Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009123

Physical Location & Seq

Genomic Coordinates Forward (+)

16308179 .. 16313209

Gene Structure 5031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0105200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2664 bp

ATGGGATGTTCTACATCTAAGCTAGATGATGAAGAAGCAGTTCAACTTTGTAAAGATCGAAAGAGATTTATTAAACAGGCTCTCGAACAAAGAGCACGATTTGCATCTGGACACTTGGCCTATATCCAGTCCCTGAAAAGAGTTTCGGCTGCTCTTCGTGACTATATTGAAGTGGATGAGCCTCATGTGTTCTCATTAGAATCCTTCATAACCCCACCATTCACACCAATAAAGAAAACAAGTCCTGGTTTTATCTGTGACAGTACACCTAAGATCAGGAGGATTTCATCAAAATCCTTCTCACCTGCACAAACCCAATCCGAACCCCATTCATCTGTGAAGGTACATTACCTAAGATCAGGAGGAAATCCGGCAGTGTCAGTGGAAGAGAGACCACCTCAATCATCGGAGACAGTCAGTGGAAGTCCTGGTTTTATCTGTGACGGTACACCTAAGATCAGGAGGATTTCATCAAAATCCTTCTCACCTGCACAAACCCAATCCGAACCCCATTCATCTGTGAAGGTACATTGCCTAAGATCAGGAGGAAATCCGGCAGTGTCAGTGGAAGAGAGACCACCACAATCATCGGAGACAGTCAGTGGAAGTCCTGGTTTTATCTGTGACAGTACACCTAAGATCAGGAGGATTTCATCAAAATCCTTCTCACCTGCACAAACCCAATCCGAACCCCATTCATCTGTGAAGGTACATTGCCTAAGATCAGGAGGAAATCCGGCAGTGTCAGTGGAAGAGAGACCCCCTCAATCACCAGAGACGGTCAGAGTAGAAACTTACTCTCCAGTACACCAGTTTGGAATGGATGGTTTCTTTGCAATGCAATCTTCGCCAATGAATTCTTCTTCATTCTTCTCCTATTCCCCTAACAACAGGCCCAATATCCCTCCACCTTCACCTCAAAACTCTCAATGGGATTTTTTCTGGAACCCATTTTCATCATTAGATTACTATGGTTATCCCACTCCATCTAGTATTGATCAGACAGTCATGGATGATGAGAATAGAGGACTAAGGCAGGTCAGAGAAGAAGAAGGGATCCCTGACTTGGAAGAAATTGAAACTGAGCAAGAGGATTGCTATGATGAGGTAAATGTAAGACAAGAAAGGGATAAAATGGATCTAAACTACAACAGAGAAGAAGTTATTGTTGAAGATGTTGATGATGAGGAGGATGAGGATGAGGAGACGGTCAGCGGAAACGAAACTGAGCATGAAGCAGAAATACCCTCCCATGATCATGTTACTATAGAGGTGCGAGCTCAGACTGCAAGACAAGTTGAAACTAGTAATCAAGGAACGGCAGTTGTTGATCGAGAGGCCAAGGAAGAAACACCAGGATTTACTGTTTATGTAAACCGAAGGCCAACGAGTATGGCAGAAGTTATCAAGGATTTAGAAGATCAGTTTGTGATCGTTTGCAATGCAGCCAATCAGGTCTCGGCGTTGTTAGAGGCCAACAGAGAGCAGTACTCATCAACCTCCAATGAACTCTCAGCCATGAAAATGCTGAACCCAGTAGCTTTATTTCGCTCAGCATCCTCGTCTCGCTCAGCCTCATCCAGATTTTTAGTGACTTCTTCCTGCTCCAAAGATGAAGGTTATGAAAGCAGCAGTGACTTCTCAGAGGAGCCCTGCATGTTTTCAGGTAGTCACCAATCAACATTGGACAGATTGTATGCTTGGGAGAAGAAACTCTATGAGGAAGTCAAGTCTGGAGAAAAGGTTCGGATGACATATGACAAGAAATTAAAGCAACTCCGGAACCAAGATGTAAAAGGCGATGACCAATCTGCTCTAGAAAAAACAAGGGTATCCATTAGAGATCTGCATACGCAGATGAAGGTTTCGATACACTCAGTTGAAGCTATTTCAAAGAGAATTGAATCCTTAAGGGATGAAGAACTGCAGCCTCAACTTTCAGAATTGGTGCAAGGGTTGGCAAGGATGTGGAAAGTAATGGCAGAGTGTCATCAGACACAGAAACGAAGCCTCGATGAAGCCAAGCTTTTACTAGCAGGCACACCTTCAAAACTGGAAGCTAAAAGGCTTTCTTCTTCCAGTTCAGTCACTGATCCAAACCGGCTAGCACGTTCTGCAGCCAATCTTGAGACCGAACTGAGGAATTGGAGAGCCTATTTTGAGTCATGGATCACTTCTCAGCGATCCTACGTACGCGCATTAACAGGATGGCTTCTCCGTTGCATGAGGGCTGATCCAGATACATCAAAGTTGCCATTCTCTCCTCGTCGCTCTAACGGTGCTCCTCCAATATTTGGAATATGCATCCAATGGTCAAGGTTTCTAGATGCCATACGTGAGACCCCAGTGCTAGATGGACTAGATTTTTTTGCAGCTGGTATGGGATCTCTCTATGCACAGCAGGTTAAAGAGGATTTACGTAGAGCTCGGATAGGTTCAAAGAGGTTCGAGTCAACTGAGGAATTCAGTGGGAATATGGAACTGGTGGAAGTTGGTCAAGTTGAACAAGTAATGACTGCAGATAAAATGGCTGAAGTTGCCATAAGGGTACTTTGTGCTGGAATGTCAGTTACTATGAGCTCACTGACAGAGTTTTCTATTGCTTCTGCTGAGGGGTATGCTGATCTTGTGAATCAATGGGACGATGCCAAGACTAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034693 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

887

Amino Acids

99.35

Weight (kDa)

5.27

Isoelectric Point (pI)

65.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	1 - 58	1.2e-26	Protein of unknown function (DUF630)
DUF632	PF04782	465 - 794	1.2e-106	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43370 AT2G43370
fragaria_vesca	FvH4_4g12800 FvH4_4g12800 FvH4_4g12800
malus_domestica	MD03G1203000.v1.1 MD04G1022600.v1.1
prunus_persica	Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1
pyrus_communis	pycom04g01950
rosa_chinensis	RchiOBHm_Chr4g0412221 RchiOBHm_Chr4g0412301
rosa_laevigata	RLG00000008309
rosa_multiflora	Rmu_sc0023962.1_g000002 Rmu_sc0035009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356440
rosa_rugosa	Rorug04G0105200 Rorug04G0105200 Rorug04G0105300
rosa_samantha	Rh4CG182800
rosa_wichuraiana	Rw4G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	313, 496, 679
Acc36I	ACCTGC	5 cut(s)	313, 496, 679, 1027, 2392
AccB7I	CCANNNNNTGG	1 cut(s)	2294
AccII	CGCG	1 cut(s)	2196
AccIII	TCCGGA	1 cut(s)	1779
AciI	CCGC	1 cut(s)	1215
AclWI	GGATC	8 cut(s)	1051, 1064, 1146, 2087, 2177, 2178, 2228, 2392
AcsI	RAATTY	2 cut(s)	856, 2462
AcuI	CTGAAG	1 cut(s)	2553
AfiI	CCNNNNNNNGG	3 cut(s)	1066, 2139, 2294
AflII	CTTAAG	1 cut(s)	1909
AhlI	ACTAGT	1 cut(s)	1304
AjnI	CCWGG	4 cut(s)	244, 427, 610, 1354
