Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004298

Physical Location & Seq

Genomic Coordinates Reverse (-)

3303825 .. 3305751

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATGATTTGAATGGGACAGTCGAAACTTCTGCAGAAGGGGAATCAAACAATATTGAAGTTGGCCCATGTCAAGAACCATATGAGGGTATGCTTTTTGAATCAGAAGAAGCTGCCAAAGTATTCTATGATGATTATGCCAGGCGTGTTGGATTTGTGACCCGTGTTTTGTCATCCCGGAAGTCTGAGCGTGATGGGTCAATAATCTCTCGTGGACTTGGATGCAGAGGGATCTCTGAGAATCGTAGAAAAGTAATGCAGAAGGAGTTTGGAGAACAAGAAGCTTGTCCGGCCATGGTCTTGTTGAAACAAGAGATGCCTGGAAGATGGGTTATCAAGAAATTTTTGGGGGACCATAATCATCTGTTAGTGATTCAATCACCAAAGATCCGCAAAACACTTGATGAGAAGGATAAGAAAATCCAGGAGTTATCTGCAGAGCTACGAGTTAAGAAGCGGTTAAGTGCAGCATATAGAGATCAGCTACTCGCCTTTATCAAGGATATTGAAGACCACAACGCGCACCTTTCAACAAAAGTTCAATCGGTTTCTAACAAGATAAAAGAGCTTGAAGCTAAAACGGGTGCTTTAACGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

200

Amino Acids

22.57

Weight (kDa)

