pycom12g24140

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0001037
Physical Location & Seq
Forward (+)
24500882 .. 24502630
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g24140.2

Sequence Viewer

Length: 924 bp
ATGACTATTAGAAAAAAAAAATGTTATAAAAACAATATTTCGGCGAGAAACTTAAAAATAAGTAGATATTTTTTATTTTTTATTTCGACGAAATATGGAAATACCAGAAAGCCTCTCCCAGTTCCCTATCGCGGAGGGCCTGAGCTTGGCGCTTTAAACAAAAGGGTTGCTGTCTGTGTGCATCTGAGCGACCACTGCCAGCATTTCGAGGGGCTTCCAAAAAATTCAATGACTCATGAATCTGATGGTGCATCGGTAGGAACTTCTCTTGTAGATATGAGTCATCTTTTTGGACAGGATGATGATGATGATGATGATCAAAGGACTCCAAATTCTTGTAAAGATGGATCAAGTCTAGTCCAACCCCATGAGCCGTATGTGGGTCAGGAATTCGACTCACAAGAAAGTGCACTGGCATTTTATAATGCCTATGCCACTCGTATGGGTTTCGTTACTCGTATGAATGATATGTATCGATCCAAACACGATGGAACCGTCATTGGGCGGACATTGGTATGCAACAAAGAGGGTTTCCGAAAGCCTGACAGGCGTGACAAGAAGACCCTAAAGCCTCGGGCTCAAACTAGGGTAGGTTGTAGGGCAATGCTGTCCATCAAGAAACTCAGTGTTGGGAAATGGGTTGTTACATGGTTCGTTAGGGAGCACACTCATGCATTGACTCCCAACAAAGCTCTAAAAGGACTGGTCAATGATCAAGTACCGGACGATAAGACAAAGATTGCAGAGTTAACTAACGAGCTCTTCCTCGAGAGAAAGCGGTCTGCTGCACTTAGAGAAATAGTTGATCTTCTATTTAATCACATTGAGGAACATACGCAAGACCTGTCGAAGAAAGTTCAGCATGTTGTTGACAATGTCAAGGAGCTTGAATCAGAAGGGAAAAACCGTCGTAGCCTAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

308

Amino Acids

34.98

Weight (kDa)