AjuI	GAANNNNNNNTTGG	2 cut(s)	844, 876
AloI	GAACNNNNNNTCC	2 cut(s)	1728, 1760
Alw21I	GWGCWC	5 cut(s)	97, 1282, 2284, 2428, 2582
AlwI	GGATC	8 cut(s)	1051, 1064, 1146, 2087, 2177, 2178, 2228, 2392
AlwNI	CAGNNNCTG	2 cut(s)	133, 2090
Aor13HI	TCCGGA	1 cut(s)	1779
AoxI	GGCC	5 cut(s)	117, 893, 1338, 1382, 1473
ApeKI	GCWGC	6 cut(s)	149, 1445, 1629, 1927, 2117, 2372
ApoI	RAATTY	2 cut(s)	856, 2462
Asp700I	GAANNNNTTC	2 cut(s)	39, 1743
AspLEI	GCGC	1 cut(s)	2198
AspS9I	GGNCC	1 cut(s)	894
AsuHPI	GGTGA	6 cut(s)	294, 477, 660, 762, 906, 1664
AsuNHI	GCTAGC	1 cut(s)	2104
BaeI	ACNNNNGTAYC	2 cut(s)	1815, 1848
BamHI	GGATCC	1 cut(s)	1056
BanII	GRGCYC	4 cut(s)	1282, 1653, 2428, 2582
BarI	GAAGNNNNNNTAC	4 cut(s)	332, 364, 1227, 1259
Bbv12I	GWGCWC	5 cut(s)	97, 1282, 2284, 2428, 2582
BbvCI	CCTCAGC	1 cut(s)	2610
BbvI	GCAGC	6 cut(s)	136, 1457, 1641, 1939, 2129, 2384
BccI	CCATC	4 cut(s)	818, 994, 2202, 2348
BceAI	ACGGC	1 cut(s)	1335
BciT130I	CCWGG	4 cut(s)	246, 429, 612, 1356
BciVI	GTATCC	1 cut(s)	1843
BclI	TGATCA	2 cut(s)	997, 1255
BcuI	ACTAGT	1 cut(s)	1304
BfmI	CTRYAG	4 cut(s)	1266, 1925, 2115, 2517
BfrI	CTTAAG	1 cut(s)	1909
BfuAI	ACCTGC	5 cut(s)	313, 496, 679, 1027, 2392
BfuI	GTATCC	1 cut(s)	1843
BglII	AGATCT	1 cut(s)	1843
BisI	GCNGC	6 cut(s)	150, 1446, 1630, 1928, 2118, 2373
BlpI	GCTNAGC	2 cut(s)	1552, 1570
BlsI	GCNGC	6 cut(s)	151, 1447, 1631, 1929, 2119, 2374
BmcAI	AGTACT	1 cut(s)	1490
Bme1390I	CCNGG	4 cut(s)	246, 429, 612, 1356
BmgT120I	GGNCC	1 cut(s)	894
BmiI	GGNNCC	4 cut(s)	947, 1058, 1650, 1784
BmrFI	CCNGG	4 cut(s)	246, 429, 612, 1356
BmrI	ACTGGG	2 cut(s)	1529, 2339
BmsI	GCATC	5 cut(s)	113, 1565, 2313, 2317, 2635
BmtI	GCTAGC	1 cut(s)	2108
BmuI	ACTGGG	2 cut(s)	1529, 2339
BplI	GAGNNNNNCTC	6 cut(s)	382, 414, 748, 780, 1475, 1507
BpmI	CTGGAG	2 cut(s)	786, 1755
Bpu10I	CCTNAGC	1 cut(s)	2610
Bpu1102I	GCTNAGC	2 cut(s)	1552, 1570
BpuEI	CTTGAG	1 cut(s)	2147
BsaAI	YACGTR	3 cut(s)	2191, 2336, 2420
BsaBI	GATNNNNATC	1 cut(s)	103
BsaI	GGTCTC	6 cut(s)	385, 568, 751, 1462, 2123, 2333
BsaJI	CCNNGG	1 cut(s)	1341
BsaWI	WCCGGW	1 cut(s)	1779
BsaXI	ACNNNNNCTCC	4 cut(s)	784, 814, 1728, 1758
Bsc4I	CCNNNNNNNGG	3 cut(s)	1066, 2139, 2294
Bse118I	RCCGGY	1 cut(s)	2100
