Rmu_sc0006572.1_g000002

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006572.1
OG0001037
Physical Location & Seq
Forward (+)
9883 .. 14361
4479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006572.1_g000002.1.cds

Sequence Viewer

Length: 1581 bp
atgaatgatgtcaatgtatctctatatgatgggcatttgattctcctgtattatgtagctttcgttaatactcaaaatggggcatcggatgacttggctgatgttgagcttagattaaataacgatgatgcaattctcggaacttctgttggggaggtctctaatattgggcaaactgagcaagtgggtcaaaattctgcaagcttggaggttgaagcagatgaaccatatgtgggtcaggaatttgaatcagaagcagctgcacatgcattttacaatgcatatgcactgagagtaggtttcagaacacgtgtaaacgatctatctcgctctagggttgatgggtctgtcattgctcgaacactggtatgtaacaaagagggttatcgagtggctgataagcgtgataggaagagtgtgagacctcggcccccaactagggttggttgcaaggcaatgatttcaatgaagaaactgagtaatggaaactgggtggttgcaaagtttgtcaaggagcacgcccattccctgactcctggaaagagtgaaaacggattgaatgatgaatcttcagatgaacagataaaaatcaaagaattaactcaacagctgatggttgagcgaaagaggtctgcttcatatagaaaaatcatagacctcctatttaatcacattgacgaccacactcaacacctctcacaaaagatcctgcgcgttaatgacattctcaaagacatcgcatcctctgaagcaaaaggccgttcgataggcactgatcagggaaaaccagtcattttcattgcaaaatttacttgtgattccctgaatttgcatatttttgcagtggattcggtacttgatataaatgttaatgaggaggtgtcaactggttcaactgataccgagttcaagcattctaatgatggtgccttggtaggcacttctcttcagaagatactttgggttgtacaaaatgatgaaagaactcaaaactcttctaaagatggatctgtagtcgaagtagatgagccatatgtgggtcaggaatttgatacagaagtaaatgcacaggcattttataatgtctatggcttgcgtatgggtttcaatactcgtatgaactatctgtctcgatccaaacatgatggaactatcattgcacgaacatttgtatgcagcaaagagggttaccggaagcctgataggcgtgacaagaagactgtaaacccacgcgctcccactagggtaggttgtatggcaatgctgtcgataaaaaaactgaatatcggcaagtgggttgttactaagtttatcaaggagcacaatcatgcattgatagcgagcaaacgtccaaaagggttgattgaggatcaaataccggatgataagacaaagattgaagaattaactggagagctgttccttgagagagagcgttctgcttcactaagaaaagtcatagaccttctatttgaacacatcgaggaacatacacaagacctgtcgaagaaagtccagtatgttgtggataaggtaaaggagattgaatcagaagggacagaccgccataagctcagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

526

Amino Acids

59.29

Weight (kDa)