9.36

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 27, 423
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 132, 505, 778
AclWI GGATC 2 cut(s) 355, 471
AcsI RAATTY 3 cut(s) 223, 331, 389
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 4 cut(s) 131, 146, 380, 501
AgsI TTSAA 2 cut(s) 228, 890
AluBI AGCT 4 cut(s) 145, 692, 760, 886
AluI AGCT 4 cut(s) 145, 692, 760, 886
Alw21I GWGCWC 3 cut(s) 412, 666, 762
Alw44I GTGCAC 1 cut(s) 408
AlwI GGATC 2 cut(s) 355, 471
Ama87I CYCGRG 2 cut(s) 573, 767
AoxI GGCC 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 3 cut(s) 223, 331, 389
AspA2I CCTAGG 1 cut(s) 916
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 137
AvaI CYCGRG 2 cut(s) 573, 767
AvrII CCTAGG 1 cut(s) 916
BaeGI GKGCMC 1 cut(s) 412
BanII GRGCYC 2 cut(s) 580, 762
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 3 cut(s) 412, 666, 762
BbvI GCAGC 1 cut(s) 772
BccI CCATC 4 cut(s) 239, 338, 482, 620
BceAI ACGGC 1 cut(s) 358
BclI TGATCA 2 cut(s) 316, 712
BfaI CTAG 3 cut(s) 356, 585, 917
BfoI RGCGCY 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 547
BisI GCNGC 1 cut(s) 786
BlnI CCTAGG 1 cut(s) 916
BlsI GCNGC 1 cut(s) 787
BmeT110I CYCGRG 2 cut(s) 573, 767
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 493
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 190, 260
BmuI ACTGGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 566
Bpu10I CCTNAGC 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 475
BsaBI GATNNNNATC 2 cut(s) 315, 471
BsaJI CCNNGG 2 cut(s) 572, 916
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 146, 380, 501
Bse1I ACTGG 3 cut(s) 119, 417, 708
Bse3DI GCAATG 1 cut(s) 609
Bse8I GATNNNNATC 2 cut(s) 315, 471
BseCI ATCGAT 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 572, 916
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 2 cut(s) 315, 471
BseLI CCNNNNNNNGG 4 cut(s) 131, 146, 380, 501
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 3 cut(s) 132, 176, 637
BseNI ACTGG 3 cut(s) 119, 417, 708
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 1 cut(s) 772
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 139
BshVI ATCGAT 1 cut(s) 475
BsiHKAI GWGCWC 3 cut(s) 412, 666, 762
BsiHKCI CYCGRG 2 cut(s) 573, 767
BsiSI CCGG 1 cut(s) 722
BslI CCNNNNNNNGG 4 cut(s) 131, 146, 380, 501
BsnI GGCC 1 cut(s) 139
BsoBI CYCGRG 2 cut(s) 573, 767
Bsp1286I GDGCHC 4 cut(s) 412, 580, 666, 762
Bsp143I GATC 5 cut(s) 316, 347, 476, 712, 805
BspACI CCGC 3 cut(s) 132, 505, 778
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 3 cut(s) 133, 177, 636
BspDI ATCGAT 1 cut(s) 475
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 493
BspPI GGATC 2 cut(s) 355, 471
BspQI GCTCTTC 1 cut(s) 767
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 3 cut(s) 119, 417, 708
BssECI CCNNGG 2 cut(s) 572, 916
BssMI GATC 5 cut(s) 316, 347, 476, 712, 805
BssT1I CCWWGG 1 cut(s) 916
Bst4CI ACNGT 2 cut(s) 496, 908
Bst6I CTCTTC 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 4 cut(s) 141, 185, 623, 791
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 5 cut(s) 319, 350, 479, 715, 808
BstMBI GATC 5 cut(s) 316, 347, 476, 712, 805
BstMWI GCNNNNNNNGC 2 cut(s) 195, 547
BstNSI RCATGY 1 cut(s) 866
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 772
BstV2I GAAGAC 1 cut(s) 566
BstXI CCANNNNNNTGG 1 cut(s) 442
Bsu15I ATCGAT 1 cut(s) 475
BsuRI GGCC 1 cut(s) 139
BsuTUI ATCGAT 1 cut(s) 475
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 3 cut(s) 193, 410, 631
Cac8I GCNNGC 1 cut(s) 200
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 475
Csp6I GTAC 1 cut(s) 719
CviAII CATG 5 cut(s) 236, 368, 648, 671, 863
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 4 cut(s) 141, 185, 623, 791
DpnI GATC 5 cut(s) 318, 349, 478, 714, 807
DpnII GATC 5 cut(s) 316, 347, 476, 712, 805
DraI TTTAAA 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 767
EarI CTCTTC 1 cut(s) 767
EciI GGCGGA 1 cut(s) 520
Ecl136II GAGCTC 1 cut(s) 760
Eco130I CCWWGG 1 cut(s) 916
Eco24I GRGCYC 2 cut(s) 580, 762
Eco53kI GAGCTC 1 cut(s) 760
Eco88I CYCGRG 2 cut(s) 573, 767
EcoICRI GAGCTC 1 cut(s) 760
EcoO109I RGGNCCY 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 916
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 580, 762
