Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Forward (+)

32262227 .. 32264302

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1247800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATTCATGAATCTGATGGTGCATCTGTAGGAACTTCTCTTGTAGATATGAGTCATCTTTTTGGACAGGATCATGACGATGATCAAAGGACTCGAAATTCTTGTAAAGATGGATCAAGTCTGGTCCAACCACATGAGCCGTATGTGGGTCAGGAATTCGACTCACAAGAAAGTGCATTGCCTCGGACTCAGACTAGGGTAGGTTGTAGGGCAATGCTGTCCGTCAAGAAACTCAGTGTTGGGAAATGGGTTGTTAAATGGTTCGTTAAGGAGCACACTCATGCATTGACTCCCAATAAAGCTGCAAAAGGACTCGTCGATGATCAAGTACCGGACGATAAGACAAAGATTGCAGAGTTAACTAACGAGCTGTTCCTCGAGAGAAAGCGGTCTGCTGCACTTAGAGAAATAGTTGATCTTCTATTTAATCACATTGAGGAACATACGCAAGACCTGTCGAAGAAACTTCAGCATGTTGTTGACAATGTCAAGGAGCTTGAATCGGAAGGGAAAAATTGTCGTAGCCTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

178

Amino Acids

19.91

Weight (kDa)

5.98

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	54 - 97	1.7e-10	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	2 cut(s)	78, 121
AcsI	RAATTY	2 cut(s)	97, 155
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	500
AluBI	AGCT	3 cut(s)	302, 370, 496
AluI	AGCT	3 cut(s)	302, 370, 496
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	78, 121
Ama87I	CYCGRG	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	302, 395
ApoI	RAATTY	2 cut(s)	97, 155
AspS9I	GGNCC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	289, 382
BccI	CCATC	2 cut(s)	11, 104
BceAI	ACGGC	1 cut(s)	124
BclI	TGATCA	2 cut(s)	82, 322
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	2 cut(s)	303, 396
BlsI	GCNGC	2 cut(s)	304, 397
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	182, 526
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse3DI	GCAATG	2 cut(s)	176, 219
BseDI	CCNNGG	2 cut(s)	182, 526
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	2 cut(s)	176, 219
BseMII	CTCAG	2 cut(s)	203, 247
BseXI	GCAGC	2 cut(s)	289, 382
BsgI	GTGCAG	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	5 cut(s)	70, 82, 113, 322, 415
BspACI	CCGC	1 cut(s)	388
BspCNI	CTCAG	2 cut(s)	202, 246
BspHI	TCATGA	2 cut(s)	7, 73
BspPI	GGATC	2 cut(s)	78, 121
BsrDI	GCAATG	2 cut(s)	176, 219
BssECI	CCNNGG	2 cut(s)	182, 526
BssMI	GATC	5 cut(s)	70, 82, 113, 322, 415
BssT1I	CCWWGG	1 cut(s)	526
BstDEI	CTNAG	3 cut(s)	189, 233, 401
BstKTI	GATC	5 cut(s)	73, 85, 116, 325, 418
BstMBI	GATC	5 cut(s)	70, 82, 113, 322, 415
BstNSI	RCATGY	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	289, 382
BtsIMutI	CAGTG	1 cut(s)	241
CciI	TCATGA	2 cut(s)	7, 73
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	5 cut(s)	8, 74, 134, 281, 473
CviJI	RGCY	5 cut(s)	139, 302, 370, 496, 525
CviKI_1	RGCY	5 cut(s)	139, 302, 370, 496, 525
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	3 cut(s)	189, 233, 401
DpnI	GATC	5 cut(s)	72, 84, 115, 324, 417
DpnII	GATC	5 cut(s)	70, 82, 113, 322, 415
Eco130I	CCWWGG	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	526
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	5 cut(s)	11, 77, 137, 284, 476
FaiI	YATR	8 cut(s)	9, 50, 75, 135, 144, 282, 444, 474
