Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035009.1

Orthogroup ID

OG0009123

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2896

Gene Structure 2896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035009.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgtattactacattaatgtaccacccgatcattacaaggtcactagtgatggtgggagagtaaggaggaggaggaggatgaggaagacagaggcagtgttctacgcggatacgtaccatccgatccaagccggcagcatcgacggcaccgatactctccctcacgacagcgccgtctatcgagcctggctttgctcctccgccgccctctatgacccgtccggcgatcccaagctcatcggcgacccctactgcactctcttcgtcgcccgcctctctcccctcaccaccgaaaacactcttcgccaggctatgagcaagtatggtcgggttaagaacttgcgtttggtcaggcatattgtaaccggtgcctcgcgtggctatgctttcgttgagtatgaaactgaaagggagatgcggcgtggatacaaggaagctcaccattcccttgttgatgattatgaaattatcgtggattacaacagacagcagttgatgccaggatggattccaagacgattaggagggggttttggtggtaagaaggaatctggacaacttcgatttggaggacgagaaagaccatttcgagctcccattcgtatcccatatgatgatctggaaaaacttggaatcccacctccaccagaagggcgatacatgtcccggtatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034693 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

225

Amino Acids

25.96

Weight (kDa)

9.57

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43370 AT2G43370
fragaria_vesca	FvH4_4g12800 FvH4_4g12800 FvH4_4g12800
malus_domestica	MD03G1203000.v1.1 MD04G1022600.v1.1
prunus_persica	Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1
pyrus_communis	pycom04g01950
rosa_chinensis	RchiOBHm_Chr4g0412221 RchiOBHm_Chr4g0412301
rosa_laevigata	RLG00000008309
rosa_multiflora	Rmu_sc0023962.1_g000002 Rmu_sc0035009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356440
rosa_rugosa	Rorug04G0105200 Rorug04G0105200 Rorug04G0105300
rosa_samantha	Rh4CG182800
rosa_wichuraiana	Rw4G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccB1I	GGYRCC	2 cut(s)	146, 368
AccII	CGCG	2 cut(s)	107, 376
AciI	CCGC	5 cut(s)	107, 201, 204, 271, 418
AclWI	GGATC	2 cut(s)	118, 221
AfaI	GTAC	2 cut(s)	21, 116
AfiI	CCNNNNNNNGG	1 cut(s)	650
AflIII	ACRYGT	1 cut(s)	660
AgeI	ACCGGT	1 cut(s)	365
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	3 cut(s)	185, 306, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	235, 437, 593
AluI	AGCT	3 cut(s)	235, 437, 593
Alw21I	GWGCWC	1 cut(s)	595
AlwI	GGATC	2 cut(s)	118, 221
ApeKI	GCWGC	1 cut(s)	135
AseI	ATTAAT	1 cut(s)	15
AsiGI	ACCGGT	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	667
AsuHPI	GGTGA	2 cut(s)	277, 431
BanI	GGYRCC	2 cut(s)	146, 368
BanII	GRGCYC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	3 cut(s)	44, 126, 498
BceAI	ACGGC	2 cut(s)	158, 160
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciT130I	CCWGG	3 cut(s)	187, 308, 501
BciVI	GTATCC	3 cut(s)	103, 419, 614
BcnI	CCSGG	1 cut(s)	667
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	174
BfuI	GTATCC	3 cut(s)	103, 419, 614
BisI	GCNGC	3 cut(s)	136, 204, 419
BlsI	GCNGC	3 cut(s)	137, 205, 420
Bme1390I	CCNGG	4 cut(s)	187, 308, 501, 667
BmiI	GGNNCC	2 cut(s)	148, 370
BmrFI	CCNGG	4 cut(s)	187, 308, 501, 667
BmsI	GCATC	3 cut(s)	147, 405, 486
BpiI	GAAGAC	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	667
BsaAI	YACGTR	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse118I	RCCGGY	2 cut(s)	131, 365
BseBI	CCWGG	3 cut(s)	187, 308, 501
BseGI	GGATG	3 cut(s)	84, 118, 509
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseRI	GAGGAG	4 cut(s)	82, 85, 88, 187
BseXI	GCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	2 cut(s)	107, 376
BshNI	GGYRCC	2 cut(s)	146, 368
BshTI	ACCGGT	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	595
BsiSI	CCGG	4 cut(s)	132, 222, 366, 667
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	649
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp143I	GATC	4 cut(s)	28, 123, 226, 616
BspACI	CCGC	5 cut(s)	107, 201, 204, 271, 418
BspFNI	CGCG	2 cut(s)	107, 376
BspLI	GGNNCC	2 cut(s)	148, 370
BspPI	GGATC	2 cut(s)	118, 221
BspT107I	GGYRCC	2 cut(s)	146, 368
BsrFI	RCCGGY	2 cut(s)	131, 365
BssAI	RCCGGY	2 cut(s)	131, 365
BssMI	GATC	4 cut(s)	28, 123, 226, 616
Bst2UI	CCWGG	3 cut(s)	187, 308, 501
Bst6I	CTCTTC	2 cut(s)	266, 306
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	133, 271
BstF5I	GGATG	3 cut(s)	84, 118, 509
BstFNI	CGCG	2 cut(s)	107, 376
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	4 cut(s)	31, 126, 229, 619
BstMBI	GATC	4 cut(s)	28, 123, 226, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 496
BstNI	CCWGG	3 cut(s)	187, 308, 501
