Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015317

Physical Location & Seq

Genomic Coordinates Reverse (-)

18010676 .. 18013252

Gene Structure 2577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGATGCTTGTTCGATCTGTATTTCGATCTCAGTTGCGACCCTCTGTCTCGGGTGGTCTGCAATCTGCTTCTTGCTATTCTTCATTATCTGCTGCTTCAGCTGAAGCTGAGAGGACTATCAGAGAAGGTCCCAGAAACGATTGGAGTAGAGATGAAATCAAGTCTGTTTATGATTCTCCTCTTCTTGACCTCCTCTTCCATGGAGCTCAGGTTCATAGACATGTTCATAACTTCAGGGAGGTACAACAATGTACCCTCCTCTCCATAAAGACTGGTGGCTGTAGTGAAGACTGTTCATATTGTCCTCAGTCTTCGAGATATAGCACTGGAGTTAAGGCACAAAGACTCATGTCTAAGGACGCTGTCATTGATGCTGCTAAGAAGGCAAAAGAAGCTGGGAGCACACGTTTTTGCATGGGTGCTGCTTGGCGAGATACAATTGGACGGAAAACCAACTTCAGCCAGATTCTTGAATACATCAAAGAAATAAGAGGCATGGGGATGGAAGTTTGCTGCACCTTAGGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAGGCTGGCCTCACTGCTTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTCATCACTACTAGAAGTTATGACGATCGCCTTGAAACTCTTAGCCATGTTCGTGATGCTGGAATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGTGAGGCAGAGGAAGACAGAATAGGTTTATTACACACGCTGGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAATGCTCTACTTGCAGTGAAAGGCACTCCTCTTGAAGACCAGAAGCCAGTTGAGATATGGGAGATGATCAGGATGATTGGAACCGCACGTATTGTAATGCCAAAAGCGATGGTGAGACTGTCTGCTGGTAGAGTCCGGTTCTCAATGTCCGAACAAGCTCTCTGTTTCCTTGCTGGTGCAAACTCTATCTTCACCGGAGAGAAGCTTTTAACCACACCAAACAATGATTTTGACGCTGACCAGCTCATGTTCAAGACATTAGGCCTCATTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAGAAAACTGCGAGAAAGTTGCTTCCGCTTCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BATS Radical_SAM

Protein Analysis

378

Amino Acids

41.68

Weight (kDa)

6.52

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Radical_SAM	PF04055	89 - 250	2.9e-22	Radical SAM superfamily
BATS	PF06968	263 - 353	2e-26	Biotin and Thiamin Synthesis associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43360
fragaria_vesca	FvH4_4g11460 FvH4_4g11460
malus_domestica	MD04G1037300.v1.1
prunus_persica	Prupe.1G186700_v2.0.a1
pyrus_communis	pycom04g03040
rosa_chinensis	RchiOBHm_Chr4g0408131
rosa_laevigata	RLG00000008670 RLG00000008673
rosa_multiflora	Rmu_sc0002073.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352620
rosa_rugosa	Rorug04G0083700
rosa_samantha	Rh4AG148100 Rh4BG145300 Rh4DG141800
rosa_wichuraiana	Rw4G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AciI	CCGC	3 cut(s)	876, 1070, 1125
AclI	AACGTT	1 cut(s)	687
AcuI	CTGAAG	5 cut(s)	81, 123, 217, 442, 1104
AfaI	GTAC	3 cut(s)	243, 253, 608
AflIII	ACRYGT	2 cut(s)	220, 404
AgsI	TTSAA	5 cut(s)	473, 600, 653, 827, 1045
AhdI	GACNNNNNGTC	1 cut(s)	44
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	8 cut(s)	101, 107, 206, 395, 553, 950, 997, 1036
AluI	AGCT	8 cut(s)	101, 107, 206, 395, 553, 950, 997, 1036
Alw21I	GWGCWC	2 cut(s)	208, 404
Alw26I	GTCTC	2 cut(s)	52, 901
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	2 cut(s)	565, 1054
ApeKI	GCWGC	4 cut(s)	92, 374, 422, 513
AseI	ATTAAT	1 cut(s)	792
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	4 cut(s)	728, 764, 916, 976
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	128
AxyI	CCTNAGG	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	4 cut(s)	294, 303, 735, 834
Bbv12I	GWGCWC	2 cut(s)	208, 404
BbvI	GCAGC	4 cut(s)	79, 361, 409, 500
BccI	CCATC	2 cut(s)	496, 895
BcgI	CGANNNNNNTGC	2 cut(s)	1100, 1134
BclI	TGATCA	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	52, 901
BfaI	CTAG	2 cut(s)	548, 630
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	4 cut(s)	93, 375, 423, 514
BlsI	GCNGC	4 cut(s)	94, 376, 424, 515
BmcAI	AGTACT	1 cut(s)	608
Bme18I	GGWCC	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	130, 874
BmsI	GCATC	2 cut(s)	361, 664
BoxI	GACNNNNGTC	1 cut(s)	349
BpiI	GAAGAC	4 cut(s)	294, 303, 735, 834
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	881
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	2 cut(s)	927, 986
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 225, 391, 421
Bse1I	ACTGG	3 cut(s)	277, 331, 839
Bse21I	CCTNAGG	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	507, 870
BseMII	CTCAG	5 cut(s)	44, 99, 221, 320, 768
BseNI	ACTGG	3 cut(s)	277, 331, 839
BseRI	GAGGAG	4 cut(s)	168, 182, 248, 810
BseXI	GCAGC	4 cut(s)	79, 361, 409, 500
BseYI	CCCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	499
Bsh1285I	CGRYCG	1 cut(s)	646
BshFI	GGCC	2 cut(s)	567, 1056
BsiEI	CGRYCG	1 cut(s)	646
BsiHKAI	GWGCWC	2 cut(s)	208, 404
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	928, 987
BslFI	GGGAC	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	52, 901
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	567, 1056
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	208, 404
Bsp143I	GATC	4 cut(s)	14, 26, 643, 858
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	3 cut(s)	876, 1070, 1125
BspANI	GGCC	2 cut(s)	567, 1056
BspCNI	CTCAG	5 cut(s)	43, 100, 220, 319, 769
BspLI	GGNNCC	2 cut(s)	130, 874
BsrI	ACTGG	3 cut(s)	277, 331, 839
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	4 cut(s)	14, 26, 643, 858
BssT1I	CCWWGG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	293, 912
Bst6I	CTCTTC	2 cut(s)	186, 200
BstBAI	YACGTR	1 cut(s)	881
BstC8I	GCNNGC	2 cut(s)	565, 756
BstDEI	CTNAG	9 cut(s)	30, 108, 207, 306, 354, 378, 520, 659, 777
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	507, 870
BstKTI	GATC	4 cut(s)	17, 29, 646, 861
BstMAI	GTCTC	2 cut(s)	52, 901
BstMBI	GATC	4 cut(s)	14, 26, 643, 858
BstMCI	CGRYCG	1 cut(s)	646
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 383, 392, 522, 803
BstNSI	RCATGY	1 cut(s)	224
BstPAI	GACNNNNGTC	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	4 cut(s)	79, 361, 409, 500
BstV2I	GAAGAC	4 cut(s)	294, 303, 735, 834
Bsu36I	CCTNAGG	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	567, 1056
BtgI	CCRYGG	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	914
BtsCI	GGATG	2 cut(s)	507, 870
BtsI	GCAGTG	2 cut(s)	570, 813
BtsIMutI	CAGTG	3 cut(s)	324, 570, 813
Cac8I	GCNNGC	2 cut(s)	565, 756
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	2 cut(s)	368, 1034
Csp6I	GTAC	3 cut(s)	242, 252, 607
CviAII	CATG	8 cut(s)	200, 221, 349, 415, 496, 526, 665, 1039
CviQI	GTAC	3 cut(s)	242, 252, 607
DdeI	CTNAG	9 cut(s)	30, 108, 207, 306, 354, 378, 520, 659, 777
DpnI	GATC	4 cut(s)	16, 28, 645, 860
DpnII	GATC	4 cut(s)	14, 26, 643, 858
DriI	GACNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	186, 200
