Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009123

Physical Location & Seq

Genomic Coordinates Reverse (-)

1724838 .. 1726829

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGTGGGGGCGGACGAAACGTGAACGGAAACTTAAACGCGGTGTTCTACTCGGAGGCGTATCATCCGATTCAGGCGGGAAGCATAGACGGCACCGACACTCTCCCTCACGACAACGCCGTCTACCGAGCCTTCCTCTGCTCCTCCGCTGGCCTCTATGACCCCCTGGGCGACCCCAAGCTCCTCGGCGATCCTTATTGCACTCTCTTCGTTGGTCACCTTTCTCATCTCACTACCGAACGCACTCTTCGCAAGGCTATGAGCAAGTACGGTCGGGTCAAAAGCTTGCGCTTGGTCAGGCACATTGTAACTGGTGCTTCGCGCGGATATGCTTTTGTTGAATATGAAAGCGAAGGGGAGATGCAGCGTGCATATAAGGAAGCTCACCATTCCTTGATTGATGATTCTAAAGTTATTGTTGATTACAACAGACAGCAGTTGATGCCAGGGTGGATTCCAAGAAGATTAGGAGGTGGTTTCTGTGGTAAGAAGGAATCTGGACAGCTTCGTTTTGGAGGACGAGAAAAACCATTTCGAGCTCCCCTGCGTCCAATCCCATATGACGAGCTGGAGAGACTTGGGATCGATCACCACCTCCACCAGAAGGAAGATACATGTCACCCTATCAGGTCCCGTCCCCACCTAGAAGGAAAAGGAGCTCCATGGATAGAGAAGAAAGTACCCATAAAAGGTCCATGGACAGGGAAGCGAACATGTGCAAAAGTAGTCCTGTGGAGAAGGAAGAAAGGTTTTACAAAAGATCTATTGACCCAGAGGACAGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034693 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

263

Amino Acids

29.59

Weight (kDa)

