Rmu_sc0002073.1_g000002

Biotin synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002073.1
OG0015317
Physical Location & Seq
Reverse (-)
12204 .. 16376
4173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002073.1_g000002.1.cds

Sequence Viewer

Length: 1155 bp
atgatgttctccataaggtccattctgcgccaaggcctcagaccggcgtcgtcgtcggcgtcggcgtcggcggcattttactcctctctagcttcatcagcagctgcaattgaagcagagagaacagtcctacaaggtcctcgaaatgactggactcgcgacgagatcagagccgtctacgactctcctgttctcgatctcctcttccatggagctcaggttcacagacatacacataattttagagaagtgcaacagtgcactctcctctctatcaagactggcggctgtagtgaggattgctcctattgccctcagtcctctagatacgataccggactcaaggcacaaaagcttatgaataaggacgatgtaatgaaagcagcgaaaaaggcaaaagaggctggtagcacacgcttttgcatgggtgctgcctggagggagacagttggaagaaagacaaactttaaccagatccttgaatatgtgaaagaaataaggaatttgggaatggaagtgtgctgcaccttaggcatgatagaacagcagcaagcgttaaaacttaaggaagctggcctgacagcttataatcacaatctagacacctcaagggaatattatcccaatgtcattaccacaaggacctatgatgaccgcttggaaacaattaagtatgtcagggatgcaggaattagtgtgtgttcaggaggaataatagggcttggagaagcagaggaggatcgagttggtttgttgcatacattagcaacacttccatctcacccagaaagtgttcccataaacgcgctgattagtgtgaaagggacacctcttcaggatcaaaagccagttgaaatatgggagatgatacgcatgattgccacagcacgtatagtcatgccaaaagccatggtcagactgtcagctggcagagttcgtttttcaatgcctgagcaggcactgtgctttcttgctggggcaaattcaatatttactggtgaaaaactattgaccacacctaacaatgattttgatgccgatcaagttatgttcaaggtgcttggactaattccaaaacctccaagtttctccgatgaatcaccaaaggcatccgaggcagaagcttgtgaggatgctgtttccgtttcagcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
KEGG Pathways
Metabolic & Signaling
ko00780 ko01100 map00780 map01100
Pfam Domains
Protein Families
BATS Radical_SAM

Protein Analysis

384

Amino Acids

42.26

Weight (kDa)