Bse1I	ACTGG	8 cut(s)	127, 803, 811, 1535, 2058, 2079, 2345, 2487
Bse3DI	GCAATG	4 cut(s)	529, 712, 843, 1447
Bse8I	GATNNNNATC	1 cut(s)	103
BseAI	TCCGGA	1 cut(s)	1779
BseBI	CCWGG	4 cut(s)	246, 429, 612, 1356
BseDI	CCNNGG	1 cut(s)	1341
BseJI	GATNNNNATC	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	1066, 2139, 2294
BseMI	GCAATG	4 cut(s)	529, 712, 843, 1447
BseNI	ACTGG	8 cut(s)	127, 803, 811, 1535, 2058, 2079, 2345, 2487
BseRI	GAGGAG	5 cut(s)	1202, 1217, 1661, 2253, 2274
BseXI	GCAGC	6 cut(s)	136, 1457, 1641, 1939, 2129, 2384
BsgI	GTGCAG	3 cut(s)	291, 474, 657
Bsh1236I	CGCG	1 cut(s)	2196
BshFI	GGCC	5 cut(s)	119, 895, 1340, 1384, 1475
BsiHKAI	GWGCWC	5 cut(s)	97, 1282, 2284, 2428, 2582
BsiSI	CCGG	5 cut(s)	371, 554, 737, 1780, 2101
BsiWI	CGTACG	1 cut(s)	2191
BslFI	GGGAC	2 cut(s)	115, 2654
BslI	CCNNNNNNNGG	3 cut(s)	1066, 2139, 2294
BsmBI	CGTCTC	3 cut(s)	770, 1199, 1569
BsmFI	GGGAC	2 cut(s)	115, 2654
BsnI	GGCC	5 cut(s)	119, 895, 1340, 1384, 1475
Bso31I	GGTCTC	6 cut(s)	385, 568, 751, 1462, 2123, 2333
Bsp1286I	GDGCHC	6 cut(s)	97, 1282, 1653, 2284, 2428, 2582
Bsp13I	TCCGGA	1 cut(s)	1779
Bsp1720I	GCTNAGC	2 cut(s)	1552, 1570
BspACI	CCGC	1 cut(s)	1215
BspANI	GGCC	5 cut(s)	119, 895, 1340, 1384, 1475
BspEI	TCCGGA	1 cut(s)	1779
BspFNI	CGCG	1 cut(s)	2196
BspLI	GGNNCC	4 cut(s)	947, 1058, 1650, 1784
BspMAI	CTGCAG	3 cut(s)	1929, 2119, 2521
BspMI	ACCTGC	5 cut(s)	313, 496, 679, 1027, 2392
BspOI	GCTAGC	1 cut(s)	2108
BspPI	GGATC	8 cut(s)	1051, 1064, 1146, 2087, 2177, 2178, 2228, 2392
BspQI	GCTCTTC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	1909
BspTNI	GGTCTC	6 cut(s)	385, 568, 751, 1462, 2123, 2333
BsrDI	GCAATG	4 cut(s)	529, 712, 843, 1447
BsrFI	RCCGGY	1 cut(s)	2100
BsrI	ACTGG	8 cut(s)	127, 803, 811, 1535, 2058, 2079, 2345, 2487
BssAI	RCCGGY	1 cut(s)	2100
BssECI	CCNNGG	1 cut(s)	1341
BssT1I	CCWWGG	1 cut(s)	1341
Bst2UI	CCWGG	4 cut(s)	246, 429, 612, 1356
Bst6I	CTCTTC	4 cut(s)	159, 381, 564, 747
BstAFI	CTTAAG	1 cut(s)	1909
BstAPI	GCANNNNNTGC	2 cut(s)	101, 2114
BstBAI	YACGTR	3 cut(s)	2191, 2336, 2420
BstC8I	GCNNGC	3 cut(s)	1278, 2038, 2106
BstFNI	CGCG	1 cut(s)	2196
BstHHI	GCGC	1 cut(s)	2198
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 847, 1286, 2114, 2537
