Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009123

Physical Location & Seq

Genomic Coordinates Forward (+)

18013268 .. 18015530

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGCGGCGGAGGAAACAACGTCGTGAACAAAGTGTTCTACGCGACGTCGTATCATCCGATTCAAGCCGGAAGTATCGACGGAACTGATGTTGCTCCACATGATAACGGCGTCCGTCGAGCTCTTCTCTGTTATAACGCTGGCTTATATGATCCTTCTGGTGATTCGAAGGCTGTTGGAGATCCTTACTGTACTCTCTTCGTGGGTCGTCTCTCTCATCACACTACGGAGGATACACTTCGAGAGGTGATGAGTAAGTATGGCAGGATTAAGAACTTGCGCTTGGTAAGACACATTGTGACGGGAGCTTCACGAGGATATGGTTTTGTGGAGTATGAGACTGAAAAGGAGATGCTTCGTGCTTATGAGGATGCTCATCATTCACTAATAGATGGGCGAGAGATTATTGTTGATTATAATAGACAGCAATTGATGCCTGGATGGATACCAAGAAGACTAGGAGGTGGCCTTGGTGGTAGGAAAGAATCCGGACAACTTCGCTTTGGAGGACGAGATAGACCATTCCGTGCTCCCTTACGACCAATCCCTCATGAAGATTTGAAAAAGCTCGGTATTCAGCTTCCGCCTGAGGGAAGATATATGTCGCGCACACAGATCCCATCACCTCCAAGGAGAAAAGGAAGTGTGTCGGATAGAGAGGAAGAATATTATCGGGAAAAGAGTTCTGTAGAACGGGAAGAAGAGTTTAAAGAGCGAAGCAGCCTTAGGTCATATCACAGTCACAGGTCGAGCGCACACACACACAGTTCTCATAGAAGACGCAGCAAAGACAGAGAGGAGTGTTCCAGGGAAGAGTCCCGTTCTGATAGAAAAGAGAGAGCACGAGGTATGGAAGATCGATATGGTGACAACAAGGGTGAAGTTTCTGGCAGCAAAAGATCAAAACGTTCTGAAGAAGACCGATCTCGCAAACGTCATAAACACTTGCCTTCCCATCATCATAGGAGGTCCTATAGTCAAGATCATCATTCTTCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034693 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

333

Amino Acids

38.38

Weight (kDa)

9.7

Isoelectric Point (pI)

