Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Reverse (-)

243845 .. 246365

Gene Structure 2521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGATTCTGGAATTGATACACAGACTCAAAATGGGGCATCGGATAACTTAGCTGATGTTGAGCTTAGATTAAATAACGATGATGCAATTCTCGGAACTTCTGTTGGGGAGGTCTCTAATATTGGGCAAACTGAGCAAGTGGGTCAAAATTCTGCAAGCTTGGAGGTTGAAGCAGATGAACCATATGTGGGTCAGGAATTTGAATCAGAAGCAGCTGCACATGCATTTTACAATACATATGCTCTGAGAGTAGGTTTCAGAACACGTGTAAACGATCTATCTCGCTCTAGGGTTGATGGGTCTGTCATTGCTCGAACACTGGTATGTAACAAAGAGGGTTATCGAGTGGCTGATAAGCGTGATAGGAAGAGTGTGAGACCTCGGCCCCCAACTAGGGTTGGTTGCAAGGCCATGATTTCAATGAAGAAACTGAGTAATGGAAACTGGGTGGTTGCAAAGTTTGTCAAGGAGCACGCCCATTCCCTGACTCCTGGAAAGAGTGAAAACGGATTGAATGATGAATCTTCAGATGAACAGATAAAAATCAAAGAATTAACTCAACAGCTGATGGTTGAGCGAAAGAGGTCTGCTTCATATAGAAAAATCATAGACCTCCTGTTTAATCACATTGACGACCACACTCAACACCTCTCACAAAAGATCCTGCGCGTTAATGACATTCTCAAAGACATCGCATCCTCTGAAGCAAAAGGCCGTCAAAATCTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

243

Amino Acids

27.11

Weight (kDa)

