Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015317

Physical Location & Seq

Genomic Coordinates Reverse (-)

17031199 .. 17036167

Gene Structure 4969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G186700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGATTTCGACTAGGTCCGTTTTGCGCGGGCAGCTAAGACCGTCGGTTGCTGTGTTGCACTCTTCATTTTACTCTTCTTTATCATCTGCAGCTGCAATTCAAGCTGAGAGAACAATCAGACAAGGCCCCAGAAATGACTGGAACCGCGACGAGATCAAGGCCGTCTATGGCTCTCCTGTTCTCGATCTCCTTTTCCACGGGGCTCAAGTTCACAGACACACGCATAATTTTAGGGAAGTGCAGCAGTGTACTCTCCTCTCTATCAAGACTGGTGGATGTAGTGAGGATTGTTCGTATTGTCCTCAATCGTCCCGGTATGACACAGGACTCAAGGCCCAAAAGCTTATGACAAAGGACGCTGTCATGGAGGCAGCACAAAAGGCAAAAGAGGCTGGAAGCACACGCTTTTGCATGGGTGCTGCATGGAGGGATACAGTTGGAAGAAAGACAAACTTTAACCAGATCCTTGAATATGTAAAAGACATAAGGGGTATGGGAATGGAGGTGTGCTGCACCTTAGGCATGCTAGAAAAGCAACAAGCTTTGAAACTCAAAGAAGCAGGCCTGACAGCATACAATCACAATCTTGACACCTCTAGGGAATATTACCCAAATGTCATTACCACAAGGACCTATGATGAGCGCTTGGAAACCATTAAGTTTGTCCGGGATGCAGGAATTAGTGTGTGTTCAGGAGGAATAATAGGGCTTGGAGAAGCTGAGGAGGATAGAGTTGGTTTGCTTCATACATTAGCAACACTCCCATCTCACCCAGAAAGTGTTCCCATCAATGCACTGGTTTCAGTGAAAGGCACACCTCTTCAAGATCAGAAGCCAGTTGAAATTTGGGAGATGATACGAATGATTGCCACTGCCCGTATAGTCATGCCAAAAGCAATGGTCAGATTGTCAGCTGGCAGAGTAAAGTTTTCAATGCCAGAGCAGGCATTGTGCTTTCTTGCTGGTGCAAATTCGATATTCACTGGTGAGAAGCTATTGACTACTCCAAACAATGATTTTGATGCTGATCAACTCATGTTCAAGGTGCTTGGTCTGATTCCCAAAGCTCCCAGTTTCTCTGAGGAACCAGCAAAGGCGTATGAGGCAGAGGCTTGTGAGGAAGCTGTTTCCAGTTCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BATS Radical_SAM

Protein Analysis

381

Amino Acids

41.85

Weight (kDa)