6.67

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43360
fragaria_vesca FvH4_4g11460 FvH4_4g11460
malus_domestica MD04G1037300.v1.1
prunus_persica Prupe.1G186700_v2.0.a1
pyrus_communis pycom04g03040
rosa_chinensis RchiOBHm_Chr4g0408131
rosa_laevigata RLG00000008670 RLG00000008673
rosa_multiflora Rmu_sc0002073.1_g000002
rosa_roxburghii Rroxscaffold_5G00352620
rosa_rugosa Rorug04G0083700
rosa_samantha Rh4AG148100 Rh4BG145300 Rh4DG141800
rosa_wichuraiana Rw4G012120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AccI GTMKAC 1 cut(s) 177
AccII CGCG 2 cut(s) 159, 806
AciI CCGC 3 cut(s) 71, 285, 655
AclWI GGATC 3 cut(s) 469, 747, 846
AcsI RAATTY 2 cut(s) 502, 982
AcuI CTGAAG 1 cut(s) 818
AcyI GRCGYC 3 cut(s) 47, 59, 65
AfiI CCNNNNNNNGG 1 cut(s) 43
AflII CTTAAG 1 cut(s) 563
AgsI TTSAA 6 cut(s) 113, 482, 854, 945, 987, 1054
AjnI CCWGG 1 cut(s) 434
AloI GAACNNNNNNTCC 2 cut(s) 204, 236
AluBI AGCT 8 cut(s) 92, 104, 215, 355, 572, 584, 926, 1124
AluI AGCT 8 cut(s) 92, 104, 215, 355, 572, 584, 926, 1124
Alw21I GWGCWC 2 cut(s) 217, 263
Alw26I GTCTC 1 cut(s) 437
Alw44I GTGCAC 1 cut(s) 259
AlwI GGATC 3 cut(s) 469, 747, 846
AlwNI CAGNNNCTG 2 cut(s) 104, 961
AoxI GGCC 2 cut(s) 34, 574
ApaLI GTGCAC 1 cut(s) 259
ApeKI GCWGC 6 cut(s) 101, 104, 383, 431, 522, 547
ApoI RAATTY 2 cut(s) 502, 982
Asp700I GAANNNNTTC 1 cut(s) 792
AspLEI GCGC 2 cut(s) 30, 808
AspS9I GGNCC 3 cut(s) 18, 137, 642
AsuHPI GGTGA 3 cut(s) 773, 1010, 1092
AvaII GGWCC 3 cut(s) 18, 137, 642
AxyI CCTNAGG 1 cut(s) 529
BaeGI GKGCMC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 2 cut(s) 217, 263
BbvI GCAGC 6 cut(s) 91, 113, 395, 418, 509, 559
BccI CCATC 1 cut(s) 784
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 3 cut(s) 89, 324, 599
BfmI CTRYAG 1 cut(s) 289
BfrI CTTAAG 1 cut(s) 563
BisI GCNGC 8 cut(s) 72, 102, 105, 286, 384, 432, 523, 548
BlsI GCNGC 8 cut(s) 73, 103, 106, 287, 385, 433, 524, 549
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 3 cut(s) 18, 137, 642
BmgT120I GGNCC 3 cut(s) 18, 137, 642
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 4 cut(s) 673, 1024, 1118, 1123
BoxI GACNNNNGTC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 1 cut(s) 457
Bpu10I CCTNAGC 2 cut(s) 216, 951
BpuEI CTTGAG 2 cut(s) 326, 592
BsaAI YACGTR 1 cut(s) 890
BsaBI GATNNNNATC 1 cut(s) 1038
BsaHI GRCGYC 3 cut(s) 47, 59, 65
BsaJI CCNNGG 4 cut(s) 31, 208, 909, 1113
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 4 cut(s) 155, 286, 848, 1000
Bse21I CCTNAGG 1 cut(s) 529
Bse8I GATNNNNATC 1 cut(s) 1038
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 4 cut(s) 31, 208, 909, 1113
BseGI GGATG 3 cut(s) 688, 1109, 1138
BseJI GATNNNNATC 1 cut(s) 1038
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 4 cut(s) 52, 230, 329, 942
BseNI ACTGG 4 cut(s) 155, 286, 848, 1000
BseRI GAGGAG 4 cut(s) 73, 191, 257, 749
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 6 cut(s) 91, 113, 395, 418, 509, 559
BseYI CCCAGC 1 cut(s) 974
BsgI GTGCAG 1 cut(s) 508
Bsh1236I CGCG 2 cut(s) 159, 806
BshFI GGCC 2 cut(s) 36, 576
BsiHKAI GWGCWC 2 cut(s) 217, 263
BsiSI CCGG 2 cut(s) 44, 336
BslFI GGGAC 1 cut(s) 838
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 838
BsnI GGCC 2 cut(s) 36, 576
Bsp1286I GDGCHC 2 cut(s) 217, 263
Bsp143I GATC 6 cut(s) 165, 196, 474, 739, 838, 1039
Bsp19I CCATGG 2 cut(s) 208, 909
Bsp68I TCGCGA 1 cut(s) 159
BspACI CCGC 3 cut(s) 71, 285, 655
BspANI GGCC 2 cut(s) 36, 576
BspCNI CTCAG 4 cut(s) 51, 229, 328, 943
BspFNI CGCG 2 cut(s) 159, 806
BspPI GGATC 3 cut(s) 469, 747, 846
BspTI CTTAAG 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 4 cut(s) 155, 286, 848, 1000
