
SetI ASST 8 cut(s) 48, 88, 262, 535, 544, 612, 631, 660
SfcI CTRYAG 2 cut(s) 6, 198
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 5 cut(s) 153, 180, 192, 306, 411
SsiI CCGC 1 cut(s) 337
SspI AATATT 1 cut(s) 663
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 434, 532
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 631
TaqI TCGA 2 cut(s) 328, 544
TasI AATT 5 cut(s) 153, 180, 192, 306, 411
TfiI GAWTC 3 cut(s) 161, 300, 589
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 6 cut(s) 5, 257, 260, 607, 632, 751
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 5 cut(s) 105, 111, 153, 292, 591
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 15
Van91I CCANNNNNTGG 2 cut(s) 233, 610
VneI GTGCAC 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 537
XbaI TCTAGA 1 cut(s) 157
XspI CTAG 1 cut(s) 158
Zsp2I ATGCAT 2 cut(s) 271, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.