Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Reverse (-)

125047 .. 127211

Gene Structure 2165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00151.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTTCTGTACCCGATATAAATGTAGCTCATGAGGTCTCAAATGCCTCAACTGATGCTGAGTTCAAGCGTTATAATGATGGTGCGGTTGTAGGCACTTCTCTTCAGAAGATACTTTGGGTTGTACAAAATGATGACATGACTCAAAACTCTTCTCAAGATGGATCTCCAGTCGAAGTTGATGAGCCATATGTGGGTCAGGAATTTGGTACAGAAGTAGATGCACAGGCTTTTTATAATGTCTATGGCTTGCGTATGGGTTTCAATACTCGTATGAACTATCTGTCTCGATCCAAACATGATGGAACTATCATTGCGCGAACATTTGTATGCAGCAAAGAGGGTTACCGGAAGCCTGATAGGCGTGACAAGAAGACCATCAACCCACGGGCTCCCACTAGGGTAGGTTGTATGGCAATGCTGTCGATAAAAAAGCTGAATATTGGCAAGTGGATCGTTACAAAGTTTATCAAGGAGCACAATCATGCACTAATAGCGAGCAAACGTCCAAAAGGGCTGGTTGAGGATCAAATACCGGATGATAAGAAAAAGATTGAAGAATTAAATCGAGAGCTGTTCCTTGAGAGAGAGCGATCTACTTCACTAAGAAAAGTCATAGACCTTCTATTTGAACACATTGAGGAGCATACACAAGACCTCTCAAATAAAGTCCAGCATGTTGTGGATGAAGTAAAGGAGATTGAATCGGAAGGGAAAAAACCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

243

Amino Acids

27.61

Weight (kDa)

