pycom13g28120

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001037
Physical Location & Seq
Forward (+)
24100544 .. 24106363
5820 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28120.1

Sequence Viewer

Length: 702 bp
ATGGAACTTAGTAGAGCTGGTGATGAAAATGAAACAGGCGGTAGTTCTGTTGAAGGGGCATTCCAACTGGGTCTGGATGATAAAATAAATCTAGATTCTCCTCAAGGGGATATAATTCCAGAAGCAGTTCCTGTAGTATCGGTAGTGCCAGCAGATGAGCCATATGAGGGTCTAGAGTTTGAAACAGAAGCAGCTGCTCATGCATTTTATAATGCATATGCCACACGTGTGGGATTCATAATTCGTGTAAGTAAACTCTCTCGATCAAGGCGTGATGGATCTGCCATTGGTCGTGCACTTGTTTGTAACAAAGAGGGTTATAGAATGCCTGACAAACGTGAAAAAGTTGTAAGGCAAAGAGCTGAGACCAGGGTTGGTTGCAGAGCAATGATTTTGGTGAGGAAAGTAAGTTCTGGGAACTGGGTTGTCACAAAATTTGTAAAGGAGCACAGTCATCCTTTGACACCTGGAAAAGGTCGAAGGGATTGCATTTATGATCAATATCCGAATGAGCATGACAAGATTCGGGAATTGTCTCAGCAGTTGGCCATAGAGAAAAAACGTGCTGCAACATATAAAAGACATCTCGACCTAATATTTGAGCACATTGAAGAACACAATGAGAACCTATCAAAAAAGATCCAACACGTAGTAGAGAGTGTGAAGGAGATTGAAGGCAAAGAACAGCAAGGATACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

234

Amino Acids

26.39

Weight (kDa)