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 4 cut(s) 31, 208, 909, 1113
BssMI GATC 6 cut(s) 165, 196, 474, 739, 838, 1039
BssNI GRCGYC 3 cut(s) 47, 59, 65
BssT1I CCWWGG 3 cut(s) 31, 208, 909
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 5 cut(s) 127, 258, 448, 921, 963
Bst6I CTCTTC 2 cut(s) 209, 837
BstACI GRCGYC 3 cut(s) 47, 59, 65
BstAFI CTTAAG 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 890
BstC8I GCNNGC 4 cut(s) 552, 574, 928, 957
BstDEI CTNAG 5 cut(s) 38, 216, 315, 529, 951
BstDSI CCRYGG 2 cut(s) 208, 909
BstF5I GGATG 3 cut(s) 688, 1109, 1138
BstFNI CGCG 2 cut(s) 159, 806
BstHHI GCGC 2 cut(s) 30, 808
BstKTI GATC 6 cut(s) 168, 199, 477, 742, 841, 1042
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 6 cut(s) 165, 196, 474, 739, 838, 1039
BstMWI GCNNNNNNNGC 8 cut(s) 71, 98, 113, 309, 392, 401, 531, 1115
BstNI CCWGG 1 cut(s) 436
BstPAI GACNNNNGTC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 434
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 2 cut(s) 159, 806
BstV1I GCAGC 6 cut(s) 91, 113, 395, 418, 509, 559
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
Bsu36I CCTNAGG 1 cut(s) 529
BsuRI GGCC 2 cut(s) 36, 576
BtgI CCRYGG 2 cut(s) 208, 909
BtsCI GGATG 3 cut(s) 688, 1109, 1138
BtsIMutI CAGTG 2 cut(s) 263, 959
BtuMI TCGCGA 1 cut(s) 159
Cac8I GCNNGC 4 cut(s) 552, 574, 928, 957
CaiI CAGNNNCTG 2 cut(s) 104, 961
CfoI GCGC 2 cut(s) 30, 808
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 18, 137, 642
CseI GACGC 3 cut(s) 36, 48, 54
CviAII CATG 6 cut(s) 209, 424, 535, 874, 898, 910
DdeI CTNAG 5 cut(s) 38, 216, 315, 529, 951
DpnI GATC 6 cut(s) 167, 198, 476, 741, 840, 1041
DpnII GATC 6 cut(s) 165, 196, 474, 739, 838, 1039
Eam1104I CTCTTC 2 cut(s) 209, 837
EarI CTCTTC 2 cut(s) 209, 837
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 3 cut(s) 31, 208, 909
Eco147I AGGCCT 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 3 cut(s) 18, 137, 642
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 818
Eco81I CCTNAGG 1 cut(s) 529
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 2 cut(s) 137, 642
EcoRII CCWGG 1 cut(s) 434
EcoT14I CCWWGG 3 cut(s) 31, 208, 909
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 3 cut(s) 31, 208, 909
FaeI CATG 6 cut(s) 212, 427, 538, 877, 901, 913
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 838
FatI CATG 6 cut(s) 208, 423, 534, 873, 897, 909
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 8 cut(s) 72, 102, 105, 286, 384, 432, 523, 548
FokI GGATG 3 cut(s) 695, 1096, 1145
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 8 cut(s) 72, 102, 105, 286, 384, 432, 523, 548
FspBI CTAG 3 cut(s) 89, 324, 599
GlaI GCGC 2 cut(s) 29, 807
GluI GCNGC 8 cut(s) 72, 102, 105, 286, 384, 432, 523, 548
GsaI CCCAGC 1 cut(s) 978
GsuI CTGGAG 1 cut(s) 457
HaeIII GGCC 2 cut(s) 36, 576
HapII CCGG 2 cut(s) 44, 336
HgaI GACGC 3 cut(s) 36, 48, 54
HhaI GCGC 2 cut(s) 30, 808
Hin1I GRCGYC 3 cut(s) 47, 59, 65
Hin1II CATG 6 cut(s) 212, 427, 538, 877, 901, 913
Hin6I GCGC 2 cut(s) 28, 806
HinP1I GCGC 2 cut(s) 28, 806
HindIII AAGCTT 2 cut(s) 353, 1122
HinfI GANTC 4 cut(s) 154, 182, 339, 1097
HpaII CCGG 2 cut(s) 44, 336
HphI GGTGA 3 cut(s) 773, 1010, 1092
Hpy166II GTNNAC 3 cut(s) 178, 223, 261
Hpy188I TCNGA 5 cut(s) 41, 170, 917, 1093, 1114
Hpy188III TCNNGA 7 cut(s) 158, 194, 277, 324, 599, 705, 836
Hpy8I GTNNAC 3 cut(s) 178, 223, 261
Hpy99I CGWCG 6 cut(s) 52, 55, 58, 64, 70, 164
HpyCH4III ACNGT 5 cut(s) 127, 258, 448, 921, 963
HpyCH4IV ACGT 1 cut(s) 889
HpyCH4V TGCA 7 cut(s) 107, 253, 261, 423, 525, 686, 757
HpyF10VI GCNNNNNNNGC 8 cut(s) 71, 98, 113, 309, 392, 401, 531, 1115