ErhI CCWWGG 1 cut(s) 916
FaeI CATG 5 cut(s) 239, 371, 651, 674, 866
FatI CATG 5 cut(s) 235, 367, 647, 670, 862
FbaI TGATCA 2 cut(s) 316, 712
Fnu4HI GCNGC 1 cut(s) 786
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 2 cut(s) 580, 762
Fsp4HI GCNGC 1 cut(s) 786
FspBI CTAG 3 cut(s) 356, 585, 917
GlaI GCGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 786
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 1 cut(s) 139
HapII CCGG 1 cut(s) 722
HhaI GCGC 1 cut(s) 152
Hin1II CATG 5 cut(s) 239, 371, 651, 674, 866
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 2 cut(s) 750, 871
HindII GTYRAC 2 cut(s) 750, 871
HinfI GANTC 7 cut(s) 232, 239, 280, 325, 395, 679, 890
HpaI GTTAAC 1 cut(s) 750
HpaII CCGG 1 cut(s) 722
Hpy166II GTNNAC 3 cut(s) 410, 750, 871
Hpy188I TCNGA 4 cut(s) 186, 244, 536, 895
Hpy188III TCNNGA 4 cut(s) 236, 386, 616, 769
Hpy8I GTNNAC 3 cut(s) 410, 750, 871
Hpy99I CGWCG 2 cut(s) 91, 912
HpyAV CCTTC 1 cut(s) 890
HpyCH4III ACNGT 2 cut(s) 496, 908
HpyCH4V TGCA 7 cut(s) 181, 251, 410, 519, 674, 743, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 547
HpyF3I CTNAG 4 cut(s) 141, 185, 623, 791
Hsp92II CATG 5 cut(s) 239, 371, 651, 674, 866
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 2 cut(s) 316, 712
KspAI GTTAAC 1 cut(s) 750
Kzo9I GATC 5 cut(s) 316, 347, 476, 712, 805
LguI GCTCTTC 1 cut(s) 767
LmnI GCTCC 2 cut(s) 661, 883
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 2 cut(s) 190, 260
MaeI CTAG 3 cut(s) 356, 585, 917
MaeIII GTNAC 3 cut(s) 451, 551, 643
MalI GATC 5 cut(s) 318, 349, 478, 714, 807
MboI GATC 5 cut(s) 316, 347, 476, 712, 805
MboII GAAGA 4 cut(s) 571, 754, 800, 862
MhlI GDGCHC 4 cut(s) 412, 580, 666, 762
MluCI AATT 3 cut(s) 223, 331, 389
MlyI GAGTC 5 cut(s) 226, 289, 319, 389, 673
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 7 cut(s) 123, 128, 202, 520, 582, 776, 820
Mph1103I ATGCAT 1 cut(s) 676
MseI TTAA 4 cut(s) 53, 155, 749, 816
MslI CAYNNNNRTG 3 cut(s) 440, 514, 669
MspI CCGG 1 cut(s) 722
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 195, 547
NdeII GATC 5 cut(s) 316, 347, 476, 712, 805
NlaIII CATG 5 cut(s) 239, 371, 651, 674, 866
NlaIV GGNNCC 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 551
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 866
PaeR7I CTCGAG 1 cut(s) 767
PagI TCATGA 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 767
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PfeI GAWTC 2 cut(s) 239, 890
PflFI GACNNNGTC 1 cut(s) 875
PkrI GCNGC 1 cut(s) 787
PleI GAGTC 5 cut(s) 226, 288, 319, 389, 673
PpsI GAGTC 5 cut(s) 226, 288, 319, 389, 673
PsiI TTATAA 2 cut(s) 27, 423
Psp124BI GAGCTC 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 1 cut(s) 137
PsyI GACNNNGTC 1 cut(s) 875
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
RseI CAYNNNNRTG 3 cut(s) 440, 514, 669
SacI GAGCTC 1 cut(s) 762
SapI GCTCTTC 1 cut(s) 767
SaqAI TTAA 4 cut(s) 53, 155, 749, 816
SatI GCNGC 1 cut(s) 786
Sau3AI GATC 5 cut(s) 316, 347, 476, 712, 805
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 5 cut(s) 226, 289, 319, 389, 673
SduI GDGCHC 4 cut(s) 412, 580, 666, 762
SetI ASST 6 cut(s) 147, 595, 694, 762, 846, 888
SfaNI GCATC 2 cut(s) 190, 260
Sfr274I CTCGAG 1 cut(s) 767
SlaI CTCGAG 1 cut(s) 767
SmiMI CAYNNNNRTG 3 cut(s) 440, 514, 669
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
Sse9I AATT 3 cut(s) 223, 331, 389
SsiI CCGC 3 cut(s) 132, 505, 778
SspI AATATT 1 cut(s) 37
SspMI CTAG 3 cut(s) 356, 585, 917
SstI GAGCTC 1 cut(s) 762
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 2 cut(s) 496, 908
TaqI TCGA 6 cut(s) 86, 207, 393, 475, 768, 848
TasI AATT 3 cut(s) 223, 331, 389
TfiI GAWTC 2 cut(s) 239, 890
Tru1I TTAA 4 cut(s) 53, 155, 749, 816
Tru9I TTAA 4 cut(s) 53, 155, 749, 816
TscAI CASTG 3 cut(s) 200, 417, 631
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 1 cut(s) 785
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 2 cut(s) 252, 476
TspRI CASTG 3 cut(s) 200, 417, 631
Tth111I GACNNNGTC 1 cut(s) 875
VneI GTGCAC 1 cut(s) 408
XapI RAATTY 3 cut(s) 223, 331, 389
XceI RCATGY 1 cut(s) 866
XhoI CTCGAG 1 cut(s) 767
XmaJI CCTAGG 1 cut(s) 916
XspI CTAG 3 cut(s) 356, 585, 917
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.