Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001037

Physical Location & Seq

Genomic Coordinates Reverse (-)

127260 .. 129813

Gene Structure 2554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00152.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGGTTGAAGCAGATGAACCCTACGTTGGTCAGGAATTTGAATCAGAAGCAGCTGCACATGCATTTTATAATGCATATGCACTGAGAGTAGGTTTCAGAACACGTGTAAACGATCTATCTCGCTCTAGGGTGGATGGGTCTGTCATTGCTCGAACATTGGTATGTAACAAGGAGGGTTACCGAGTGGCTGATAAGCGTGATAGGAAGAGTGTGAGACCTCGGGCCCCCACTCGGGTTGGTTGCAAGGCAATGATTTCAATGAAGAAACTGAGTAATGGAAACTGGGTGGTTGCAAAGTTTGTCAAGGAGCACGCCCATTCCCTGACTCCCGGAAGGAGTGAAAACGGATTGAATGATGAATCTTCAGATGAACAGATGAAAATCAAAGAATTAACGCAACAGCTGATGGTTGAGCGAAAGAGGTCGGCTTCATATAGAAAAATCATAGACCTCTTACTAAATCATATTGACGACCACACTCAACTCCTCTCCCAAAAGATCCTGCGCGTTAATGACATTCTCAAAGACATTGCATCCTCTGAAGGAAAAGGCCGTCAAAATCCACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

191

Amino Acids

21.6

Weight (kDa)