BstNI	CCWGG	4 cut(s)	246, 429, 612, 1356
BstNSI	RCATGY	1 cut(s)	1660
BstSCI	CCNGG	4 cut(s)	244, 427, 610, 1354
BstSFI	CTRYAG	4 cut(s)	1266, 1925, 2115, 2517
BstSNI	TACGTA	2 cut(s)	2191, 2420
BstUI	CGCG	1 cut(s)	2196
BstV1I	GCAGC	6 cut(s)	136, 1457, 1641, 1939, 2129, 2384
BstX2I	RGATCY	4 cut(s)	1056, 1138, 1843, 2384
BstYI	RGATCY	4 cut(s)	1056, 1138, 1843, 2384
BsuI	GTATCC	1 cut(s)	1843
BsuRI	GGCC	5 cut(s)	119, 895, 1340, 1384, 1475
BtgZI	GCGATG	1 cut(s)	1815
BtsI	GCAGTG	4 cut(s)	381, 564, 747, 1639
BveI	ACCTGC	5 cut(s)	313, 496, 679, 1027, 2392
Cac8I	GCNNGC	3 cut(s)	1278, 2038, 2106
CaiI	CAGNNNCTG	2 cut(s)	133, 2090
CfoI	GCGC	1 cut(s)	2198
Cfr10I	RCCGGY	1 cut(s)	2100
Cfr13I	GGNCC	1 cut(s)	894
CviAII	CATG	9 cut(s)	185, 1009, 1232, 1253, 1259, 1519, 1657, 2166, 2224
Eam1104I	CTCTTC	4 cut(s)	159, 381, 564, 747
EarI	CTCTTC	4 cut(s)	159, 381, 564, 747
Ecl136II	GAGCTC	3 cut(s)	1280, 2426, 2580
Eco105I	TACGTA	2 cut(s)	2191, 2420
Eco130I	CCWWGG	1 cut(s)	1341
Eco24I	GRGCYC	4 cut(s)	1282, 1653, 2428, 2582
Eco31I	GGTCTC	6 cut(s)	385, 568, 751, 1462, 2123, 2333
Eco53kI	GAGCTC	3 cut(s)	1280, 2426, 2580
Eco57I	CTGAAG	1 cut(s)	2553
EcoICRI	GAGCTC	3 cut(s)	1280, 2426, 2580
EcoRI	GAATTC	2 cut(s)	856, 2462
EcoRII	CCWGG	4 cut(s)	244, 427, 610, 1354
EcoT14I	CCWWGG	1 cut(s)	1341
EcoT22I	ATGCAT	1 cut(s)	2306
EcoT38I	GRGCYC	4 cut(s)	1282, 1653, 2428, 2582
ErhI	CCWWGG	1 cut(s)	1341
Esp3I	CGTCTC	3 cut(s)	770, 1199, 1569
FaeI	CATG	9 cut(s)	188, 1012, 1235, 1256, 1262, 1522, 1660, 2169, 2227
FalI	AAGNNNNNCTT	4 cut(s)	2010, 2042, 2056, 2088
FaqI	GGGAC	2 cut(s)	115, 2654
FatI	CATG	9 cut(s)	184, 1008, 1231, 1252, 1258, 1518, 1656, 2165, 2223
FauNDI	CATATG	1 cut(s)	1756
FbaI	TGATCA	2 cut(s)	997, 1255
Fnu4HI	GCNGC	6 cut(s)	150, 1446, 1630, 1928, 2118, 2373
FriOI	GRGCYC	4 cut(s)	1282, 1653, 2428, 2582
Fsp4HI	GCNGC	6 cut(s)	150, 1446, 1630, 1928, 2118, 2373
GlaI	GCGC	1 cut(s)	2197
GluI	GCNGC	6 cut(s)	150, 1446, 1630, 1928, 2118, 2373
GsuI	CTGGAG	2 cut(s)	786, 1755
HaeIII	GGCC	5 cut(s)	119, 895, 1340, 1384, 1475
HapII	CCGG	5 cut(s)	371, 554, 737, 1780, 2101
HhaI	GCGC	1 cut(s)	2198
Hin1II	CATG	9 cut(s)	188, 1012, 1235, 1256, 1262, 1522, 1660, 2169, 2227