6.59

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1080
AccB1I GGYRCC 1 cut(s) 926
AccII CGCG 2 cut(s) 714, 1233
AciI CCGC 1 cut(s) 1564
AclWI GGATC 4 cut(s) 700, 1015, 1128, 1377
AcsI RAATTY 5 cut(s) 193, 242, 806, 826, 1046
AcuI CTGAAG 3 cut(s) 555, 768, 932
AcvI CACGTG 1 cut(s) 311
AfaI GTAC 2 cut(s) 855, 969
AfiI CCNNNNNNNGG 4 cut(s) 233, 438, 439, 1037
AflIII ACRYGT 2 cut(s) 308, 310
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 7 cut(s) 59, 109, 204, 260, 610, 1417, 1573
AluI AGCT 7 cut(s) 59, 109, 204, 260, 610, 1417, 1573
Alw21I GWGCWC 2 cut(s) 519, 1323
Alw26I GTCTC 3 cut(s) 163, 415, 1134
AlwI GGATC 4 cut(s) 700, 1015, 1128, 1377
AoxI GGCC 2 cut(s) 428, 757
ApeKI GCWGC 3 cut(s) 257, 260, 1176
ApoI RAATTY 5 cut(s) 193, 242, 806, 826, 1046
ArsI GACNNNNNNTTYG 2 cut(s) 1454, 1486
AspLEI GCGC 2 cut(s) 714, 1235
AspS9I GGNCC 1 cut(s) 429
BaeI ACNNNNGTAYC 2 cut(s) 1044, 1077
BanI GGYRCC 1 cut(s) 926
BbrPI CACGTG 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 1223
Bbv12I GWGCWC 2 cut(s) 519, 1323
BbvI GCAGC 3 cut(s) 247, 269, 1188
BccI CCATC 6 cut(s) 23, 335, 607, 917, 998, 1139
BceAI ACGGC 1 cut(s) 744
BcgI CGANNNNNNTGC 4 cut(s) 831, 865, 1248, 1282
BciT130I CCWGG 1 cut(s) 537
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 3 cut(s) 163, 415, 1134
BfaI CTAG 3 cut(s) 333, 438, 1242
BfmI CTRYAG 1 cut(s) 1011
BglI GCCNNNNNGGC 1 cut(s) 1204
BisI GCNGC 3 cut(s) 258, 261, 1177
BlsI GCNGC 3 cut(s) 259, 262, 1178
Bme1390I CCNGG 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 2 cut(s) 431, 928
BmrFI CCNGG 1 cut(s) 537
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 3 cut(s) 92, 118, 749
BmuI ACTGGG 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 1223
BpmI CTGGAG 1 cut(s) 1431
BpuEI CTTGAG 1 cut(s) 1445
BsaAI YACGTR 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 587
BsaI GGTCTC 2 cut(s) 163, 415
BsaJI CCNNGG 2 cut(s) 425, 930
BsaWI WCCGGW 2 cut(s) 1191, 1378
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 438, 439, 1037
Bse1I ACTGG 6 cut(s) 369, 494, 788, 892, 1414, 1516
Bse3DI GCAATG 5 cut(s) 351, 462, 798, 1155, 1266
Bse8I GATNNNNATC 1 cut(s) 587
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 2 cut(s) 425, 930
BseGI GGATG 3 cut(s) 94, 740, 1387
BseJI GATNNNNATC 1 cut(s) 587
BseLI CCNNNNNNNGG 4 cut(s) 233, 438, 439, 1037
BseMI GCAATG 5 cut(s) 351, 462, 798, 1155, 1266
BseMII CTCAG 3 cut(s) 168, 281, 467
BseNI ACTGG 6 cut(s) 369, 494, 788, 892, 1414, 1516
BseRI GAGGAG 1 cut(s) 890
BseXI GCAGC 3 cut(s) 247, 269, 1188
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 2 cut(s) 714, 1233
BshFI GGCC 2 cut(s) 430, 759
BshNI GGYRCC 1 cut(s) 926
BsiHKAI GWGCWC 2 cut(s) 519, 1323
BsiSI CCGG 2 cut(s) 1192, 1379
BslFI GGGAC 1 cut(s) 1570
BslI CCNNNNNNNGG 4 cut(s) 233, 438, 439, 1037
BsmAI GTCTC 3 cut(s) 163, 415, 1134
BsmFI GGGAC 1 cut(s) 1570
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 2 cut(s) 430, 759
Bso31I GGTCTC 2 cut(s) 163, 415
Bsp1286I GDGCHC 2 cut(s) 519, 1323
Bsp1407I TGTACA 1 cut(s) 967
Bsp143I GATC 6 cut(s) 319, 705, 775, 1007, 1133, 1369
BspACI CCGC 1 cut(s) 1564
BspANI GGCC 2 cut(s) 430, 759
BspCNI CTCAG 3 cut(s) 169, 282, 468
BspFNI CGCG 2 cut(s) 714, 1233
BspLI GGNNCC 2 cut(s) 431, 928
BspPI GGATC 4 cut(s) 700, 1015, 1128, 1377
BspT107I GGYRCC 1 cut(s) 926