7.55

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43360
fragaria_vesca	FvH4_4g11460 FvH4_4g11460
malus_domestica	MD04G1037300.v1.1
prunus_persica	Prupe.1G186700_v2.0.a1
pyrus_communis	pycom04g03040
rosa_chinensis	RchiOBHm_Chr4g0408131
rosa_laevigata	RLG00000008670 RLG00000008673
rosa_multiflora	Rmu_sc0002073.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352620
rosa_rugosa	Rorug04G0083700
rosa_samantha	Rh4AG148100 Rh4BG145300 Rh4DG141800
rosa_wichuraiana	Rw4G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	27, 147
AciI	CCGC	2 cut(s)	27, 145
AclWI	GGATC	1 cut(s)	457
AcsI	RAATTY	2 cut(s)	843, 970
AfaI	GTAC	1 cut(s)	250
AfeI	AGCGCT	1 cut(s)	644
AgsI	TTSAA	7 cut(s)	101, 470, 547, 824, 842, 933, 1042
AlwI	GGATC	1 cut(s)	457
Aor51HI	AGCGCT	1 cut(s)	644
AoxI	GGCC	4 cut(s)	124, 159, 333, 562
ApeKI	GCWGC	7 cut(s)	31, 89, 92, 241, 371, 419, 510
ApoI	RAATTY	2 cut(s)	843, 970
Asp700I	GAANNNNTTC	1 cut(s)	780
AspLEI	GCGC	2 cut(s)	27, 645
AspS9I	GGNCC	4 cut(s)	15, 125, 334, 630
AsuC2I	CCSGG	2 cut(s)	313, 668
AsuHPI	GGTGA	2 cut(s)	761, 998
AvaII	GGWCC	2 cut(s)	15, 630
AxyI	CCTNAGG	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	205
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	7 cut(s)	43, 79, 101, 253, 383, 406, 497
BccI	CCATC	2 cut(s)	772, 794
BceAI	ACGGC	1 cut(s)	146
BciVI	GTATCC	1 cut(s)	424
BclI	TGATCA	1 cut(s)	1027
BcnI	CCSGG	2 cut(s)	313, 668
BfaI	CTAG	3 cut(s)	12, 527, 597
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	646
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	7 cut(s)	32, 90, 93, 242, 372, 420, 511
BlsI	GCNGC	7 cut(s)	33, 91, 94, 243, 373, 421, 512
Bme1390I	CCNGG	2 cut(s)	313, 668
Bme18I	GGWCC	2 cut(s)	15, 630
BmgT120I	GGNCC	4 cut(s)	15, 125, 334, 630
BmiI	GGNNCC	3 cut(s)	127, 143, 1086
BmrFI	CCNGG	2 cut(s)	313, 668
BmrI	ACTGGG	1 cut(s)	1065
BmsI	GCATC	2 cut(s)	661, 1012
BmuI	ACTGGG	1 cut(s)	1065
Bpu10I	CCTNAGC	1 cut(s)	720
BpuEI	CTTGAG	2 cut(s)	189, 314
BpuMI	CCSGG	2 cut(s)	313, 668
BsaBI	GATNNNNATC	1 cut(s)	1026
BsaJI	CCNNGG	1 cut(s)	196
Bse1I	ACTGG	7 cut(s)	143, 274, 801, 836, 988, 1071, 1131
Bse21I	CCTNAGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	903
Bse8I	GATNNNNATC	1 cut(s)	1026
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	281, 676
BseJI	GATNNNNATC	1 cut(s)	1026
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	3 cut(s)	96, 711, 1071
BseNI	ACTGG	7 cut(s)	143, 274, 801, 836, 988, 1071, 1131
BseRI	GAGGAG	2 cut(s)	245, 737
BseXI	GCAGC	7 cut(s)	43, 79, 101, 253, 383, 406, 497
BsgI	GTGCAG	2 cut(s)	260, 496
Bsh1236I	CGCG	2 cut(s)	27, 147
BshFI	GGCC	4 cut(s)	126, 161, 335, 564
BsiSI	CCGG	2 cut(s)	313, 667
BslFI	GGGAC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	4 cut(s)	126, 161, 335, 564
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	5 cut(s)	153, 184, 462, 826, 1027
BspACI	CCGC	2 cut(s)	27, 145
BspANI	GGCC	4 cut(s)	126, 161, 335, 564
BspCNI	CTCAG	3 cut(s)	97, 712, 1072
BspFNI	CGCG	2 cut(s)	27, 147
BspLI	GGNNCC	3 cut(s)	127, 143, 1086