6.67

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	84 - 171	8.9e-30	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	75, 237
AccII	CGCG	1 cut(s)	319
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	4 cut(s)	172, 285, 461, 534
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	3 cut(s)	12, 126, 211
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	67, 265, 557, 632, 704
AluBI	AGCT	3 cut(s)	29, 436, 574
AluI	AGCT	3 cut(s)	29, 436, 574
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	2 cut(s)	43, 291
AlwI	GGATC	4 cut(s)	172, 285, 461, 534
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
AspLEI	GCGC	1 cut(s)	319
BaeI	ACNNNNGTAYC	2 cut(s)	201, 234
BanII	GRGCYC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	4 cut(s)	74, 155, 296, 386
BcgI	CGANNNNNNTGC	4 cut(s)	405, 436, 439, 470
BcoDI	GTCTC	2 cut(s)	43, 291
BfaI	CTAG	1 cut(s)	399
BglI	GCCNNNNNGGC	1 cut(s)	361
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	393
BmsI	GCATC	2 cut(s)	46, 211
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	141, 602
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	386
BsaWI	WCCGGW	2 cut(s)	348, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	2 cut(s)	312, 423
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	2 cut(s)	544, 691
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	2 cut(s)	312, 423
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	2 cut(s)	349, 536
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	43, 291
Bso31I	GGTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	394, 480
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	5 cut(s)	164, 290, 453, 526, 593
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	319
BspHI	TCATGA	2 cut(s)	31, 725
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	4 cut(s)	172, 285, 461, 534
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	2 cut(s)	312, 423
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	5 cut(s)	164, 290, 453, 526, 593
Bst4CI	ACNGT	1 cut(s)	723
Bst6I	CTCTTC	2 cut(s)	108, 157
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	251, 499
BstDEI	CTNAG	2 cut(s)	60, 605
BstDSI	CCRYGG	1 cut(s)	386
BstEII	GGTNACC	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	544, 691
BstFNI	CGCG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	5 cut(s)	167, 293, 456, 529, 596
BstMAI	GTCTC	2 cut(s)	43, 291
BstMBI	GATC	5 cut(s)	164, 290, 453, 526, 593
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 494
BstNSI	RCATGY	1 cut(s)	680
BstPI	GGTNACC	1 cut(s)	344
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	544, 691
Cac8I	GCNNGC	2 cut(s)	251, 499
CciI	TCATGA	2 cut(s)	31, 725
CfoI	GCGC	1 cut(s)	319
Csp6I	GTAC	3 cut(s)	11, 125, 210
CviAII	CATG	6 cut(s)	32, 139, 299, 485, 677, 726
CviQI	GTAC	3 cut(s)	11, 125, 210
DdeI	CTNAG	2 cut(s)	60, 605
DpnI	GATC	5 cut(s)	166, 292, 455, 528, 595
DpnII	GATC	5 cut(s)	164, 290, 453, 526, 593
Eam1104I	CTCTTC	2 cut(s)	108, 157
EarI	CTCTTC	2 cut(s)	108, 157
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	6 cut(s)	35, 142, 302, 488, 680, 729
FatI	CATG	6 cut(s)	31, 138, 298, 484, 676, 725
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	2 cut(s)	551, 698
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	153
HapII	CCGG	2 cut(s)	349, 536
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	6 cut(s)	35, 142, 302, 488, 680, 729
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	2 cut(s)	142, 704
HpaII	CCGG	2 cut(s)	349, 536
Hpy188I	TCNGA	2 cut(s)	108, 709
Hpy188III	TCNNGA	6 cut(s)	32, 158, 200, 288, 569, 726
HpyAV	CCTTC	2 cut(s)	632, 704
HpyCH4III	ACNGT	1 cut(s)	723
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	3 cut(s)	224, 333, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 494
HpyF3I	CTNAG	2 cut(s)	60, 605
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	6 cut(s)	35, 142, 302, 488, 680, 729
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	5 cut(s)	164, 290, 453, 526, 593
LmnI	GCTCC	3 cut(s)	397, 475, 643
LpnPI	CCDG	8 cut(s)	183, 185, 212, 362, 369, 503, 549, 686
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	46, 211
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	3 cut(s)	344, 365, 457
MalI	GATC	5 cut(s)	166, 292, 455, 528, 595
MboI	GATC	5 cut(s)	164, 290, 453, 526, 593
MboII	GAAGA	5 cut(s)	95, 121, 144, 385, 569
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	394, 480
MluCI	AATT	2 cut(s)	203, 560
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	6 cut(s)	28, 58, 334, 517, 634, 668
MseI	TTAA	1 cut(s)	563
MslI	CAYNNNNRTG	2 cut(s)	328, 483
MspI	CCGG	2 cut(s)	349, 536
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	361, 494
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	5 cut(s)	164, 290, 453, 526, 593
NlaIII	CATG	6 cut(s)	35, 142, 302, 488, 680, 729
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	680
PagI	TCATGA	2 cut(s)	31, 725
PfeI	GAWTC	1 cut(s)	704
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PsiI	TTATAA	2 cut(s)	75, 237
PspEI	GGTNACC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	3 cut(s)	12, 126, 211
RsaNI	GTAC	3 cut(s)	11, 125, 210
RseI	CAYNNNNRTG	2 cut(s)	328, 483
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	5 cut(s)	164, 290, 453, 526, 593
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	2 cut(s)	394, 480
SetI	ASST	8 cut(s)	31, 39, 409, 438, 508, 576, 624, 660
SfaNI	GCATC	2 cut(s)	46, 211
SmiMI	CAYNNNNRTG	2 cut(s)	328, 483
SmlI	CTYRAG	2 cut(s)	156, 581
SmoI	CTYRAG	2 cut(s)	156, 581
Sse9I	AATT	2 cut(s)	203, 560
SsiI	CCGC	1 cut(s)	86
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	723
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	4 cut(s)	174, 289, 425, 568
TasI	AATT	2 cut(s)	203, 560
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	290, 702
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	680
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.