76.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	66 - 135	1.1e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43370 AT2G43370
fragaria_vesca	FvH4_4g12800 FvH4_4g12800 FvH4_4g12800
malus_domestica	MD03G1203000.v1.1 MD04G1022600.v1.1
prunus_persica	Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1
pyrus_communis	pycom04g01950
rosa_chinensis	RchiOBHm_Chr4g0412221 RchiOBHm_Chr4g0412301
rosa_laevigata	RLG00000008309
rosa_multiflora	Rmu_sc0023962.1_g000002 Rmu_sc0035009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356440
rosa_rugosa	Rorug04G0105200 Rorug04G0105200 Rorug04G0105300
rosa_samantha	Rh4CG182800
rosa_wichuraiana	Rw4G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	135, 417
AatII	GACGTC	1 cut(s)	50
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	2 cut(s)	44, 607
AccIII	TCCGGA	1 cut(s)	488
AciI	CCGC	3 cut(s)	6, 9, 584
AclI	AACGTT	1 cut(s)	907
AclWI	GGATC	3 cut(s)	146, 176, 610
AcuI	CTGAAG	1 cut(s)	933
AcyI	GRCGYC	2 cut(s)	47, 111
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	65, 562
AjnI	CCWGG	2 cut(s)	436, 806
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	122, 308, 568, 580
AluI	AGCT	4 cut(s)	122, 308, 568, 580
Alw21I	GWGCWC	3 cut(s)	124, 532, 844
Alw26I	GTCTC	2 cut(s)	215, 332
AlwI	GGATC	3 cut(s)	146, 176, 610
Aor13HI	TCCGGA	1 cut(s)	488
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	3 cut(s)	720, 783, 891
AspLEI	GCGC	3 cut(s)	282, 609, 755
AspS9I	GGNCC	1 cut(s)	969
AsuHPI	GGTGA	5 cut(s)	173, 259, 615, 878, 890
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	969
AxyI	CCTNAGG	2 cut(s)	588, 725
BanII	GRGCYC	1 cut(s)	124
BauI	CACGAG	2 cut(s)	312, 843
BbsI	GAAGAC	3 cut(s)	460, 784, 924
Bbv12I	GWGCWC	3 cut(s)	124, 532, 844
BbvI	GCAGC	3 cut(s)	732, 795, 903
BccI	CCATC	4 cut(s)	386, 435, 628, 963
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	438, 808
BciVI	GTATCC	2 cut(s)	226, 438
BcoDI	GTCTC	2 cut(s)	215, 332
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	2 cut(s)	687, 973
BfuI	GTATCC	2 cut(s)	226, 438
BisI	GCNGC	4 cut(s)	7, 721, 784, 892
BlsI	GCNGC	4 cut(s)	8, 722, 785, 893
Bme1390I	CCNGG	2 cut(s)	438, 808
Bme18I	GGWCC	1 cut(s)	969
BmgT120I	GGNCC	1 cut(s)	969
BmrFI	CCNGG	2 cut(s)	438, 808
BmsI	GCATC	3 cut(s)	342, 361, 423
BpiI	GAAGAC	3 cut(s)	460, 784, 924
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
Bpu14I	TTCGAA	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	859
BsaBI	GATNNNNATC	1 cut(s)	375
BsaHI	GRCGYC	2 cut(s)	47, 111
BsaJI	CCNNGG	3 cut(s)	469, 629, 807
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse21I	CCTNAGG	2 cut(s)	588, 725
Bse8I	GATNNNNATC	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	488
BseBI	CCWGG	2 cut(s)	438, 808
BseCI	ATCGAT	1 cut(s)	859
BseDI	CCNNGG	3 cut(s)	469, 629, 807
BseGI	GGATG	3 cut(s)	55, 376, 446
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	812
BseXI	GCAGC	3 cut(s)	732, 795, 903
Bsh1236I	CGCG	2 cut(s)	44, 607
BshFI	GGCC	1 cut(s)	468
BshVI	ATCGAT	1 cut(s)	859
BsiHKAI	GWGCWC	3 cut(s)	124, 532, 844
BsiSI	CCGG	2 cut(s)	69, 489
BslFI	GGGAC	1 cut(s)	802
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	2 cut(s)	215, 332
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	802
BsnI	GGCC	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	3 cut(s)	124, 532, 844
Bsp13I	TCCGGA	1 cut(s)	488