7.1

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 69 - 155 4.5e-30 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AciI CCGC 1 cut(s) 39
AclWI GGATC 2 cut(s) 286, 634
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 1 cut(s) 434
AcvI CACGTG 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 167, 473
AflIII ACRYGT 3 cut(s) 224, 226, 646
AgsI TTSAA 4 cut(s) 53, 182, 611, 674
AjnI CCWGG 2 cut(s) 368, 466
AleI CACNNNNGTG 1 cut(s) 227
AloI GAACNNNNNNTCC 2 cut(s) 394, 426
AluBI AGCT 3 cut(s) 17, 194, 362
AluI AGCT 3 cut(s) 17, 194, 362
Alw21I GWGCWC 3 cut(s) 298, 450, 606
Alw26I GTCTC 2 cut(s) 359, 540
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 2 cut(s) 286, 634
AlwNI CAGNNNCTG 1 cut(s) 131
AoxI GGCC 1 cut(s) 546
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 3 cut(s) 191, 194, 566
ApoI RAATTY 1 cut(s) 434
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
Asp700I GAANNNNTTC 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 32, 409
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 548
BbrPI CACGTG 1 cut(s) 227
Bbv12I GWGCWC 3 cut(s) 298, 450, 606
BbvI GCAGC 3 cut(s) 181, 203, 553
BccI CCATC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 468, 502
BciT130I CCWGG 2 cut(s) 370, 468
BciVI GTATCC 1 cut(s) 686
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 2 cut(s) 359, 540
BfaI CTAG 2 cut(s) 92, 173
BfmI CTRYAG 1 cut(s) 132
BfuI GTATCC 1 cut(s) 686
BisI GCNGC 3 cut(s) 192, 195, 567
BlsI GCNGC 3 cut(s) 193, 196, 568
Bme1390I CCNGG 2 cut(s) 370, 468
BmrFI CCNGG 2 cut(s) 370, 468
BmrI ACTGGG 2 cut(s) 77, 430
BmuI ACTGGG 2 cut(s) 77, 430
BpuEI CTTGAG 1 cut(s) 87
BsaAI YACGTR 2 cut(s) 227, 649
BsaBI GATNNNNATC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 473
Bse1I ACTGG 2 cut(s) 72, 425
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 2 cut(s) 370, 468
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 2 cut(s) 82, 454
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 167, 473
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 354, 551
BseNI ACTGG 2 cut(s) 72, 425
BseRI GAGGAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 3 cut(s) 181, 203, 553
BshFI GGCC 1 cut(s) 548
BsiHKAI GWGCWC 3 cut(s) 298, 450, 606
BslI CCNNNNNNNGG 2 cut(s) 167, 473
BsmAI GTCTC 2 cut(s) 359, 540
BsmI GAATGC 2 cut(s) 59, 330
BsnI GGCC 1 cut(s) 548
Bso31I GGTCTC 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 298, 450, 606
Bsp143I GATC 4 cut(s) 263, 278, 496, 639
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 2 cut(s) 355, 550
BspPI GGATC 2 cut(s) 286, 634
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 2 cut(s) 72, 425
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 4 cut(s) 263, 278, 496, 639
Bst2UI CCWGG 2 cut(s) 370, 468
Bst4CI ACNGT 1 cut(s) 452
BstBAI YACGTR 2 cut(s) 227, 649
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 3 cut(s) 8, 363, 537
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 82, 454
BstKTI GATC 4 cut(s) 266, 281, 499, 642
BstMAI GTCTC 2 cut(s) 359, 540
BstMBI GATC 4 cut(s) 263, 278, 496, 639
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 2 cut(s) 370, 468
BstSCI CCNGG 2 cut(s) 368, 466
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 3 cut(s) 181, 203, 553
BstX2I RGATCY 2 cut(s) 278, 639
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 2 cut(s) 278, 639
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 1 cut(s) 548
BtsCI GGATG 2 cut(s) 82, 454
Cac8I GCNNGC 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 131
CviAII CATG 2 cut(s) 200, 515
CviJI RGCY 5 cut(s) 17, 160, 194, 362, 548
CviKI_1 RGCY 5 cut(s) 17, 160, 194, 362, 548
DdeI CTNAG 3 cut(s) 8, 363, 537
DpnI GATC 4 cut(s) 265, 280, 498, 641
DpnII GATC 4 cut(s) 263, 278, 496, 639
EaeI YGGCCR 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 359
Eco72I CACGTG 1 cut(s) 227
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoRII CCWGG 2 cut(s) 368, 466
EcoT22I ATGCAT 2 cut(s) 205, 217
FaeI CATG 2 cut(s) 203, 518
FatI CATG 2 cut(s) 199, 514
FauNDI CATATG 2 cut(s) 163, 217
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 3 cut(s) 192, 195, 567
FokI GGATG 2 cut(s) 89, 441
Fsp4HI GCNGC 3 cut(s) 192, 195, 567
FspBI CTAG 2 cut(s) 92, 173
GluI GCNGC 3 cut(s) 192, 195, 567
HaeIII GGCC 1 cut(s) 548
Hin1II CATG 2 cut(s) 203, 518
HinfI GANTC 3 cut(s) 95, 234, 523
HphI GGTGA 2 cut(s) 32, 409
Hpy166II GTNNAC 2 cut(s) 254, 296
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 7 cut(s) 74, 92, 119, 173, 261, 527, 587
Hpy8I GTNNAC 2 cut(s) 254, 296
HpyAV CCTTC 4 cut(s) 47, 474, 658, 668
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 4 cut(s) 226, 337, 562, 648
HpyCH4V TGCA 6 cut(s) 203, 215, 296, 381, 489, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 3 cut(s) 8, 363, 537
HpySE526I ACGT 4 cut(s) 226, 337, 562, 648
Hsp92II CATG 2 cut(s) 203, 518
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 4 cut(s) 263, 278, 496, 639
LmnI GCTCC 1 cut(s) 445
Lsp1109I GCAGC 3 cut(s) 181, 203, 553
MaeI CTAG 2 cut(s) 92, 173
MaeII ACGT 4 cut(s) 226, 337, 562, 648
MaeIII GTNAC 2 cut(s) 305, 427
MalI GATC 4 cut(s) 265, 280, 498, 641
MboI GATC 4 cut(s) 263, 278, 496, 639
MboII GAAGA 1 cut(s) 623
MflI RGATCY 2 cut(s) 278, 639
MhlI GDGCHC 3 cut(s) 298, 450, 606
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 4 cut(s) 114, 240, 434, 530
MluNI TGGCCA 1 cut(s) 548
MmeI TCCRAC 2 cut(s) 88, 667
MnlI CCTC 4 cut(s) 111, 160, 307, 393
Mox20I TGGCCA 1 cut(s) 548
Mph1103I ATGCAT 2 cut(s) 205, 217
MroXI GAANNNNTTC 1 cut(s) 126
MscI TGGCCA 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 370, 468
Mva1269I GAATGC 2 cut(s) 59, 330
MvaI CCWGG 2 cut(s) 370, 468
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeI CATATG 2 cut(s) 163, 217
NdeII GATC 4 cut(s) 263, 278, 496, 639
NlaIII CATG 2 cut(s) 203, 518
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 2 cut(s) 205, 217
OliI CACNNNNGTG 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PctI GAATGC 2 cut(s) 59, 330
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 95, 234, 523
PkrI GCNGC 3 cut(s) 193, 196, 568
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
Ppu21I YACGTR 2 cut(s) 227, 649
PsiI TTATAA 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 368, 466
PspCI CACGTG 1 cut(s) 227
PspGI CCWGG 2 cut(s) 368, 466
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 2 cut(s) 278, 639
PvuII CAGCTG 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 3 cut(s) 192, 195, 567
Sau3AI GATC 4 cut(s) 263, 278, 496, 639
ScrFI CCNGG 2 cut(s) 370, 468
SduI GDGCHC 3 cut(s) 298, 450, 606
SfcI CTRYAG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 4 cut(s) 114, 240, 434, 530
SsiI CCGC 1 cut(s) 39
SspI AATATT 1 cut(s) 597
SspMI CTAG 2 cut(s) 92, 173
StyD4I CCNGG 2 cut(s) 368, 466
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 4 cut(s) 229, 340, 565, 651
TaqI TCGA 3 cut(s) 262, 478, 588
TasI AATT 4 cut(s) 114, 240, 434, 530
TfiI GAWTC 3 cut(s) 95, 234, 523
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 3 cut(s) 191, 194, 566
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 39, 45, 226
VneI GTGCAC 1 cut(s) 294
XagI CCTNNNNNAGG 1 cut(s) 471
XapI RAATTY 1 cut(s) 434
XbaI TCTAGA 2 cut(s) 91, 172
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 2 cut(s) 92, 173
Zsp2I ATGCAT 2 cut(s) 205, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.