7.03

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	76 - 163	1e-28	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	669
AciI	CCGC	1 cut(s)	727
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	2 cut(s)	148, 197
AcuI	CTGAAG	2 cut(s)	510, 723
AcvI	CACGTG	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	188, 393, 394
AflIII	ACRYGT	2 cut(s)	263, 265
AgsI	TTSAA	4 cut(s)	170, 203, 420, 514
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	5 cut(s)	53, 64, 159, 215, 565
AluI	AGCT	5 cut(s)	53, 64, 159, 215, 565
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	2 cut(s)	118, 370
AlwI	GGATC	1 cut(s)	655
AoxI	GGCC	3 cut(s)	383, 408, 712
ApeKI	GCWGC	2 cut(s)	212, 215
ApoI	RAATTY	2 cut(s)	148, 197
AspLEI	GCGC	1 cut(s)	669
AspS9I	GGNCC	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	202, 224
BccI	CCATC	2 cut(s)	290, 562
BceAI	ACGGC	1 cut(s)	699
BciT130I	CCWGG	1 cut(s)	492
BcoDI	GTCTC	2 cut(s)	118, 370
BfaI	CTAG	3 cut(s)	288, 393, 730
BisI	GCNGC	2 cut(s)	213, 216
BlsI	GCNGC	2 cut(s)	214, 217
Bme1390I	CCNGG	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	492
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	3 cut(s)	47, 73, 704
BmuI	ACTGGG	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	542
BsaI	GGTCTC	2 cut(s)	118, 370
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 393, 394
Bse1I	ACTGG	2 cut(s)	324, 449
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	695
BseJI	GATNNNNATC	1 cut(s)	542
BseLI	CCNNNNNNNGG	3 cut(s)	188, 393, 394
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	123, 236, 422
BseNI	ACTGG	2 cut(s)	324, 449
BseXI	GCAGC	2 cut(s)	202, 224
BsgI	GTGCAG	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	669
BshFI	GGCC	3 cut(s)	385, 410, 714
BsiHKAI	GWGCWC	1 cut(s)	474
BslI	CCNNNNNNNGG	3 cut(s)	188, 393, 394
BsmAI	GTCTC	2 cut(s)	118, 370
BsnI	GGCC	3 cut(s)	385, 410, 714
Bso31I	GGTCTC	2 cut(s)	118, 370
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	274, 660
BspACI	CCGC	1 cut(s)	727
BspANI	GGCC	3 cut(s)	385, 410, 714
BspCNI	CTCAG	3 cut(s)	124, 237, 423
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	655
BspTNI	GGTCTC	2 cut(s)	118, 370
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	324, 449
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	274, 660
Bst2UI	CCWGG	1 cut(s)	492
Bst6I	CTCTTC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	157, 474
BstDEI	CTNAG	5 cut(s)	49, 65, 132, 245, 431
BstF5I	GGATG	1 cut(s)	695
BstFNI	CGCG	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	669
BstKTI	GATC	2 cut(s)	277, 663
BstMAI	GTCTC	2 cut(s)	118, 370
BstMBI	GATC	2 cut(s)	274, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 221
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	490
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	202, 224
BstX2I	RGATCY	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	660
BsuRI	GGCC	3 cut(s)	385, 410, 714
BtgZI	GCGATG	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	695
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	157, 474
CfoI	GCGC	1 cut(s)	669
Cfr13I	GGNCC	1 cut(s)	384
CviAII	CATG	2 cut(s)	221, 412
CviJI	RGCY	9 cut(s)	53, 64, 159, 215, 350, 385, 410, 565, 714
CviKI_1	RGCY	9 cut(s)	53, 64, 159, 215, 350, 385, 410, 565, 714
DdeI	CTNAG	5 cut(s)	49, 65, 132, 245, 431
DpnI	GATC	2 cut(s)	276, 662
DpnII	GATC	2 cut(s)	274, 660
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco31I	GGTCTC	2 cut(s)	118, 370
Eco57I	CTGAAG	2 cut(s)	510, 723
Eco72I	CACGTG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	2 cut(s)	224, 415
FatI	CATG	2 cut(s)	220, 411
FauNDI	CATATG	2 cut(s)	184, 238
Fnu4HI	GCNGC	2 cut(s)	213, 216
FokI	GGATG	1 cut(s)	682
Fsp4HI	GCNGC	2 cut(s)	213, 216
FspBI	CTAG	3 cut(s)	288, 393, 730
GlaI	GCGC	1 cut(s)	668
GluI	GCNGC	2 cut(s)	213, 216
HaeIII	GGCC	3 cut(s)	385, 410, 714
HhaI	GCGC	1 cut(s)	669
Hin1II	CATG	2 cut(s)	224, 415
Hin6I	GCGC	1 cut(s)	667
HinP1I	GCGC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	5 cut(s)	5, 25, 203, 487, 521
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	7 cut(s)	43, 95, 208, 246, 260, 529, 703
Hpy188III	TCNNGA	2 cut(s)	9, 194
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	6 cut(s)	86, 155, 218, 224, 405, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 221
HpyF3I	CTNAG	5 cut(s)	49, 65, 132, 245, 431
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	224, 415
HspAI	GCGC	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	274, 660
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	8 cut(s)	179, 305, 430, 477, 497, 504, 629, 677
Lsp1109I	GCAGC	2 cut(s)	202, 224
LweI	GCATC	3 cut(s)	47, 73, 704
MaeI	CTAG	3 cut(s)	288, 393, 730
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	276, 662
MboI	GATC	2 cut(s)	274, 660
MboII	GAAGA	3 cut(s)	379, 436, 516
MflI	RGATCY	1 cut(s)	660
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	5 cut(s)	12, 87, 148, 197, 551
MlyI	GAGTC	2 cut(s)	19, 481
MnlI	CCTC	8 cut(s)	103, 157, 328, 390, 576, 623, 659, 709
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	4 cut(s)	71, 554, 621, 672
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	2 cut(s)	215, 565
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	2 cut(s)	133, 221
NdeI	CATATG	2 cut(s)	184, 238
NdeII	GATC	2 cut(s)	274, 660
NlaIII	CATG	2 cut(s)	224, 415
NlaIV	GGNNCC	1 cut(s)	386
NmeAIII	GCCGAG	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	5, 203, 521
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	214, 217
PleI	GAGTC	2 cut(s)	19, 481
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
PpsI	GAGTC	2 cut(s)	19, 481
Ppu21I	YACGTR	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	490
PspCI	CACGTG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	660
PvuII	CAGCTG	2 cut(s)	215, 565
RseI	CAYNNNNRTG	1 cut(s)	322
SaqAI	TTAA	4 cut(s)	71, 554, 621, 672
SatI	GCNGC	2 cut(s)	213, 216
Sau3AI	GATC	2 cut(s)	274, 660
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	2 cut(s)	19, 481
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	3 cut(s)	47, 73, 704
SmiMI	CAYNNNNRTG	1 cut(s)	322
Sse9I	AATT	5 cut(s)	12, 87, 148, 197, 551
SsiI	CCGC	1 cut(s)	727
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	3 cut(s)	288, 393, 730
StyD4I	CCNGG	1 cut(s)	490
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	313, 343
TasI	AATT	5 cut(s)	12, 87, 148, 197, 551
TfiI	GAWTC	3 cut(s)	5, 203, 521
Tru1I	TTAA	4 cut(s)	71, 554, 621, 672
Tru9I	TTAA	4 cut(s)	71, 554, 621, 672
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	2 cut(s)	212, 215
TspDTI	ATGAA	5 cut(s)	192, 437, 534, 546, 582
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	2 cut(s)	148, 197
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	3 cut(s)	288, 393, 730
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.