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EarI	CTCTTC	2 cut(s)	186, 200
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	1056
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	128
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	5 cut(s)	81, 123, 217, 442, 1104
Eco81I	CCTNAGG	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	8 cut(s)	203, 224, 352, 418, 499, 529, 668, 1042
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	8 cut(s)	199, 220, 348, 414, 495, 525, 664, 1038
FbaI	TGATCA	1 cut(s)	858
Fnu4HI	GCNGC	4 cut(s)	93, 375, 423, 514
FokI	GGATG	2 cut(s)	514, 877
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	4 cut(s)	93, 375, 423, 514
FspBI	CTAG	2 cut(s)	548, 630
GluI	GCNGC	4 cut(s)	93, 375, 423, 514
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	567, 1056
HapII	CCGG	2 cut(s)	928, 987
HgaI	GACGC	2 cut(s)	368, 1034
Hin1II	CATG	8 cut(s)	203, 224, 352, 418, 499, 529, 668, 1042
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	8 cut(s)	173, 345, 466, 681, 702, 924, 1091, 1097
HpaII	CCGG	2 cut(s)	928, 987
HphI	GGTGA	4 cut(s)	728, 764, 916, 976
Hpy188I	TCNGA	5 cut(s)	122, 943, 1084, 1096, 1102
HpyAV	CCTTC	4 cut(s)	119, 376, 553, 777
HpyCH4III	ACNGT	2 cut(s)	293, 912
HpyCH4IV	ACGT	4 cut(s)	406, 618, 687, 880
HpyCH4V	TGCA	5 cut(s)	61, 414, 516, 806, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 383, 392, 522, 803
HpyF3I	CTNAG	9 cut(s)	30, 108, 207, 306, 354, 378, 520, 659, 777
HpySE526I	ACGT	4 cut(s)	406, 618, 687, 880
Hsp92II	CATG	8 cut(s)	203, 224, 352, 418, 499, 529, 668, 1042
Ksp22I	TGATCA	1 cut(s)	858
Kzo9I	GATC	4 cut(s)	14, 26, 643, 858
LmnI	GCTCC	2 cut(s)	203, 399
Lsp1109I	GCAGC	4 cut(s)	79, 361, 409, 500
LweI	GCATC	2 cut(s)	361, 664
MaeI	CTAG	2 cut(s)	548, 630
MaeII	ACGT	4 cut(s)	406, 618, 687, 880
MalI	GATC	4 cut(s)	16, 28, 645, 860
MboI	GATC	4 cut(s)	14, 26, 643, 858
MboII	GAAGA	9 cut(s)	72, 173, 187, 299, 303, 740, 839, 973, 1097
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	2 cut(s)	208, 404
MluCI	AATT	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	339, 933
MseI	TTAA	3 cut(s)	333, 792, 1001
MslI	CAYNNNNRTG	3 cut(s)	219, 500, 669
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	928, 987
MunI	CAATTG	1 cut(s)	438
MwoI	GCNNNNNNNGC	5 cut(s)	98, 383, 392, 522, 803
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	14, 26, 643, 858
NlaIII	CATG	8 cut(s)	203, 224, 352, 418, 499, 529, 668, 1042
NlaIV	GGNNCC	2 cut(s)	130, 874
NspI	RCATGY	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	1056
PciI	ACATGT	1 cut(s)	220
PfeI	GAWTC	6 cut(s)	173, 466, 681, 702, 1091, 1097
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	4 cut(s)	94, 376, 424, 515
Ple19I	CGATCG	1 cut(s)	646
PleI	GAGTC	2 cut(s)	339, 932
PpsI	GAGTC	2 cut(s)	339, 932
Ppu21I	YACGTR	1 cut(s)	881
PpuMI	RGGWCCY	1 cut(s)	128
PscI	ACATGT	1 cut(s)	220
PshAI	GACNNNNGTC	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	792
PsiI	TTATAA	1 cut(s)	579
Psp124BI	GAGCTC	1 cut(s)	208
Psp1406I	AACGTT	1 cut(s)	687
Psp5II	RGGWCCY	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	130, 874
PspPI	GGNCC	1 cut(s)	128
PspPPI	RGGWCCY	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	362
PvuI	CGATCG	1 cut(s)	646
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	243, 253, 608
RsaNI	GTAC	3 cut(s)	242, 252, 607
RseI	CAYNNNNRTG	3 cut(s)	219, 500, 669
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	3 cut(s)	333, 792, 1001
SatI	GCNGC	4 cut(s)	93, 375, 423, 514
Sau3AI	GATC	4 cut(s)	14, 26, 643, 858
Sau96I	GGNCC	1 cut(s)	128
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	2 cut(s)	339, 933
SduI	GDGCHC	2 cut(s)	208, 404
SfaNI	GCATC	2 cut(s)	361, 664
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	3 cut(s)	219, 500, 669
Sse9I	AATT	1 cut(s)	438
SseBI	AGGCCT	1 cut(s)	1056
SsiI	CCGC	3 cut(s)	876, 1070, 1125
SspMI	CTAG	2 cut(s)	548, 630
SstI	GAGCTC	1 cut(s)	208
StuI	AGGCCT	1 cut(s)	1056
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	293, 912
TaiI	ACGT	4 cut(s)	409, 621, 690, 883
TaqI	TCGA	3 cut(s)	13, 25, 314
TasI	AATT	1 cut(s)	438
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	6 cut(s)	173, 466, 681, 702, 1091, 1097
Tru1I	TTAA	3 cut(s)	333, 792, 1001
Tru9I	TTAA	3 cut(s)	333, 792, 1001
TscAI	CASTG	3 cut(s)	331, 577, 813
TseI	GCWGC	4 cut(s)	92, 374, 422, 513
TspDTI	ATGAA	5 cut(s)	72, 168, 203, 215, 285
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	3 cut(s)	331, 577, 813
Tth111I	GACNNNGTC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	128
VspI	ATTAAT	1 cut(s)	792
XceI	RCATGY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	846
XspI	CTAG	2 cut(s)	548, 630
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.