HpyF3I CTNAG 5 cut(s) 38, 216, 315, 529, 951
HpySE526I ACGT 1 cut(s) 889
Hsp92I GRCGYC 3 cut(s) 47, 59, 65
Hsp92II CATG 6 cut(s) 212, 427, 538, 877, 901, 913
HspAI GCGC 2 cut(s) 28, 806
Kzo9I GATC 6 cut(s) 165, 196, 474, 739, 838, 1039
LmnI GCTCC 2 cut(s) 212, 308
Lsp1109I GCAGC 6 cut(s) 91, 113, 395, 418, 509, 559
LweI GCATC 4 cut(s) 673, 1024, 1118, 1123
MaeI CTAG 3 cut(s) 89, 324, 599
MaeII ACGT 1 cut(s) 889
MalI GATC 6 cut(s) 167, 198, 476, 741, 840, 1041
MboI GATC 6 cut(s) 165, 196, 474, 739, 838, 1039
MboII GAAGA 3 cut(s) 196, 465, 824
MfeI CAATTG 1 cut(s) 108
MflI RGATCY 1 cut(s) 474
MhlI GDGCHC 2 cut(s) 217, 263
MluCI AATT 7 cut(s) 108, 238, 502, 666, 690, 982, 1068
MlyI GAGTC 3 cut(s) 148, 176, 333
MmeI TCCRAC 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 4 cut(s) 468, 557, 564, 669
MspA1I CMGCKG 2 cut(s) 104, 926
MspCI CTTAAG 1 cut(s) 563
MspI CCGG 2 cut(s) 44, 336
MspR9I CCNGG 1 cut(s) 436
MunI CAATTG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 436
MvnI CGCG 2 cut(s) 159, 806
MwoI GCNNNNNNNGC 8 cut(s) 71, 98, 113, 309, 392, 401, 531, 1115
NcoI CCATGG 2 cut(s) 208, 909
NdeII GATC 6 cut(s) 165, 196, 474, 739, 838, 1039
NlaIII CATG 6 cut(s) 212, 427, 538, 877, 901, 913
NruI TCGCGA 1 cut(s) 159
PceI AGGCCT 1 cut(s) 36
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 62
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 1 cut(s) 1097
PkrI GCNGC 8 cut(s) 73, 103, 106, 287, 385, 433, 524, 549
PleI GAGTC 3 cut(s) 148, 176, 333
PpsI GAGTC 3 cut(s) 148, 176, 333
Ppu21I YACGTR 1 cut(s) 890
PpuMI RGGWCCY 2 cut(s) 137, 642
PshAI GACNNNNGTC 1 cut(s) 46
PsiI TTATAA 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 2 cut(s) 137, 642
Psp6I CCWGG 1 cut(s) 434
PspFI CCCAGC 1 cut(s) 974
PspGI CCWGG 1 cut(s) 434
PspPI GGNCC 3 cut(s) 18, 137, 642
PspPPI RGGWCCY 2 cut(s) 137, 642
PstNI CAGNNNCTG 2 cut(s) 104, 961
PsuI RGATCY 1 cut(s) 474
PvuII CAGCTG 2 cut(s) 104, 926
RruI TCGCGA 1 cut(s) 159
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 4 cut(s) 468, 557, 564, 669
SatI GCNGC 8 cut(s) 72, 102, 105, 286, 384, 432, 523, 548
Sau3AI GATC 6 cut(s) 165, 196, 474, 739, 838, 1039
Sau96I GGNCC 3 cut(s) 18, 137, 642
SchI GAGTC 3 cut(s) 148, 176, 333
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 2 cut(s) 217, 263
SfaNI GCATC 4 cut(s) 673, 1024, 1118, 1123
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 3 cut(s) 18, 137, 642
SmlI CTYRAG 3 cut(s) 341, 563, 607
SmoI CTYRAG 3 cut(s) 341, 563, 607
Sse9I AATT 7 cut(s) 108, 238, 502, 666, 690, 982, 1068
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 3 cut(s) 71, 285, 655
SspI AATATT 2 cut(s) 617, 990
SspMI CTAG 3 cut(s) 89, 324, 599
SstI GAGCTC 1 cut(s) 217
StuI AGGCCT 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 434
StyI CCWWGG 3 cut(s) 31, 208, 909
TaaI ACNGT 5 cut(s) 127, 258, 448, 921, 963
TaiI ACGT 1 cut(s) 892
TaqI TCGA 3 cut(s) 142, 195, 742
TasI AATT 7 cut(s) 108, 238, 502, 666, 690, 982, 1068
TauI GCSGC 2 cut(s) 74, 288
TfiI GAWTC 1 cut(s) 1097
Tru1I TTAA 4 cut(s) 468, 557, 564, 669
Tru9I TTAA 4 cut(s) 468, 557, 564, 669
TscAI CASTG 2 cut(s) 263, 966
TseI GCWGC 6 cut(s) 101, 104, 383, 431, 522, 547
TspDTI ATGAA 4 cut(s) 84, 374, 392, 1110
TspGWI ACGGA 1 cut(s) 1132
TspRI CASTG 2 cut(s) 263, 966
Vha464I CTTAAG 1 cut(s) 563
VneI GTGCAC 1 cut(s) 259
VpaK11BI GGWCC 3 cut(s) 18, 137, 642
XapI RAATTY 2 cut(s) 502, 982
XbaI TCTAGA 2 cut(s) 323, 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 855
XmiI GTMKAC 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 3 cut(s) 89, 324, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.