Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009123

Physical Location & Seq

Genomic Coordinates Forward (+)

33302727 .. 33306150

Gene Structure 3424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGGAAGACAGAGGCAGTGTTCTACGCGGATACGTACCATCCGATCCAAGCCGGAAGCATCGACGGCACCGATACTCTCCCTCACGACAGCGCCGTCTATCGAGCCTGGCTTTGCTCCACCGCCGCCCTCTATGACCCGTCCGGCGATCCCAAGCTCATCGGCGACCCCTACCGCACTCTATTCGTCGCCCGCCTCTCTCCCCTCACCACCGAAAACACTCTTCGCCAGGCTATGAGCAAGTATGGTCGGGTTAAGAACTTGCGTTTGGTCAGGCATATCGTAACCGGTGCCTCACGTGGCTATGCTTTCGTTGAGTATGAAACCGAAAGGGAGATGCGGCGTGGATACAAGGAAGCTCACCATTCCCTTGTTGATGATTATGAAATTATCGTGGATTACAACAGACAGCAGTTGATGCCAGGATGGATTCCAAGACGATTAGGAGGGGGTTTTGGTGGTAAGAAGGAATCTGGACAACTTCGATTTGGAGGACGAGAAAGACCATTTCGAGCTCCCATTCGTATCCCATATGATGATCTGGAAAAACTTGGAATCCCACCTCCACCAGAAGGGCGATACATGTCCCGGTATCAGGACCCATCCCCACCTAGAAGAAAAAGAAGCTCAGTAGATGGGGAAGAAGGTACTCACAGAAGGTCAATGGATAGGGAAGCAAACATACGCAAAAGCAATCCTGCAGATAACGATGACAGGTTTCATAAAAGATCTATGGATGAGGACTACCATTCACCCAGAAGGAGCTCTAATGAGTCAGCTCAACGCCATCACAGTAGGAGCTCTAGAGATAGAGAAGGAGGTAATCACAGAAGGTCTACTGATAGGGAAGCAAGCATGCCCAAAAGCAGTCCTCTCGACAAGGAAGAGTCATTTCGTAAAAGATCTATGGACCAGGAAGACCGTACATTCAAAAGGAGCTCTATTGAGACCGAAGAATTCCATCGCAGTAGGAGATCTGTGGACACGGAGCAGCGTTCACACAAAAGGAGCTCTAGAGATAGGGATGAGCGTTCTCACAAGCGGCACAAGTCCCGTCACTATGAGAGGTCCACTAGTTATGATCGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034693 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

363

Amino Acids

42.5

Weight (kDa)

9.86

Isoelectric Point (pI)