Hin6I	GCGC	1 cut(s)	2196
HinP1I	GCGC	1 cut(s)	2196
HincII	GTYRAC	1 cut(s)	2454
HindII	GTYRAC	1 cut(s)	2454
HindIII	AAGCTT	1 cut(s)	2024
HinfI	GANTC	5 cut(s)	200, 1904, 2162, 2450, 2632
HpaII	CCGG	5 cut(s)	371, 554, 737, 1780, 2101
HphI	GGTGA	6 cut(s)	294, 477, 660, 762, 906, 1664
Hpy166II	GTNNAC	6 cut(s)	266, 449, 632, 808, 1375, 2454
Hpy8I	GTNNAC	6 cut(s)	266, 449, 632, 808, 1375, 2454
Hpy99I	CGWCG	1 cut(s)	2271
HpyCH4IV	ACGT	4 cut(s)	2110, 2190, 2335, 2419
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 847, 1286, 2114, 2537
HpySE526I	ACGT	4 cut(s)	2110, 2190, 2335, 2419
Hsp92II	CATG	9 cut(s)	188, 1012, 1235, 1256, 1262, 1522, 1660, 2169, 2227
HspAI	GCGC	1 cut(s)	2196
Kpn2I	TCCGGA	1 cut(s)	1779
Ksp22I	TGATCA	2 cut(s)	997, 1255
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	3 cut(s)	1610, 1648, 2287
Lsp1109I	GCAGC	6 cut(s)	136, 1457, 1641, 1939, 2129, 2384
LweI	GCATC	5 cut(s)	113, 1565, 2313, 2317, 2635
MaeII	ACGT	4 cut(s)	2110, 2190, 2335, 2419
MflI	RGATCY	4 cut(s)	1056, 1138, 1843, 2384
MhlI	GDGCHC	6 cut(s)	97, 1282, 1653, 2284, 2428, 2582
MluCI	AATT	7 cut(s)	856, 1074, 1766, 1899, 1943, 2143, 2462
MlyI	GAGTC	2 cut(s)	2171, 2459
Mph1103I	ATGCAT	1 cut(s)	2306
MroI	TCCGGA	1 cut(s)	1779
MroXI	GAANNNNTTC	2 cut(s)	39, 1743
MseI	TTAA	5 cut(s)	72, 1769, 1910, 2201, 2406
MslI	CAYNNNNRTG	2 cut(s)	1257, 1523
MspA1I	CMGCKG	2 cut(s)	1215, 2375
MspCI	CTTAAG	1 cut(s)	1909
MspI	CCGG	5 cut(s)	371, 554, 737, 1780, 2101
MspR9I	CCNGG	4 cut(s)	246, 429, 612, 1356
MvaI	CCWGG	4 cut(s)	246, 429, 612, 1356
MvnI	CGCG	1 cut(s)	2196
MwoI	GCNNNNNNNGC	5 cut(s)	101, 847, 1286, 2114, 2537
NdeI	CATATG	1 cut(s)	1756
NheI	GCTAGC	1 cut(s)	2104
NlaIII	CATG	9 cut(s)	188, 1012, 1235, 1256, 1262, 1522, 1660, 2169, 2227
NlaIV	GGNNCC	4 cut(s)	947, 1058, 1650, 1784
NmeAIII	GCCGAG	1 cut(s)	1439
NmuCI	GTSAC	8 cut(s)	158, 257, 440, 623, 1591, 1634, 1670, 2086
NsiI	ATGCAT	1 cut(s)	2306
NspI	RCATGY	1 cut(s)	1660
PaqCI	CACCTGC	3 cut(s)	313, 496, 679
PciSI	GCTCTTC	1 cut(s)	159
PdmI	GAANNNNTTC	2 cut(s)	39, 1743
PfeI	GAWTC	3 cut(s)	200, 1904, 2632
Pfl23II	CGTACG	1 cut(s)	2191
PflMI	CCANNNNNTGG	1 cut(s)	2294
PkrI	GCNGC	6 cut(s)	151, 1447, 1631, 1929, 2119, 2374