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	4 cut(s)	185, 306, 499, 665
BstSNI	TACGTA	1 cut(s)	114
BstUI	CGCG	2 cut(s)	107, 376
BstV1I	GCAGC	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	92
BsuI	GTATCC	3 cut(s)	103, 419, 614
BtsCI	GGATG	3 cut(s)	84, 118, 509
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	133, 271
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	2 cut(s)	131, 365
Csp6I	GTAC	2 cut(s)	20, 115
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	1 cut(s)	661
CviJI	RGCY	8 cut(s)	131, 185, 190, 235, 311, 381, 437, 593
CviKI_1	RGCY	8 cut(s)	131, 185, 190, 235, 311, 381, 437, 593
CviQI	GTAC	2 cut(s)	20, 115
DpnI	GATC	4 cut(s)	30, 125, 228, 618
DpnII	GATC	4 cut(s)	28, 123, 226, 616
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	266, 306
EarI	CTCTTC	2 cut(s)	266, 306
EciI	GGCGGA	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	593
Eco105I	TACGTA	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	595
Eco53kI	GAGCTC	1 cut(s)	593
EcoICRI	GAGCTC	1 cut(s)	593
EcoRII	CCWGG	3 cut(s)	185, 306, 499
EcoT38I	GRGCYC	1 cut(s)	595
FaeI	CATG	1 cut(s)	664
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	1 cut(s)	660
FauI	CCCGC	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	610
Fnu4HI	GCNGC	3 cut(s)	136, 204, 419
FokI	GGATG	3 cut(s)	91, 105, 516
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	3 cut(s)	136, 204, 419
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	3 cut(s)	136, 204, 419
HaeII	RGCGCY	1 cut(s)	174
HapII	CCGG	4 cut(s)	132, 222, 366, 667
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	664
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	3 cut(s)	508, 548, 633
HpaII	CCGG	4 cut(s)	132, 222, 366, 667
HphI	GGTGA	2 cut(s)	277, 431
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	3 cut(s)	164, 552, 620
Hpy99I	CGWCG	2 cut(s)	146, 269
HpyAV	CCTTC	2 cut(s)	538, 644
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 496
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	664
HspAI	GCGC	1 cut(s)	171
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	28, 123, 226, 616
LmnI	GCTCC	2 cut(s)	200, 598
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	3 cut(s)	147, 405, 486
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	40, 361
MalI	GATC	4 cut(s)	30, 125, 228, 618
MboI	GATC	4 cut(s)	28, 123, 226, 616
MboII	GAAGA	3 cut(s)	97, 253, 293
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	1 cut(s)	465
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	2 cut(s)	15, 333
MspI	CCGG	4 cut(s)	132, 222, 366, 667
MspR9I	CCNGG	4 cut(s)	187, 308, 501, 667
MvaI	CCWGG	3 cut(s)	187, 308, 501
MvnI	CGCG	2 cut(s)	107, 376
MwoI	GCNNNNNNNGC	2 cut(s)	144, 496
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	667
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	4 cut(s)	28, 123, 226, 616
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	2 cut(s)	148, 370
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	664
PciI	ACATGT	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	3 cut(s)	119, 147, 171
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	508, 548, 633
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	137, 205, 420
Ppu21I	YACGTR	1 cut(s)	114
PscI	ACATGT	1 cut(s)	660
PshBI	ATTAAT	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	595
Psp6I	CCWGG	3 cut(s)	185, 306, 499
PspGI	CCWGG	3 cut(s)	185, 306, 499
PspN4I	GGNNCC	2 cut(s)	148, 370
RsaI	GTAC	2 cut(s)	21, 116
RsaNI	GTAC	2 cut(s)	20, 115
SacI	GAGCTC	1 cut(s)	595
SaqAI	TTAA	2 cut(s)	15, 333
SatI	GCNGC	3 cut(s)	136, 204, 419
Sau3AI	GATC	4 cut(s)	28, 123, 226, 616
ScrFI	CCNGG	4 cut(s)	187, 308, 501, 667
SduI	GDGCHC	1 cut(s)	595
SetI	ASST	6 cut(s)	42, 116, 237, 439, 595, 643
SfaNI	GCATC	3 cut(s)	147, 405, 486
SnaBI	TACGTA	1 cut(s)	114
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	1 cut(s)	465
SsiI	CCGC	5 cut(s)	107, 201, 204, 271, 418
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	595
StyD4I	CCNGG	4 cut(s)	185, 306, 499, 665
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	4 cut(s)	141, 181, 562, 589
TasI	AATT	1 cut(s)	465
TauI	GCSGC	2 cut(s)	206, 421
TfiI	GAWTC	3 cut(s)	508, 548, 633
Tru1I	TTAA	2 cut(s)	15, 333
Tru9I	TTAA	2 cut(s)	15, 333
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	414, 477
TspRI	CASTG	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	15
XceI	RCATGY	1 cut(s)	664
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.