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	7 cut(s)	143, 274, 801, 836, 988, 1071, 1131
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	5 cut(s)	153, 184, 462, 826, 1027
Bst4CI	ACNGT	2 cut(s)	42, 436
Bst6I	CTCTTC	3 cut(s)	67, 79, 825
BstC8I	GCNNGC	5 cut(s)	29, 524, 562, 916, 945
BstDEI	CTNAG	5 cut(s)	35, 105, 517, 720, 1080
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	281, 676
BstFNI	CGCG	2 cut(s)	27, 147
BstH2I	RGCGCY	1 cut(s)	646
BstHHI	GCGC	2 cut(s)	27, 645
BstKTI	GATC	5 cut(s)	156, 187, 465, 829, 1030
BstMBI	GATC	5 cut(s)	153, 184, 462, 826, 1027
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 101, 380, 389, 519, 532, 1103
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	311, 666
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	2 cut(s)	27, 147
BstV1I	GCAGC	7 cut(s)	43, 79, 101, 253, 383, 406, 497
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
Bsu36I	CCTNAGG	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	4 cut(s)	126, 161, 335, 564
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	281, 676
BtsI	GCAGTG	2 cut(s)	251, 870
BtsIMutI	CAGTG	5 cut(s)	251, 794, 810, 870, 981
Cac8I	GCNNGC	5 cut(s)	29, 524, 562, 916, 945
CfoI	GCGC	2 cut(s)	27, 645
Cfr13I	GGNCC	4 cut(s)	15, 125, 334, 630
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	249
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	6 cut(s)	364, 412, 423, 523, 886, 1036
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	5 cut(s)	35, 105, 517, 720, 1080
DpnI	GATC	5 cut(s)	155, 186, 464, 828, 1029
DpnII	GATC	5 cut(s)	153, 184, 462, 826, 1027
Eam1104I	CTCTTC	3 cut(s)	67, 79, 825
EarI	CTCTTC	3 cut(s)	67, 79, 825
Eco147I	AGGCCT	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	15, 630
Eco47III	AGCGCT	1 cut(s)	644
Eco81I	CCTNAGG	1 cut(s)	517
EcoO109I	RGGNCCY	2 cut(s)	125, 630
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	6 cut(s)	367, 415, 426, 526, 889, 1039
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	6 cut(s)	363, 411, 422, 522, 885, 1035
FauI	CCCGC	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	1027
Fnu4HI	GCNGC	7 cut(s)	32, 90, 93, 242, 372, 420, 511
FokI	GGATG	2 cut(s)	288, 683
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	7 cut(s)	32, 90, 93, 242, 372, 420, 511
FspBI	CTAG	3 cut(s)	12, 527, 597
GlaI	GCGC	2 cut(s)	26, 644
GluI	GCNGC	7 cut(s)	32, 90, 93, 242, 372, 420, 511
HaeII	RGCGCY	1 cut(s)	646
HaeIII	GGCC	4 cut(s)	126, 161, 335, 564
HapII	CCGG	2 cut(s)	313, 667
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	27, 645
Hin1II	CATG	6 cut(s)	367, 415, 426, 526, 889, 1039
Hin6I	GCGC	2 cut(s)	25, 643
HinP1I	GCGC	2 cut(s)	25, 643
HindIII	AAGCTT	2 cut(s)	341, 540
HinfI	GANTC	2 cut(s)	327, 1057
HpaII	CCGG	2 cut(s)	313, 667
HphI	GGTGA	2 cut(s)	761, 998
Hpy166II	GTNNAC	2 cut(s)	211, 249
Hpy188I	TCNGA	5 cut(s)	119, 831, 905, 1056, 1081
Hpy188III	TCNNGA	5 cut(s)	182, 265, 587, 693, 824
Hpy8I	GTNNAC	2 cut(s)	211, 249
Hpy99I	CGWCG	2 cut(s)	46, 152
HpyCH4III	ACNGT	2 cut(s)	42, 436
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 101, 380, 389, 519, 532, 1103