9.56

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	23 - 110	6.5e-29	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59470 AT3G59470 AT3G59470
fragaria_vesca	FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_4g10891 FvH4_6g00151 FvH4_6g00151 FvH4_6g00151 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152 FvH4_6g00152
malus_domestica	MD04G1042200.v1.1 MD04G1247800.v1.1 MD12G1262700.v1.1 MD13G1272500.v1.1
prunus_persica	Prupe.1G196400_v2.0.a1 Prupe.6G364200_v2.0.a1 Prupe.6G364300_v2.0.a1
pyrus_communis	pycom04g03710 pycom04g21850 pycom12g24140 pycom13g28120
rosa_chinensis	RchiOBHm_Chr3g0447511 RchiOBHm_Chr3g0447521 RchiOBHm_Chr4g0406521
rosa_multiflora	Rmu_co8349065.1_g000001 Rmu_sc0003550.1_g000012 Rmu_sc0006572.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351410 Rroxscaffold_6G00425730 Rroxscaffold_6G00425740
rosa_rugosa	Rorug02G0602500 Rorug02G0602600 Rorug04G0072000 Rorug04G0072000
rosa_samantha	Rh3AG002700 Rh3AG002800 Rh3BG002200 Rh3BG002300 Rh3CG002500 Rh3CG002600 Rh3DG002600 Rh3DG002700 Rh4AG139000 Rh4BG136100 Rh4DG133400
rosa_wichuraiana	Rw3G000160 Rw3G000170 Rw4G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AccII	CGCG	1 cut(s)	510
AclWI	GGATC	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	38
AcuI	CTGAAG	2 cut(s)	351, 564
AcvI	CACGTG	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	29, 234, 235
AflIII	ACRYGT	2 cut(s)	104, 106
AgsI	TTSAA	4 cut(s)	11, 44, 261, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	2 cut(s)	56, 406
AluI	AGCT	2 cut(s)	56, 406
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	496
Ama87I	CYCGRG	2 cut(s)	222, 234
AoxI	GGCC	2 cut(s)	225, 553
ApaI	GGGCCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	53, 56
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	225, 226
AsuC2I	CCSGG	1 cut(s)	333
AvaI	CYCGRG	2 cut(s)	222, 234
BaeGI	GKGCMC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	43, 65
BccI	CCATC	2 cut(s)	131, 403
BceAI	ACGGC	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	129, 571
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	1 cut(s)	333
BmeT110I	CYCGRG	2 cut(s)	222, 234
BmgT120I	GGNCC	2 cut(s)	225, 226
BmiI	GGNNCC	2 cut(s)	227, 228
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	545
BmuI	ACTGGG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 234, 235
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	3 cut(s)	147, 258, 531
Bse8I	GATNNNNATC	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	142, 536
BseJI	GATNNNNATC	1 cut(s)	383
BseLI	CCNNNNNNNGG	3 cut(s)	29, 234, 235
BseMI	GCAATG	3 cut(s)	147, 258, 531
BseMII	CTCAG	2 cut(s)	77, 263
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	43, 65
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	227, 555
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	2 cut(s)	222, 234
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	3 cut(s)	29, 234, 235
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	227, 555
Bso31I	GGTCTC	1 cut(s)	211
BsoBI	CYCGRG	2 cut(s)	222, 234
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	229, 315
Bsp143I	GATC	2 cut(s)	115, 501
BspANI	GGCC	2 cut(s)	227, 555
BspCNI	CTCAG	2 cut(s)	78, 264
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	227, 228
BspPI	GGATC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	211
BsrDI	GCAATG	3 cut(s)	147, 258, 531
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	115, 501
Bst6I	CTCTTC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	86, 272
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	142, 536
BstFNI	CGCG	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	2 cut(s)	118, 504
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	115, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	65
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	43, 65
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	227, 555
BtsCI	GGATG	2 cut(s)	142, 536
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	225, 226
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	6 cut(s)	56, 191, 227, 406, 431, 555
CviKI_1	RGCY	6 cut(s)	56, 191, 227, 406, 431, 555
DdeI	CTNAG	2 cut(s)	86, 272
DpnI	GATC	2 cut(s)	117, 503
DpnII	GATC	2 cut(s)	115, 501
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	351, 564
Eco72I	CACGTG	1 cut(s)	107
Eco88I	CYCGRG	2 cut(s)	222, 234
Eco91I	GGTNACC	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	179
EcoT22I	ATGCAT	2 cut(s)	67, 79
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	1 cut(s)	65
FaiI	YATR	9 cut(s)	63, 72, 79, 81, 166, 436, 438, 449, 468
FatI	CATG	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	2 cut(s)	149, 523
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	2 cut(s)	54, 57
FspBI	CTAG	2 cut(s)	129, 571
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	2 cut(s)	54, 57
HaeIII	GGCC	2 cut(s)	227, 555
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	3 cut(s)	44, 328, 362
HpaII	CCGG	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	4 cut(s)	49, 101, 370, 544
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	330, 539
HpyCH4IV	ACGT	2 cut(s)	27, 106
HpyCH4V	TGCA	7 cut(s)	59, 65, 77, 83, 246, 296, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	86, 272
HpySE526I	ACGT	2 cut(s)	27, 106
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	115, 501
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	5 cut(s)	20, 271, 338, 346, 518
Lsp1109I	GCAGC	2 cut(s)	43, 65
LweI	GCATC	1 cut(s)	545
MaeI	CTAG	2 cut(s)	129, 571
MaeII	ACGT	2 cut(s)	27, 106
MaeIII	GTNAC	2 cut(s)	167, 179
MalI	GATC	2 cut(s)	117, 503
MboI	GATC	2 cut(s)	115, 501
MboII	GAAGA	3 cut(s)	220, 277, 357
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	2 cut(s)	229, 315
MluCI	AATT	2 cut(s)	38, 392
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	6 cut(s)	169, 231, 417, 464, 500, 550
Mph1103I	ATGCAT	2 cut(s)	67, 79
MseI	TTAA	2 cut(s)	395, 513
MslI	CAYNNNNRTG	1 cut(s)	163
MspA1I	CMGCKG	2 cut(s)	56, 406
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	333
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	2 cut(s)	115, 501
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	2 cut(s)	227, 228
NsiI	ATGCAT	2 cut(s)	67, 79
NspI	RCATGY	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	44, 362
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	55, 58
PleI	GAGTC	1 cut(s)	322
PmaCI	CACGTG	1 cut(s)	107
PmlI	CACGTG	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	72
PspCI	CACGTG	1 cut(s)	107
PspEI	GGTNACC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	227, 228
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	225, 226
PsuI	RGATCY	1 cut(s)	501
PvuII	CAGCTG	2 cut(s)	56, 406
RseI	CAYNNNNRTG	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	395, 513
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	2 cut(s)	115, 501
Sau96I	GGNCC	2 cut(s)	225, 226
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	229, 315
SetI	ASST	9 cut(s)	9, 30, 58, 97, 109, 223, 408, 428, 456
SfaNI	GCATC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	38, 392
SspMI	CTAG	2 cut(s)	129, 571
StyD4I	CCNGG	1 cut(s)	331
TaiI	ACGT	2 cut(s)	30, 109
TaqI	TCGA	1 cut(s)	154
TasI	AATT	2 cut(s)	38, 392
TfiI	GAWTC	2 cut(s)	44, 362
Tru1I	TTAA	2 cut(s)	395, 513
Tru9I	TTAA	2 cut(s)	395, 513
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	2 cut(s)	53, 56
TspDTI	ATGAA	6 cut(s)	33, 278, 375, 387, 395, 423
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	38
XceI	RCATGY	1 cut(s)	65
XspI	CTAG	2 cut(s)	129, 571
Zsp2I	ATGCAT	2 cut(s)	67, 79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.