Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023962.1

Orthogroup ID

OG0009123

Physical Location & Seq

Genomic Coordinates Reverse (-)

10053 .. 10540

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023962.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgaggaagacagaggcagtgttctacgcggatacctaccatccgatccaagccggcagcatcgacggcaccgatactctccctcacgacagcgccgtctatcgagcctggctttgctcctccgccgccctctatgacccgtccggcgatcccaagctcatcggcgacccctactgcactctcttcgtcgcccgcctctctcccctcaccaccgaaaacactcttcgccaggctatgagcaagtatggtcgcgttaagaacttgcgtttggtcaggcatatcggtaagctttgctttcagattattgcagttaatttagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034693 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

107

Amino Acids

11.92

Weight (kDa)

8.86

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43370 AT2G43370
fragaria_vesca	FvH4_4g12800 FvH4_4g12800 FvH4_4g12800
malus_domestica	MD03G1203000.v1.1 MD04G1022600.v1.1
prunus_persica	Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1
pyrus_communis	pycom04g01950
rosa_chinensis	RchiOBHm_Chr4g0412221 RchiOBHm_Chr4g0412301
rosa_laevigata	RLG00000008309
rosa_multiflora	Rmu_sc0023962.1_g000002 Rmu_sc0035009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356440
rosa_rugosa	Rorug04G0105200 Rorug04G0105200 Rorug04G0105300
rosa_samantha	Rh4CG182800
rosa_wichuraiana	Rw4G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	68
AccII	CGCG	2 cut(s)	29, 252
AciI	CCGC	4 cut(s)	29, 123, 126, 193
AclWI	GGATC	2 cut(s)	40, 143
AjnI	CCWGG	2 cut(s)	107, 228
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	2 cut(s)	157, 289
AluI	AGCT	2 cut(s)	157, 289
AlwI	GGATC	2 cut(s)	40, 143
ApeKI	GCWGC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	2 cut(s)	80, 82
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	2 cut(s)	109, 230
BciVI	GTATCC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	25
BisI	GCNGC	2 cut(s)	58, 126
BlsI	GCNGC	2 cut(s)	59, 127
Bme1390I	CCNGG	2 cut(s)	109, 230
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	2 cut(s)	109, 230
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	109, 230
BseGI	GGATG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	160
Bsh1236I	CGCG	2 cut(s)	29, 252
BshNI	GGYRCC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	54, 144
Bsp143I	GATC	2 cut(s)	45, 148
BspACI	CCGC	4 cut(s)	29, 123, 126, 193
BspFNI	CGCG	2 cut(s)	29, 252
BspLI	GGNNCC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	40, 143
BspT107I	GGYRCC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	2 cut(s)	45, 148
Bst2UI	CCWGG	2 cut(s)	109, 230
Bst6I	CTCTTC	2 cut(s)	188, 228
BstC8I	GCNNGC	2 cut(s)	55, 193
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	2 cut(s)	29, 252
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	48, 151
BstMBI	GATC	2 cut(s)	45, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	2 cut(s)	109, 230
BstSCI	CCNGG	2 cut(s)	107, 228
BstUI	CGCG	2 cut(s)	29, 252
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	55, 193
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	53
CviJI	RGCY	6 cut(s)	53, 107, 112, 157, 233, 289
CviKI_1	RGCY	6 cut(s)	53, 107, 112, 157, 233, 289
DpnI	GATC	2 cut(s)	47, 150
DpnII	GATC	2 cut(s)	45, 148
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	188, 228
EarI	CTCTTC	2 cut(s)	188, 228
EciI	GGCGGA	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	107, 228
FaiI	YATR	5 cut(s)	135, 236, 246, 279, 322
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	58, 126
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	58, 126
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	2 cut(s)	58, 126
HaeII	RGCGCY	1 cut(s)	96
HapII	CCGG	2 cut(s)	54, 144
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	287
HpaII	CCGG	2 cut(s)	54, 144
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	45, 300
Hpy188III	TCNNGA	1 cut(s)	86
Hpy99I	CGWCG	2 cut(s)	68, 191
HpyCH4V	TGCA	2 cut(s)	177, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HspAI	GCGC	1 cut(s)	93
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	45, 148
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	7 cut(s)	67, 94, 121, 157, 215, 242, 259
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	69
MalI	GATC	2 cut(s)	47, 150
MboI	GATC	2 cut(s)	45, 148
MboII	GAAGA	3 cut(s)	19, 175, 215
MluCI	AATT	1 cut(s)	313
MnlI	CCTC	6 cut(s)	7, 93, 130, 140, 206, 215
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	2 cut(s)	255, 312
MspI	CCGG	2 cut(s)	54, 144
MspR9I	CCNGG	2 cut(s)	109, 230
MvaI	CCWGG	2 cut(s)	109, 230
MvnI	CGCG	2 cut(s)	29, 252
MwoI	GCNNNNNNNGC	1 cut(s)	66
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	45, 148
NgoMIV	GCCGGC	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 93
PdiI	GCCGGC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	59, 127
Psp6I	CCWGG	2 cut(s)	107, 228
PspGI	CCWGG	2 cut(s)	107, 228
PspN4I	GGNNCC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	255, 312
SatI	GCNGC	2 cut(s)	58, 126
Sau3AI	GATC	2 cut(s)	45, 148
ScrFI	CCNGG	2 cut(s)	109, 230
SetI	ASST	3 cut(s)	38, 159, 291
SfaNI	GCATC	1 cut(s)	69
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	4 cut(s)	29, 123, 126, 193
StyD4I	CCNGG	2 cut(s)	107, 228
TaqI	TCGA	2 cut(s)	63, 103
TasI	AATT	1 cut(s)	313
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	255, 312
Tru9I	TTAA	2 cut(s)	255, 312
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	1 cut(s)	57
TspRI	CASTG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.