FatI	CATG	5 cut(s)	7, 73, 133, 280, 472
FbaI	TGATCA	2 cut(s)	82, 322
Fnu4HI	GCNGC	2 cut(s)	303, 396
Fsp4HI	GCNGC	2 cut(s)	303, 396
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	303, 396
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	5 cut(s)	11, 77, 137, 284, 476
HincII	GTYRAC	2 cut(s)	360, 481
HindII	GTYRAC	2 cut(s)	360, 481
HinfI	GANTC	9 cut(s)	4, 11, 52, 91, 161, 187, 289, 312, 500
HpaI	GTTAAC	1 cut(s)	360
HpaII	CCGG	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	360, 481
Hpy188I	TCNGA	4 cut(s)	16, 186, 192, 505
Hpy188III	TCNNGA	5 cut(s)	8, 74, 152, 226, 379
Hpy8I	GTNNAC	2 cut(s)	360, 481
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	500
HpyCH4V	TGCA	6 cut(s)	23, 176, 284, 305, 353, 398
HpyF3I	CTNAG	3 cut(s)	189, 233, 401
Hsp92II	CATG	5 cut(s)	11, 77, 137, 284, 476
Ksp22I	TGATCA	2 cut(s)	82, 322
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	70, 82, 113, 322, 415
LmnI	GCTCC	2 cut(s)	271, 493
LpnPI	CCDG	5 cut(s)	53, 107, 137, 345, 467
Lsp1109I	GCAGC	2 cut(s)	289, 382
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	195
MalI	GATC	5 cut(s)	72, 84, 115, 324, 417
MboI	GATC	5 cut(s)	70, 82, 113, 322, 415
MboII	GAAGA	2 cut(s)	410, 472
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	3 cut(s)	97, 155, 514
MlyI	GAGTC	6 cut(s)	61, 85, 155, 181, 283, 306
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	3 cut(s)	192, 386, 430
Mph1103I	ATGCAT	1 cut(s)	286
MseI	TTAA	4 cut(s)	255, 267, 359, 426
MslI	CAYNNNNRTG	2 cut(s)	78, 279
MspI	CCGG	1 cut(s)	332
NdeII	GATC	5 cut(s)	70, 82, 113, 322, 415
NlaIII	CATG	5 cut(s)	11, 77, 137, 284, 476
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	377
PagI	TCATGA	2 cut(s)	7, 73
PfeI	GAWTC	3 cut(s)	4, 11, 500
PflFI	GACNNNGTC	1 cut(s)	485
PkrI	GCNGC	2 cut(s)	304, 397
PleI	GAGTC	6 cut(s)	60, 85, 155, 181, 283, 306
PpsI	GAGTC	6 cut(s)	60, 85, 155, 181, 283, 306
PspPI	GGNCC	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	485
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	2 cut(s)	78, 279
SaqAI	TTAA	4 cut(s)	255, 267, 359, 426
SatI	GCNGC	2 cut(s)	303, 396
Sau3AI	GATC	5 cut(s)	70, 82, 113, 322, 415
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	6 cut(s)	61, 85, 155, 181, 283, 306
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	5 cut(s)	205, 304, 372, 456, 498
SfaNI	GCATC	1 cut(s)	32
SfcI	CTRYAG	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	78, 279
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	97, 155, 514
SsiI	CCGC	1 cut(s)	388
SspMI	CTAG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	526
TaqI	TCGA	5 cut(s)	94, 159, 318, 378, 458
TasI	AATT	3 cut(s)	97, 155, 514
TfiI	GAWTC	3 cut(s)	4, 11, 500
Tru1I	TTAA	4 cut(s)	255, 267, 359, 426
Tru9I	TTAA	4 cut(s)	255, 267, 359, 426
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	2 cut(s)	302, 395
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	2 cut(s)	97, 155
XceI	RCATGY	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	377
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.