PleI	GAGTC	2 cut(s)	2170, 2458
PpsI	GAGTC	2 cut(s)	2170, 2458
Ppu21I	YACGTR	3 cut(s)	2191, 2336, 2420
Psp124BI	GAGCTC	3 cut(s)	1282, 2428, 2582
Psp6I	CCWGG	4 cut(s)	244, 427, 610, 1354
PspGI	CCWGG	4 cut(s)	244, 427, 610, 1354
PspLI	CGTACG	1 cut(s)	2191
PspN4I	GGNNCC	4 cut(s)	947, 1058, 1650, 1784
PspPI	GGNCC	1 cut(s)	894
PstI	CTGCAG	3 cut(s)	1929, 2119, 2521
PstNI	CAGNNNCTG	2 cut(s)	133, 2090
PsuI	RGATCY	4 cut(s)	1056, 1138, 1843, 2384
PvuII	CAGCTG	1 cut(s)	2375
RseI	CAYNNNNRTG	2 cut(s)	1257, 1523
SacI	GAGCTC	3 cut(s)	1282, 2428, 2582
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	5 cut(s)	72, 1769, 1910, 2201, 2406
SatI	GCNGC	6 cut(s)	150, 1446, 1630, 1928, 2118, 2373
Sau96I	GGNCC	1 cut(s)	894
ScaI	AGTACT	1 cut(s)	1490
SchI	GAGTC	2 cut(s)	2171, 2459
ScrFI	CCNGG	4 cut(s)	246, 429, 612, 1356
SduI	GDGCHC	6 cut(s)	97, 1282, 1653, 2284, 2428, 2582
SfaNI	GCATC	5 cut(s)	113, 1565, 2313, 2317, 2635
SfcI	CTRYAG	4 cut(s)	1266, 1925, 2115, 2517
SmiMI	CAYNNNNRTG	2 cut(s)	1257, 1523
SmlI	CTYRAG	2 cut(s)	1909, 2126
SmoI	CTYRAG	2 cut(s)	1909, 2126
SnaBI	TACGTA	2 cut(s)	2191, 2420
SpeI	ACTAGT	1 cut(s)	1304
Sse9I	AATT	7 cut(s)	856, 1074, 1766, 1899, 1943, 2143, 2462
SsiI	CCGC	1 cut(s)	1215
SspI	AATATT	1 cut(s)	2292
SstI	GAGCTC	3 cut(s)	1282, 2428, 2582
StyD4I	CCNGG	4 cut(s)	244, 427, 610, 1354
StyI	CCWWGG	1 cut(s)	1341
TaiI	ACGT	4 cut(s)	2113, 2193, 2338, 2422
TaqI	TCGA	6 cut(s)	58, 84, 1333, 1868, 2013, 2448
TaqII	GACCGA	1 cut(s)	2147
TasI	AATT	7 cut(s)	856, 1074, 1766, 1899, 1943, 2143, 2462
TatI	WGTACW	4 cut(s)	263, 629, 805, 1488
TfiI	GAWTC	3 cut(s)	200, 1904, 2632
Tru1I	TTAA	5 cut(s)	72, 1769, 1910, 2201, 2406
Tru9I	TTAA	5 cut(s)	72, 1769, 1910, 2201, 2406
TseFI	GTSAC	8 cut(s)	158, 257, 440, 623, 1591, 1634, 1670, 2086
TseI	GCWGC	6 cut(s)	149, 1445, 1629, 1927, 2117, 2372
Tsp45I	GTSAC	8 cut(s)	158, 257, 440, 623, 1591, 1634, 1670, 2086
TspGWI	ACGGA	1 cut(s)	2207
Van91I	CCANNNNNTGG	1 cut(s)	2294
Vha464I	CTTAAG	1 cut(s)	1909
XapI	RAATTY	2 cut(s)	856, 2462
XbaI	TCTAGA	2 cut(s)	1816, 2323
XceI	RCATGY	1 cut(s)	1660
XmnI	GAANNNNTTC	2 cut(s)	39, 1743
ZrmI	AGTACT	1 cut(s)	1490
Zsp2I	ATGCAT	1 cut(s)	2306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.