Bsp143I	GATC	7 cut(s)	151, 181, 615, 856, 899, 923, 982
BspACI	CCGC	3 cut(s)	6, 9, 584
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	1 cut(s)	580
BspDI	ATCGAT	1 cut(s)	859
BspEI	TCCGGA	1 cut(s)	488
BspFNI	CGCG	2 cut(s)	44, 607
BspHI	TCATGA	1 cut(s)	550
BspPI	GGATC	3 cut(s)	146, 176, 610
BspQI	GCTCTTC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	469, 629, 807
BssMI	GATC	7 cut(s)	151, 181, 615, 856, 899, 923, 982
BssNI	GRCGYC	2 cut(s)	47, 111
BssSI	CACGAG	2 cut(s)	312, 843
BssT1I	CCWWGG	2 cut(s)	469, 629
Bst2BI	CACGAG	2 cut(s)	312, 843
Bst2UI	CCWGG	2 cut(s)	438, 808
Bst4CI	ACNGT	3 cut(s)	191, 740, 767
Bst6I	CTCTTC	4 cut(s)	129, 203, 696, 807
BstACI	GRCGYC	2 cut(s)	47, 111
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	588, 725
BstF5I	GGATG	3 cut(s)	55, 376, 446
BstFNI	CGCG	2 cut(s)	44, 607
BstHHI	GCGC	3 cut(s)	282, 609, 755
BstKTI	GATC	7 cut(s)	154, 184, 618, 859, 902, 926, 985
BstMAI	GTCTC	2 cut(s)	215, 332
BstMBI	GATC	7 cut(s)	151, 181, 615, 856, 899, 923, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNI	CCWGG	2 cut(s)	438, 808
BstSCI	CCNGG	2 cut(s)	436, 806
BstSFI	CTRYAG	2 cut(s)	687, 973
BstUI	CGCG	2 cut(s)	44, 607
BstV1I	GCAGC	3 cut(s)	732, 795, 903
BstV2I	GAAGAC	3 cut(s)	460, 784, 924
BstX2I	RGATCY	2 cut(s)	181, 615
BstYI	RGATCY	2 cut(s)	181, 615
Bsu15I	ATCGAT	1 cut(s)	859
Bsu36I	CCTNAGG	2 cut(s)	588, 725
BsuI	GTATCC	2 cut(s)	226, 438
BsuRI	GGCC	1 cut(s)	468
BsuTUI	ATCGAT	1 cut(s)	859
BtsCI	GGATG	3 cut(s)	55, 376, 446
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	3 cut(s)	282, 609, 755
Cfr13I	GGNCC	1 cut(s)	969
ClaI	ATCGAT	1 cut(s)	859
CseI	GACGC	2 cut(s)	100, 789
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	2 cut(s)	101, 551
CviJI	RGCY	9 cut(s)	68, 122, 144, 173, 308, 468, 568, 580, 723
CviKI_1	RGCY	9 cut(s)	68, 122, 144, 173, 308, 468, 568, 580, 723
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	588, 725
DpnI	GATC	7 cut(s)	153, 183, 617, 858, 901, 925, 984
DpnII	GATC	7 cut(s)	151, 181, 615, 856, 899, 923, 982
DraI	TTTAAA	1 cut(s)	709
DraIII	CACNNNGTG	1 cut(s)	298
Eam1104I	CTCTTC	4 cut(s)	129, 203, 696, 807
EarI	CTCTTC	4 cut(s)	129, 203, 696, 807
EciI	GGCGGA	2 cut(s)	24, 573
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	469, 629
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	969
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	933
Eco81I	CCTNAGG	2 cut(s)	588, 725
EcoICRI	GAGCTC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	969
EcoRII	CCWGG	2 cut(s)	436, 806
EcoT14I	CCWWGG	2 cut(s)	469, 629
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	2 cut(s)	469, 629
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	2 cut(s)	104, 554
FaqI	GGGAC	1 cut(s)	802
FatI	CATG	2 cut(s)	100, 550
Fnu4HI	GCNGC	4 cut(s)	7, 721, 784, 892
FokI	GGATG	3 cut(s)	42, 383, 453
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	4 cut(s)	7, 721, 784, 892
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	3 cut(s)	281, 608, 754
GluI	GCNGC	4 cut(s)	7, 721, 784, 892
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	2 cut(s)	69, 489
HgaI	GACGC	2 cut(s)	100, 789
HhaI	GCGC	3 cut(s)	282, 609, 755
Hin1I	GRCGYC	2 cut(s)	47, 111
Hin1II	CATG	2 cut(s)	104, 554
Hin6I	GCGC	3 cut(s)	280, 607, 753
HinP1I	GCGC	3 cut(s)	280, 607, 753
HinfI	GANTC	4 cut(s)	61, 164, 485, 815
HpaII	CCGG	2 cut(s)	69, 489
HphI	GGTGA	5 cut(s)	173, 259, 615, 878, 890