BspTNI GGTCTC 2 cut(s) 163, 415
BsrDI GCAATG 5 cut(s) 351, 462, 798, 1155, 1266
BsrGI TGTACA 1 cut(s) 967
BsrI ACTGG 6 cut(s) 369, 494, 788, 892, 1414, 1516
BssECI CCNNGG 2 cut(s) 425, 930
BssMI GATC 6 cut(s) 319, 705, 775, 1007, 1133, 1369
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 1 cut(s) 1222
Bst6I CTCTTC 3 cut(s) 407, 951, 1000
BstAUI TGTACA 1 cut(s) 967
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 202, 519, 1094, 1342
BstDEI CTNAG 7 cut(s) 110, 177, 290, 476, 1305, 1448, 1574
BstEII GGTNACC 1 cut(s) 1187
BstF5I GGATG 3 cut(s) 94, 740, 1387
BstFNI CGCG 2 cut(s) 714, 1233
BstHHI GCGC 2 cut(s) 714, 1235
BstKTI GATC 6 cut(s) 322, 708, 778, 1010, 1136, 1372
BstMAI GTCTC 3 cut(s) 163, 415, 1134
BstMBI GATC 6 cut(s) 319, 705, 775, 1007, 1133, 1369
BstMWI GCNNNNNNNGC 4 cut(s) 178, 266, 1204, 1337
BstNI CCWGG 1 cut(s) 537
BstNSI RCATGY 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 1187
BstSCI CCNGG 1 cut(s) 535
BstSFI CTRYAG 1 cut(s) 1011
BstUI CGCG 2 cut(s) 714, 1233
BstV1I GCAGC 3 cut(s) 247, 269, 1188
BstV2I GAAGAC 1 cut(s) 1223
BstX2I RGATCY 2 cut(s) 705, 1007
BstYI RGATCY 2 cut(s) 705, 1007
BsuRI GGCC 2 cut(s) 430, 759
BtgZI GCGATG 1 cut(s) 721
BtsCI GGATG 3 cut(s) 94, 740, 1387
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 4 cut(s) 287, 362, 771, 849
Cac8I GCNNGC 4 cut(s) 202, 519, 1094, 1342
CfoI GCGC 2 cut(s) 714, 1235
Cfr13I GGNCC 1 cut(s) 429
Csp6I GTAC 2 cut(s) 854, 968
CviAII CATG 3 cut(s) 266, 1142, 1328
CviQI GTAC 2 cut(s) 854, 968
DdeI CTNAG 7 cut(s) 110, 177, 290, 476, 1305, 1448, 1574
DpnI GATC 6 cut(s) 321, 707, 777, 1009, 1135, 1371
DpnII GATC 6 cut(s) 319, 705, 775, 1007, 1133, 1369
Eam1104I CTCTTC 3 cut(s) 407, 951, 1000
EarI CTCTTC 3 cut(s) 407, 951, 1000
Eco130I CCWWGG 1 cut(s) 930
Eco31I GGTCTC 2 cut(s) 163, 415
Eco57I CTGAAG 3 cut(s) 555, 768, 932
Eco72I CACGTG 1 cut(s) 311
Eco91I GGTNACC 1 cut(s) 1187
EcoO65I GGTNACC 1 cut(s) 1187
EcoRII CCWGG 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 930
EcoT22I ATGCAT 3 cut(s) 271, 283, 1333
ErhI CCWWGG 1 cut(s) 930
FaeI CATG 3 cut(s) 269, 1145, 1331
FaqI GGGAC 1 cut(s) 1570
FatI CATG 3 cut(s) 265, 1141, 1327
FauNDI CATATG 3 cut(s) 229, 283, 1033
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 3 cut(s) 258, 261, 1177
FokI GGATG 3 cut(s) 101, 727, 1394
Fsp4HI GCNGC 3 cut(s) 258, 261, 1177
FspBI CTAG 3 cut(s) 333, 438, 1242
GlaI GCGC 2 cut(s) 713, 1234
GluI GCNGC 3 cut(s) 258, 261, 1177
GsuI CTGGAG 1 cut(s) 1431
HaeIII GGCC 2 cut(s) 430, 759
HapII CCGG 2 cut(s) 1192, 1379
HhaI GCGC 2 cut(s) 714, 1235
Hin1II CATG 3 cut(s) 269, 1145, 1331
Hin6I GCGC 2 cut(s) 712, 1233
HinP1I GCGC 2 cut(s) 712, 1233
HincII GTYRAC 1 cut(s) 885
HindII GTYRAC 1 cut(s) 885
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 7 cut(s) 40, 248, 532, 566, 818, 848, 1547
HpaII CCGG 2 cut(s) 1192, 1379
Hpy166II GTNNAC 3 cut(s) 316, 885, 1225
Hpy188I TCNGA 9 cut(s) 88, 140, 253, 305, 574, 748, 951, 1552, 1577
Hpy188III TCNNGA 3 cut(s) 239, 1043, 1131
Hpy8I GTNNAC 3 cut(s) 316, 885, 1225
HpyAV CCTTC 2 cut(s) 1475, 1547
HpyCH4III ACNGT 1 cut(s) 1222
HpyCH4IV ACGT 2 cut(s) 310, 1348
HpyF10VI GCNNNNNNNGC 4 cut(s) 178, 266, 1204, 1337
HpyF3I CTNAG 7 cut(s) 110, 177, 290, 476, 1305, 1448, 1574
HpySE526I ACGT 2 cut(s) 310, 1348
Hsp92II CATG 3 cut(s) 269, 1145, 1331
HspAI GCGC 2 cut(s) 712, 1233
