Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Reverse (-)

203318 .. 205889

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTTTCAATACTCGTATGAACTATCTGTCTCGATCCAAACATGATGGAACTATCATTGCACGAACATTTGTATGCAGCAAAGAGGGTTACCGGAAGCCTGATAGGCGTGACAAGAAGACTGTAAACCCACGCGCTCCCACTAGGGTAGGTTGTATGGCAATGCTGTCGATAAAAAAACTGAATATCGGCAAGTGGGTTGTTACTAAGTTTATCAAGGAGCACAATCATGCATTGATAGCGAGCAAACGTCCAAAAGGGTTGATTGAGGATCAAATACCGGATGATAAGACAAAGATTGAAGAATTAACTCAAGAGCTGTTCCTTGAGAGAGAGCGTTCTGCTTCACTAAGAAAAGTCATAGACCTTCTATTTGAACACATCGAGGAACATACACAAGACCTGTCGAAGAAAGTCCAGTATGTTGTGGATAAGGTAAAGGAGATTGAATCAGAAGGGACAGACCGCCATAAGCTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

160

Amino Acids

18.7

Weight (kDa)

9.67

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	1 - 80	1.1e-25	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	466
AclWI	GGATC	2 cut(s)	30, 279
AgsI	TTSAA	4 cut(s)	10, 302, 377, 449
AluBI	AGCT	2 cut(s)	319, 475
AluI	AGCT	2 cut(s)	319, 475
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	2 cut(s)	30, 279
ApeKI	GCWGC	1 cut(s)	78
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspLEI	GCGC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	297, 347
BsaWI	WCCGGW	2 cut(s)	93, 280
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	2 cut(s)	57, 168
BseGI	GGATG	1 cut(s)	289
BseMI	GCAATG	2 cut(s)	57, 168
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	94, 281
BslFI	GGGAC	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	35, 271
BspACI	CCGC	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	135
BspPI	GGATC	2 cut(s)	30, 279
BsrDI	GCAATG	2 cut(s)	57, 168
BsrI	ACTGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	35, 271
Bst4CI	ACNGT	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	207, 350, 476
BstEII	GGTNACC	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	38, 274
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	2 cut(s)	35, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 239
BstPI	GGTNACC	1 cut(s)	89
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	137
CviAII	CATG	2 cut(s)	44, 230
CviJI	RGCY	3 cut(s)	100, 319, 475
CviKI_1	RGCY	3 cut(s)	100, 319, 475
DdeI	CTNAG	3 cut(s)	207, 350, 476
DpnI	GATC	2 cut(s)	37, 273
DpnII	GATC	2 cut(s)	35, 271
Eco91I	GGTNACC	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	89
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	2 cut(s)	47, 233
FaiI	YATR	9 cut(s)	20, 45, 76, 158, 231, 362, 393, 423, 471
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	43, 229
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	79
HapII	CCGG	2 cut(s)	94, 281
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	47, 233
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	2 cut(s)	94, 281
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	454, 479
Hpy188III	TCNNGA	2 cut(s)	33, 314
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	377, 449
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	62, 78, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 239
HpyF3I	CTNAG	3 cut(s)	207, 350, 476
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	47, 233
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	35, 271
LmnI	GCTCC	2 cut(s)	142, 220
LpnPI	CCDG	5 cut(s)	107, 114, 294, 416, 431
Lsp1109I	GCAGC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	3 cut(s)	89, 110, 202
MalI	GATC	2 cut(s)	37, 273
MboI	GATC	2 cut(s)	35, 271
MboII	GAAGA	3 cut(s)	130, 314, 421
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	305
MnlI	CCTC	3 cut(s)	79, 262, 379
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	2 cut(s)	73, 228
MspI	CCGG	2 cut(s)	94, 281
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	106, 239
NdeII	GATC	2 cut(s)	35, 271
NlaIII	CATG	2 cut(s)	47, 233
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	80
PspEI	GGTNACC	1 cut(s)	89
RseI	CAYNNNNRTG	2 cut(s)	73, 228
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	2 cut(s)	35, 271
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	7 cut(s)	154, 253, 321, 369, 405, 438, 477
SmiMI	CAYNNNNRTG	2 cut(s)	73, 228
SmlI	CTYRAG	2 cut(s)	312, 326
SmoI	CTYRAG	2 cut(s)	312, 326
Sse9I	AATT	1 cut(s)	305
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	4 cut(s)	34, 170, 384, 407
TasI	AATT	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	35
XspI	CTAG	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.