9.68

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43370 AT2G43370
fragaria_vesca	FvH4_4g12800 FvH4_4g12800 FvH4_4g12800
malus_domestica	MD03G1203000.v1.1 MD04G1022600.v1.1
prunus_persica	Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1
pyrus_communis	pycom04g01950
rosa_chinensis	RchiOBHm_Chr4g0412221 RchiOBHm_Chr4g0412301
rosa_laevigata	RLG00000008309
rosa_multiflora	Rmu_sc0023962.1_g000002 Rmu_sc0035009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356440
rosa_rugosa	Rorug04G0105200 Rorug04G0105200 Rorug04G0105300
rosa_samantha	Rh4CG182800
rosa_wichuraiana	Rw4G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	3 cut(s)	41, 322, 324
AciI	CCGC	5 cut(s)	12, 41, 77, 147, 324
AclWI	GGATC	2 cut(s)	185, 590
AfaI	GTAC	2 cut(s)	269, 681
AfiI	CCNNNNNNNGG	3 cut(s)	604, 689, 701
AflIII	ACRYGT	2 cut(s)	614, 713
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	165, 445
AluBI	AGCT	7 cut(s)	181, 285, 383, 505, 539, 568, 659
AluI	AGCT	7 cut(s)	181, 285, 383, 505, 539, 568, 659
Alw21I	GWGCWC	2 cut(s)	541, 661
Alw26I	GTCTC	1 cut(s)	568
AlwI	GGATC	2 cut(s)	185, 590
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	364
AspLEI	GCGC	2 cut(s)	291, 324
AspS9I	GGNCC	2 cut(s)	630, 692
AsuHPI	GGTGA	4 cut(s)	209, 377, 581, 611
AvaII	GGWCC	2 cut(s)	630, 692
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	541, 661
Bbv12I	GWGCWC	2 cut(s)	541, 661
BbvI	GCAGC	1 cut(s)	376
BceAI	ACGGC	2 cut(s)	104, 106
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	2 cut(s)	167, 447
BcoDI	GTCTC	1 cut(s)	568
BfaI	CTAG	1 cut(s)	644
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	2 cut(s)	167, 447
Bme18I	GGWCC	2 cut(s)	630, 692
BmgT120I	GGNCC	2 cut(s)	630, 692
BmiI	GGNNCC	2 cut(s)	94, 632
BmrFI	CCNGG	2 cut(s)	167, 447
BmsI	GCATC	2 cut(s)	351, 432
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	590
Bsa29I	ATCGAT	1 cut(s)	585
BsaJI	CCNNGG	6 cut(s)	165, 166, 184, 446, 662, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	604, 689, 701
Bse1I	ACTGG	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	167, 447
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	6 cut(s)	165, 166, 184, 446, 662, 695
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	3 cut(s)	604, 689, 701
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	2 cut(s)	133, 173
BseXI	GCAGC	1 cut(s)	376
Bsh1236I	CGCG	3 cut(s)	41, 322, 324
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	92
BshVI	ATCGAT	1 cut(s)	585
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	541, 661
BslFI	GGGAC	2 cut(s)	616, 621
BslI	CCNNNNNNNGG	3 cut(s)	604, 689, 701
BsmAI	GTCTC	1 cut(s)	568
BsmFI	GGGAC	2 cut(s)	616, 621
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	541, 661
Bsp143I	GATC	4 cut(s)	190, 582, 586, 760
Bsp19I	CCATGG	2 cut(s)	662, 695
BspACI	CCGC	5 cut(s)	12, 41, 77, 147, 324
BspANI	GGCC	1 cut(s)	153
BspDI	ATCGAT	1 cut(s)	585
BspFNI	CGCG	3 cut(s)	41, 322, 324
BspLI	GGNNCC	2 cut(s)	94, 632
BspPI	GGATC	2 cut(s)	185, 590
BspT107I	GGYRCC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	6 cut(s)	165, 166, 184, 446, 662, 695
BssMI	GATC	4 cut(s)	190, 582, 586, 760
BssT1I	CCWWGG	2 cut(s)	662, 695
Bst2UI	CCWGG	2 cut(s)	167, 447
Bst4CI	ACNGT	2 cut(s)	272, 781
Bst6I	CTCTTC	2 cut(s)	212, 252
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	151, 287, 369
BstDSI	CCRYGG	2 cut(s)	662, 695
BstEII	GGTNACC	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	64
BstFNI	CGCG	3 cut(s)	41, 322, 324
BstHHI	GCGC	2 cut(s)	291, 324
BstKTI	GATC	4 cut(s)	193, 585, 589, 763
BstMAI	GTCTC	1 cut(s)	568
BstMBI	GATC	4 cut(s)	190, 582, 586, 760
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 249, 442
BstNI	CCWGG	2 cut(s)	167, 447
BstNSI	RCATGY	2 cut(s)	618, 717
BstPI	GGTNACC	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	165, 445
BstUI	CGCG	3 cut(s)	41, 322, 324
BstV1I	GCAGC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
Bsu15I	ATCGAT	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	585
BtgI	CCRYGG	2 cut(s)	662, 695
BtsCI	GGATG	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	151, 287, 369
CfoI	GCGC	2 cut(s)	291, 324
Cfr13I	GGNCC	2 cut(s)	630, 692
ClaI	ATCGAT	1 cut(s)	585
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	2 cut(s)	268, 680