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 6 cut(s) 319, 705, 775, 1007, 1133, 1369
LmnI GCTCC 3 cut(s) 514, 1240, 1318
Lsp1109I GCAGC 3 cut(s) 247, 269, 1188
LweI GCATC 3 cut(s) 92, 118, 749
MaeI CTAG 3 cut(s) 333, 438, 1242
MaeII ACGT 2 cut(s) 310, 1348
MaeIII GTNAC 4 cut(s) 371, 1187, 1208, 1300
MalI GATC 6 cut(s) 321, 707, 777, 1009, 1135, 1371
MboI GATC 6 cut(s) 319, 705, 775, 1007, 1133, 1369
MboII GAAGA 9 cut(s) 424, 481, 561, 938, 964, 987, 1228, 1412, 1519
MflI RGATCY 2 cut(s) 705, 1007
MhlI GDGCHC 2 cut(s) 519, 1323
MluCI AATT 8 cut(s) 132, 193, 242, 596, 806, 826, 1046, 1403
MlyI GAGTC 1 cut(s) 526
Mph1103I ATGCAT 3 cut(s) 271, 283, 1333
MseI TTAA 7 cut(s) 66, 116, 599, 666, 717, 870, 1406
MslI CAYNNNNRTG 4 cut(s) 367, 918, 1171, 1326
MspA1I CMGCKG 2 cut(s) 260, 610
MspI CCGG 2 cut(s) 1192, 1379
MspR9I CCNGG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 1 cut(s) 537
MvnI CGCG 2 cut(s) 714, 1233
MwoI GCNNNNNNNGC 4 cut(s) 178, 266, 1204, 1337
NdeI CATATG 3 cut(s) 229, 283, 1033
NdeII GATC 6 cut(s) 319, 705, 775, 1007, 1133, 1369
NlaIII CATG 3 cut(s) 269, 1145, 1331
NlaIV GGNNCC 2 cut(s) 431, 928
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 1208
NsiI ATGCAT 3 cut(s) 271, 283, 1333
NspI RCATGY 1 cut(s) 269
PctI GAATGC 1 cut(s) 913
PfeI GAWTC 6 cut(s) 40, 248, 566, 818, 848, 1547
PfoI TCCNGGA 1 cut(s) 535
PkrI GCNGC 3 cut(s) 259, 262, 1178
PleI GAGTC 1 cut(s) 526
PmaCI CACGTG 1 cut(s) 311
PmlI CACGTG 1 cut(s) 311
PpsI GAGTC 1 cut(s) 526
Ppu21I YACGTR 1 cut(s) 311
PsiI TTATAA 1 cut(s) 1080
Psp6I CCWGG 1 cut(s) 535
PspCI CACGTG 1 cut(s) 311
PspEI GGTNACC 1 cut(s) 1187
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 2 cut(s) 431, 928
PspPI GGNCC 1 cut(s) 429
PsuI RGATCY 2 cut(s) 705, 1007
PvuII CAGCTG 2 cut(s) 260, 610
RsaI GTAC 2 cut(s) 855, 969
RsaNI GTAC 2 cut(s) 854, 968
RseI CAYNNNNRTG 4 cut(s) 367, 918, 1171, 1326
SaqAI TTAA 7 cut(s) 66, 116, 599, 666, 717, 870, 1406
SatI GCNGC 3 cut(s) 258, 261, 1177
Sau3AI GATC 6 cut(s) 319, 705, 775, 1007, 1133, 1369
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 2 cut(s) 519, 1323
SfaNI GCATC 3 cut(s) 92, 118, 749
SfcI CTRYAG 1 cut(s) 1011
SmiMI CAYNNNNRTG 4 cut(s) 367, 918, 1171, 1326
SmlI CTYRAG 1 cut(s) 1424
SmoI CTYRAG 1 cut(s) 1424
Sse9I AATT 8 cut(s) 132, 193, 242, 596, 806, 826, 1046, 1403
SsiI CCGC 1 cut(s) 1564
SspI AATATT 1 cut(s) 166
SspMI CTAG 3 cut(s) 333, 438, 1242
StyD4I CCNGG 1 cut(s) 535
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 1 cut(s) 1222
TaiI ACGT 2 cut(s) 313, 1351
TaqI TCGA 8 cut(s) 358, 388, 764, 1017, 1132, 1268, 1482, 1505
TasI AATT 8 cut(s) 132, 193, 242, 596, 806, 826, 1046, 1403
TatI WGTACW 1 cut(s) 967
TfiI GAWTC 6 cut(s) 40, 248, 566, 818, 848, 1547
Tru1I TTAA 7 cut(s) 66, 116, 599, 666, 717, 870, 1406
Tru9I TTAA 7 cut(s) 66, 116, 599, 666, 717, 870, 1406
TscAI CASTG 4 cut(s) 294, 369, 778, 849
TseFI GTSAC 1 cut(s) 1208
TseI GCWGC 3 cut(s) 257, 260, 1176
Tsp45I GTSAC 1 cut(s) 1208
TspDTI ATGAA 9 cut(s) 17, 237, 482, 579, 591, 627, 787, 993, 1133
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 4 cut(s) 294, 369, 778, 849
XapI RAATTY 5 cut(s) 193, 242, 806, 826, 1046
XceI RCATGY 1 cut(s) 269
XspI CTAG 3 cut(s) 333, 438, 1242
Zsp2I ATGCAT 3 cut(s) 271, 283, 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.