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	5 cut(s)	60, 652, 826, 913, 997
Hpy188III	TCNNGA	7 cut(s)	25, 242, 312, 489, 551, 674, 980
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	5 cut(s)	26, 49, 52, 83, 120
HpyAV	CCTTC	3 cut(s)	163, 165, 960
HpyCH4III	ACNGT	3 cut(s)	191, 740, 767
HpyCH4IV	ACGT	4 cut(s)	21, 47, 907, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	2 cut(s)	588, 725
HpySE526I	ACGT	4 cut(s)	21, 47, 907, 934
Hsp92I	GRCGYC	2 cut(s)	47, 111
Hsp92II	CATG	2 cut(s)	104, 554
HspAI	GCGC	3 cut(s)	280, 607, 753
Kpn2I	TCCGGA	1 cut(s)	488
Kzo9I	GATC	7 cut(s)	151, 181, 615, 856, 899, 923, 982
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	3 cut(s)	100, 305, 535
Lsp1109I	GCAGC	3 cut(s)	732, 795, 903
LweI	GCATC	3 cut(s)	342, 361, 423
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	4 cut(s)	21, 47, 907, 934
MaeIII	GTNAC	3 cut(s)	298, 740, 866
MalI	GATC	7 cut(s)	153, 183, 617, 858, 901, 925, 984
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	7 cut(s)	151, 181, 615, 856, 899, 923, 982
MfeI	CAATTG	1 cut(s)	428
MflI	RGATCY	2 cut(s)	181, 615
MhlI	GDGCHC	3 cut(s)	124, 532, 844
MluCI	AATT	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	2 cut(s)	157, 630
MroI	TCCGGA	1 cut(s)	488
MseI	TTAA	2 cut(s)	270, 708
MspI	CCGG	2 cut(s)	69, 489
MspR9I	CCNGG	2 cut(s)	438, 808
MunI	CAATTG	1 cut(s)	428
MvaI	CCWGG	2 cut(s)	438, 808
MvnI	CGCG	2 cut(s)	44, 607
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeII	GATC	7 cut(s)	151, 181, 615, 856, 899, 923, 982
NlaIII	CATG	2 cut(s)	104, 554
NmuCI	GTSAC	3 cut(s)	298, 740, 866
NspV	TTCGAA	1 cut(s)	167
PagI	TCATGA	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	61, 164, 485
PkrI	GCNGC	4 cut(s)	8, 722, 785, 893
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
PpuMI	RGGWCCY	1 cut(s)	969
PsiI	TTATAA	2 cut(s)	135, 417
Psp124BI	GAGCTC	1 cut(s)	124
Psp1406I	AACGTT	1 cut(s)	907
Psp5II	RGGWCCY	1 cut(s)	969
Psp6I	CCWGG	2 cut(s)	436, 806
PspGI	CCWGG	2 cut(s)	436, 806
PspPI	GGNCC	1 cut(s)	969
PspPPI	RGGWCCY	1 cut(s)	969
PsuI	RGATCY	2 cut(s)	181, 615
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	270, 708
SatI	GCNGC	4 cut(s)	7, 721, 784, 892
Sau3AI	GATC	7 cut(s)	151, 181, 615, 856, 899, 923, 982
Sau96I	GGNCC	1 cut(s)	969
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	2 cut(s)	438, 808
SduI	GDGCHC	3 cut(s)	124, 532, 844
SfaNI	GCATC	3 cut(s)	342, 361, 423
SfcI	CTRYAG	2 cut(s)	687, 973
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	1 cut(s)	969
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	3 cut(s)	6, 9, 584
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	1 cut(s)	458
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	436, 806
StyI	CCWWGG	2 cut(s)	469, 629
TaaI	ACNGT	3 cut(s)	191, 740, 767
TaiI	ACGT	4 cut(s)	24, 50, 910, 937
TaqI	TCGA	6 cut(s)	78, 118, 167, 241, 749, 859
TaqII	GACCGA	1 cut(s)	936
TasI	AATT	1 cut(s)	428
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	61, 164, 485
Tru1I	TTAA	2 cut(s)	270, 708
Tru9I	TTAA	2 cut(s)	270, 708
TseFI	GTSAC	3 cut(s)	298, 740, 866
TseI	GCWGC	3 cut(s)	720, 783, 891
Tsp45I	GTSAC	3 cut(s)	298, 740, 866
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	4 cut(s)	96, 104, 242, 515
VpaK11BI	GGWCC	1 cut(s)	969
XspI	CTAG	1 cut(s)	458
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.