HpyF3I	CTNAG	5 cut(s)	35, 105, 517, 720, 1080
Hsp92II	CATG	6 cut(s)	367, 415, 426, 526, 889, 1039
HspAI	GCGC	2 cut(s)	25, 643
Ksp22I	TGATCA	1 cut(s)	1027
Kzo9I	GATC	5 cut(s)	153, 184, 462, 826, 1027
LmnI	GCTCC	1 cut(s)	1072
Lsp1109I	GCAGC	7 cut(s)	43, 79, 101, 253, 383, 406, 497
LweI	GCATC	2 cut(s)	661, 1012
MaeI	CTAG	3 cut(s)	12, 527, 597
MalI	GATC	5 cut(s)	155, 186, 464, 828, 1029
MboI	GATC	5 cut(s)	153, 184, 462, 826, 1027
MboII	GAAGA	4 cut(s)	54, 66, 453, 812
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	5 cut(s)	96, 226, 678, 843, 970
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	2 cut(s)	456, 657
MspA1I	CMGCKG	2 cut(s)	92, 914
MspI	CCGG	2 cut(s)	313, 667
MspR9I	CCNGG	2 cut(s)	313, 668
MvnI	CGCG	2 cut(s)	27, 147
MwoI	GCNNNNNNNGC	7 cut(s)	31, 101, 380, 389, 519, 532, 1103
NciI	CCSGG	2 cut(s)	313, 668
NdeII	GATC	5 cut(s)	153, 184, 462, 826, 1027
NlaIII	CATG	6 cut(s)	367, 415, 426, 526, 889, 1039
NlaIV	GGNNCC	3 cut(s)	127, 143, 1086
NspI	RCATGY	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	526
PceI	AGGCCT	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	1 cut(s)	1057
PflFI	GACNNNGTC	2 cut(s)	13, 359
PfoI	TCCNGGA	1 cut(s)	666
PkrI	GCNGC	7 cut(s)	33, 91, 94, 243, 373, 421, 512
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	630
PspN4I	GGNNCC	3 cut(s)	127, 143, 1086
PspPI	GGNCC	4 cut(s)	15, 125, 334, 630
PspPPI	RGGWCCY	1 cut(s)	630
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	462
PsyI	GACNNNGTC	2 cut(s)	13, 359
PvuII	CAGCTG	2 cut(s)	92, 914
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	456, 657
SatI	GCNGC	7 cut(s)	32, 90, 93, 242, 372, 420, 511
Sau3AI	GATC	5 cut(s)	153, 184, 462, 826, 1027
Sau96I	GGNCC	4 cut(s)	15, 125, 334, 630
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	2 cut(s)	313, 668
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	2 cut(s)	661, 1012
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	15, 630
SmlI	CTYRAG	2 cut(s)	204, 329
SmoI	CTYRAG	2 cut(s)	204, 329
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	5 cut(s)	96, 226, 678, 843, 970
SseBI	AGGCCT	1 cut(s)	564
SsiI	CCGC	2 cut(s)	27, 145
SspI	AATATT	1 cut(s)	605
SspMI	CTAG	3 cut(s)	12, 527, 597
StuI	AGGCCT	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	311, 666
TaaI	ACNGT	2 cut(s)	42, 436
TaqI	TCGA	3 cut(s)	8, 183, 974
TasI	AATT	5 cut(s)	96, 226, 678, 843, 970
TatI	WGTACW	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	1057
Tru1I	TTAA	2 cut(s)	456, 657
Tru9I	TTAA	2 cut(s)	456, 657
TscAI	CASTG	5 cut(s)	251, 801, 810, 877, 988
TseI	GCWGC	7 cut(s)	31, 89, 92, 241, 371, 419, 510
TspDTI	ATGAA	2 cut(s)	54, 734
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	5 cut(s)	251, 801, 810, 877, 988
Tth111I	GACNNNGTC	2 cut(s)	13, 359
VpaK11BI	GGWCC	2 cut(s)	15, 630
XapI	RAATTY	2 cut(s)	843, 970
XceI	RCATGY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	2 cut(s)	793, 843
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	3 cut(s)	12, 527, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.