8.35

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43280 AT2G43280
fragaria_vesca	FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892
malus_domestica	MD04G1042000.v1.1 MD04G1042100.v1.1
prunus_persica	Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1
pyrus_communis	pycom04g03700
rosa_chinensis	RchiOBHm_Chr4g0406491
rosa_multiflora	Rmu_ssc0000186.1_g000028
rosa_roxburghii	Rroxscaffold_5G00351400
rosa_rugosa	Rorug04G0072000
rosa_samantha	Rh4AG138900 Rh4BG135900 Rh4CG146200 Rh4DG133300
rosa_wichuraiana	Rw4G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	521, 595
AciI	CCGC	2 cut(s)	391, 457
AclWI	GGATC	2 cut(s)	239, 382
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	9 cut(s)	13, 59, 101, 307, 377, 509, 531, 542, 572
AjnI	CCWGG	3 cut(s)	140, 319, 423
AluBI	AGCT	6 cut(s)	113, 284, 442, 484, 568, 575
AluI	AGCT	6 cut(s)	113, 284, 442, 484, 568, 575
AlwI	GGATC	2 cut(s)	239, 382
AoxI	GGCC	2 cut(s)	64, 291
ApeKI	GCWGC	2 cut(s)	113, 467
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	2 cut(s)	65, 352
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	352
BauI	CACGAG	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	100, 479
BccI	CCATC	2 cut(s)	188, 321
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	3 cut(s)	142, 321, 425
BcnI	CCSGG	1 cut(s)	178
BfmI	CTRYAG	2 cut(s)	33, 435
BisI	GCNGC	2 cut(s)	114, 468
BlsI	GCNGC	2 cut(s)	115, 469
Bme1390I	CCNGG	4 cut(s)	142, 178, 321, 425
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	65, 352
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	4 cut(s)	142, 178, 321, 425
BmsI	GCATC	2 cut(s)	212, 306
BpiI	GAAGAC	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
BseBI	CCWGG	3 cut(s)	142, 321, 425
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	3 cut(s)	10, 173, 227
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	177, 228
BseXI	GCAGC	2 cut(s)	100, 479
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	2 cut(s)	521, 595
BshFI	GGCC	2 cut(s)	66, 293
BsiSI	CCGG	2 cut(s)	178, 290
BslFI	GGGAC	2 cut(s)	31, 365
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmFI	GGGAC	2 cut(s)	31, 365
BsnI	GGCC	2 cut(s)	66, 293
Bsp143I	GATC	3 cut(s)	231, 387, 478
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	2 cut(s)	391, 457
BspANI	GGCC	2 cut(s)	66, 293
BspCNI	CTCAG	2 cut(s)	178, 229
BspFNI	CGCG	2 cut(s)	521, 595
BspLI	GGNNCC	1 cut(s)	353
BspMAI	CTGCAG	2 cut(s)	37, 439
BspPI	GGATC	2 cut(s)	239, 382
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	3 cut(s)	231, 387, 478
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	3 cut(s)	142, 321, 425
Bst4CI	ACNGT	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	186, 237
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	3 cut(s)	10, 173, 227
BstFNI	CGCG	2 cut(s)	521, 595
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	3 cut(s)	234, 390, 481
BstMBI	GATC	3 cut(s)	231, 387, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	3 cut(s)	142, 321, 425
BstSCI	CCNGG	4 cut(s)	140, 176, 319, 423
BstSFI	CTRYAG	2 cut(s)	33, 435
BstUI	CGCG	2 cut(s)	521, 595
BstV1I	GCAGC	2 cut(s)	100, 479
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	231, 387
BstYI	RGATCY	2 cut(s)	231, 387
BsuRI	GGCC	2 cut(s)	66, 293
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	10, 173, 227
CfoI	GCGC	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	65, 352
CviAII	CATG	2 cut(s)	69, 295
CviJI	RGCY	8 cut(s)	66, 113, 284, 293, 442, 484, 568, 575
CviKI_1	RGCY	8 cut(s)	66, 113, 284, 293, 442, 484, 568, 575
DdeI	CTNAG	2 cut(s)	186, 237
DpnI	GATC	3 cut(s)	233, 389, 480
DpnII	GATC	3 cut(s)	231, 387, 478
EaeI	YGGCCR	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	352
EcoRII	CCWGG	3 cut(s)	140, 319, 423
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	72, 298
FaqI	GGGAC	2 cut(s)	31, 365
FatI	CATG	2 cut(s)	68, 294
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	114, 468
FokI	GGATG	3 cut(s)	17, 160, 234
Fsp4HI	GCNGC	2 cut(s)	114, 468
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	2 cut(s)	114, 468
HaeIII	GGCC	2 cut(s)	66, 293
HapII	CCGG	2 cut(s)	178, 290
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	2 cut(s)	72, 298
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	4 cut(s)	44, 101, 241, 373
HpaII	CCGG	2 cut(s)	178, 290
HphI	GGTGA	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	106, 187, 238
Hpy188III	TCNNGA	2 cut(s)	74, 337
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	32, 256, 403
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	5 cut(s)	35, 225, 259, 437, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	186, 237
Hsp92II	CATG	2 cut(s)	72, 298
HspAI	GCGC	1 cut(s)	521
Kzo9I	GATC	3 cut(s)	231, 387, 478
LpnPI	CCDG	8 cut(s)	127, 154, 191, 303, 306, 333, 410, 437
Lsp1109I	GCAGC	2 cut(s)	100, 479
LweI	GCATC	2 cut(s)	212, 306
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	3 cut(s)	233, 389, 480
MboI	GATC	3 cut(s)	231, 387, 478
MboII	GAAGA	3 cut(s)	119, 336, 521
MflI	RGATCY	2 cut(s)	231, 387
MluCI	AATT	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	2 cut(s)	79, 221
MseI	TTAA	3 cut(s)	450, 461, 590
MspI	CCGG	2 cut(s)	178, 290
MspR9I	CCNGG	4 cut(s)	142, 178, 321, 425
MvaI	CCWGG	3 cut(s)	142, 321, 425
MvnI	CGCG	2 cut(s)	521, 595
MwoI	GCNNNNNNNGC	1 cut(s)	290
NciI	CCSGG	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	294
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	3 cut(s)	231, 387, 478
NlaIII	CATG	2 cut(s)	72, 298
NlaIV	GGNNCC	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	157
PfeI	GAWTC	4 cut(s)	44, 101, 241, 373
PfoI	TCCNGGA	2 cut(s)	176, 423
PkrI	GCNGC	2 cut(s)	115, 469
Psp6I	CCWGG	3 cut(s)	140, 319, 423
PspGI	CCWGG	3 cut(s)	140, 319, 423
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	2 cut(s)	65, 352
PstI	CTGCAG	2 cut(s)	37, 439
PsuI	RGATCY	2 cut(s)	231, 387
SaqAI	TTAA	3 cut(s)	450, 461, 590
SatI	GCNGC	2 cut(s)	114, 468
Sau3AI	GATC	3 cut(s)	231, 387, 478
Sau96I	GGNCC	2 cut(s)	65, 352
ScrFI	CCNGG	4 cut(s)	142, 178, 321, 425
SetI	ASST	7 cut(s)	115, 286, 444, 486, 528, 570, 577
SfaNI	GCATC	2 cut(s)	212, 306
SfcI	CTRYAG	2 cut(s)	33, 435
SinI	GGWCC	1 cut(s)	352
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	2 cut(s)	391, 457
SspI	AATATT	1 cut(s)	55
StyD4I	CCNGG	4 cut(s)	140, 176, 319, 423
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	341
TfiI	GAWTC	4 cut(s)	44, 101, 241, 373
Tru1I	TTAA	3 cut(s)	450, 461, 590
Tru9I	TTAA	3 cut(s)	450, 461, 590
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	113, 467
Tsp45I	GTSAC	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.