CviAII	CATG	4 cut(s)	615, 663, 696, 714
CviQI	GTAC	2 cut(s)	268, 680
DpnI	GATC	4 cut(s)	192, 584, 588, 762
DpnII	GATC	4 cut(s)	190, 582, 586, 760
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	212, 252
EarI	CTCTTC	2 cut(s)	212, 252
EciI	GGCGGA	1 cut(s)	27
Ecl136II	GAGCTC	2 cut(s)	539, 659
Eco130I	CCWWGG	2 cut(s)	662, 695
Eco24I	GRGCYC	2 cut(s)	541, 661
Eco47I	GGWCC	2 cut(s)	630, 692
Eco53kI	GAGCTC	2 cut(s)	539, 659
Eco91I	GGTNACC	1 cut(s)	215
EcoICRI	GAGCTC	2 cut(s)	539, 659
EcoO109I	RGGNCCY	1 cut(s)	630
EcoO65I	GGTNACC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	165, 445
EcoT14I	CCWWGG	2 cut(s)	662, 695
EcoT38I	GRGCYC	2 cut(s)	541, 661
ErhI	CCWWGG	2 cut(s)	662, 695
FaeI	CATG	4 cut(s)	618, 666, 699, 717
FaqI	GGGAC	2 cut(s)	616, 621
FatI	CATG	4 cut(s)	614, 662, 695, 713
FauI	CCCGC	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	1 cut(s)	51
FriOI	GRGCYC	2 cut(s)	541, 661
Fsp4HI	GCNGC	1 cut(s)	365
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	2 cut(s)	290, 323
GluI	GCNGC	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	1 cut(s)	153
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	2 cut(s)	291, 324
Hin1II	CATG	4 cut(s)	618, 666, 699, 717
Hin6I	GCGC	2 cut(s)	289, 322
HinP1I	GCGC	2 cut(s)	289, 322
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	4 cut(s)	70, 404, 454, 494
HphI	GGTGA	4 cut(s)	209, 377, 581, 611
Hpy166II	GTNNAC	2 cut(s)	25, 124
Hpy188I	TCNGA	2 cut(s)	55, 69
Hpy188III	TCNNGA	2 cut(s)	110, 498
Hpy8I	GTNNAC	2 cut(s)	25, 124
HpyAV	CCTTC	6 cut(s)	142, 347, 484, 598, 641, 732
HpyCH4III	ACNGT	2 cut(s)	272, 781
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	201, 364, 371, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 249, 442
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	618, 666, 699, 717
HspAI	GCGC	2 cut(s)	289, 322
Kzo9I	GATC	4 cut(s)	190, 582, 586, 760
LmnI	GCTCC	5 cut(s)	146, 186, 544, 656, 664
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	351, 432
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	215, 307, 617
MalI	GATC	4 cut(s)	192, 584, 588, 762
MboI	GATC	4 cut(s)	190, 582, 586, 760
MboII	GAAGA	6 cut(s)	199, 239, 474, 620, 685, 754
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	2 cut(s)	541, 661
MseI	TTAA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	167, 447
MvaI	CCWGG	2 cut(s)	167, 447
MvnI	CGCG	3 cut(s)	41, 322, 324
MwoI	GCNNNNNNNGC	3 cut(s)	90, 249, 442
NcoI	CCATGG	2 cut(s)	662, 695
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	4 cut(s)	190, 582, 586, 760
NlaIII	CATG	4 cut(s)	618, 666, 699, 717
NlaIV	GGNNCC	2 cut(s)	94, 632
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	215, 617
NspI	RCATGY	2 cut(s)	618, 717
PasI	CCCWGGG	1 cut(s)	166
PciI	ACATGT	2 cut(s)	614, 713
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	70, 404, 454, 494
PkrI	GCNGC	1 cut(s)	366
PpuMI	RGGWCCY	1 cut(s)	630
PscI	ACATGT	2 cut(s)	614, 713
Psp124BI	GAGCTC	2 cut(s)	541, 661
Psp5II	RGGWCCY	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	165, 445
PspEI	GGTNACC	1 cut(s)	215
PspGI	CCWGG	2 cut(s)	165, 445
PspN4I	GGNNCC	2 cut(s)	94, 632
PspPI	GGNCC	2 cut(s)	630, 692
PspPPI	RGGWCCY	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	760
RsaI	GTAC	2 cut(s)	269, 681
RsaNI	GTAC	2 cut(s)	268, 680
SacI	GAGCTC	2 cut(s)	541, 661
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	4 cut(s)	190, 582, 586, 760
Sau96I	GGNCC	2 cut(s)	630, 692
ScrFI	CCNGG	2 cut(s)	167, 447
SduI	GDGCHC	2 cut(s)	541, 661
SfaNI	GCATC	2 cut(s)	351, 432
SinI	GGWCC	2 cut(s)	630, 692
SsiI	CCGC	5 cut(s)	12, 41, 77, 147, 324
SspMI	CTAG	1 cut(s)	644
SstI	GAGCTC	2 cut(s)	541, 661
StyD4I	CCNGG	2 cut(s)	165, 445
StyI	CCWWGG	2 cut(s)	662, 695
TaaI	ACNGT	2 cut(s)	272, 781
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	535, 585
TfiI	GAWTC	4 cut(s)	70, 404, 454, 494
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseFI	GTSAC	2 cut(s)	215, 617
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	2 cut(s)	215, 617
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	1 cut(s)	42
VpaK11BI	GGWCC	2 cut(s)	630, 692
XceI	RCATGY	2 cut(s)	618, 717
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.