85.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	61 - 130	1.6e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43370 AT2G43370
fragaria_vesca	FvH4_4g12800 FvH4_4g12800 FvH4_4g12800
malus_domestica	MD03G1203000.v1.1 MD04G1022600.v1.1
prunus_persica	Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1
pyrus_communis	pycom04g01950
rosa_chinensis	RchiOBHm_Chr4g0412221 RchiOBHm_Chr4g0412301
rosa_laevigata	RLG00000008309
rosa_multiflora	Rmu_sc0023962.1_g000002 Rmu_sc0035009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356440
rosa_rugosa	Rorug04G0105200 Rorug04G0105200 Rorug04G0105300
rosa_samantha	Rh4CG182800
rosa_wichuraiana	Rw4G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB1I	GGYRCC	2 cut(s)	68, 290
AccI	GTMKAC	1 cut(s)	836
AccII	CGCG	1 cut(s)	29
AciI	CCGC	7 cut(s)	29, 123, 126, 175, 193, 340, 1042
AclWI	GGATC	2 cut(s)	40, 143
AcsI	RAATTY	1 cut(s)	956
AcvI	CACGTG	1 cut(s)	299
AfaI	GTAC	3 cut(s)	38, 649, 925
AfiI	CCNNNNNNNGG	2 cut(s)	572, 595
AflIII	ACRYGT	1 cut(s)	582
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	931
AhlI	ACTAGT	1 cut(s)	1073
AjnI	CCWGG	4 cut(s)	107, 228, 421, 912
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	9 cut(s)	157, 359, 515, 627, 765, 779, 801, 939, 1011
AluI	AGCT	9 cut(s)	157, 359, 515, 627, 765, 779, 801, 939, 1011
Alw21I	GWGCWC	5 cut(s)	517, 767, 803, 941, 1013
Alw26I	GTCTC	1 cut(s)	941
AlwI	GGATC	2 cut(s)	40, 143
ApeKI	GCWGC	1 cut(s)	991
ApoI	RAATTY	1 cut(s)	956
AsiGI	ACCGGT	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	598, 910, 1068
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	3 cut(s)	199, 353, 744
AvaII	GGWCC	3 cut(s)	598, 910, 1068
BanI	GGYRCC	2 cut(s)	68, 290
BanII	GRGCYC	5 cut(s)	517, 767, 803, 941, 1013
BarI	GAAGNNNNNNTAC	2 cut(s)	666, 698
BbrPI	CACGTG	1 cut(s)	299
BbsI	GAAGAC	2 cut(s)	14, 924
Bbv12I	GWGCWC	5 cut(s)	517, 767, 803, 941, 1013
BbvI	GCAGC	1 cut(s)	1003
BccI	CCATC	6 cut(s)	48, 420, 610, 629, 795, 969
BceAI	ACGGC	2 cut(s)	80, 82
BcgI	CGANNNNNNTGC	4 cut(s)	166, 200, 856, 890
BciT130I	CCWGG	4 cut(s)	109, 230, 423, 914
BciVI	GTATCC	3 cut(s)	25, 341, 536
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	941
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	4 cut(s)	612, 804, 1014, 1074
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	96
BfuI	GTATCC	3 cut(s)	25, 341, 536
BglII	AGATCT	3 cut(s)	728, 902, 974
BisI	GCNGC	4 cut(s)	126, 341, 992, 1043
BlsI	GCNGC	4 cut(s)	127, 342, 993, 1044
Bme1390I	CCNGG	5 cut(s)	109, 230, 423, 589, 914
Bme18I	GGWCC	3 cut(s)	598, 910, 1068
BmgT120I	GGNCC	3 cut(s)	598, 910, 1068
BmiI	GGNNCC	3 cut(s)	70, 292, 600
BmrFI	CCNGG	5 cut(s)	109, 230, 423, 589, 914
BmsI	GCATC	3 cut(s)	69, 327, 408
BpiI	GAAGAC	2 cut(s)	14, 924
BpuMI	CCSGG	1 cut(s)	589
BsaAI	YACGTR	2 cut(s)	36, 299
BsaI	GGTCTC	1 cut(s)	941
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 595
Bse118I	RCCGGY	1 cut(s)	287
BseBI	CCWGG	4 cut(s)	109, 230, 423, 914
BseGI	GGATG	5 cut(s)	40, 431, 602, 742, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	572, 595
BseMII	CTCAG	1 cut(s)	642
BseXI	GCAGC	1 cut(s)	1003
Bsh1236I	CGCG	1 cut(s)	29
BshNI	GGYRCC	2 cut(s)	68, 290
BshTI	ACCGGT	1 cut(s)	287
BsiHKAI	GWGCWC	5 cut(s)	517, 767, 803, 941, 1013
BsiSI	CCGG	4 cut(s)	54, 144, 288, 589
BslFI	GGGAC	2 cut(s)	571, 1036
BslI	CCNNNNNNNGG	2 cut(s)	572, 595
BsmAI	GTCTC	1 cut(s)	941
BsmFI	GGGAC	2 cut(s)	571, 1036
Bso31I	GGTCTC	1 cut(s)	941
Bsp1286I	GDGCHC	5 cut(s)	517, 767, 803, 941, 1013
Bsp143I	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
BspACI	CCGC	7 cut(s)	29, 123, 126, 175, 193, 340, 1042
BspCNI	CTCAG	1 cut(s)	641
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	3 cut(s)	70, 292, 600
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	2 cut(s)	40, 143
BspT107I	GGYRCC	2 cut(s)	68, 290
BspTNI	GGTCTC	1 cut(s)	941
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
Bst2UI	CCWGG	4 cut(s)	109, 230, 423, 914
Bst4CI	ACNGT	2 cut(s)	794, 923
Bst6I	CTCTTC	2 cut(s)	228, 879
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstBAI	YACGTR	2 cut(s)	36, 299
BstC8I	GCNNGC	3 cut(s)	193, 853, 857
BstDEI	CTNAG	1 cut(s)	628
BstF5I	GGATG	5 cut(s)	40, 431, 602, 742, 1030
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	7 cut(s)	48, 151, 541, 731, 905, 977, 1084
BstMAI	GTCTC	1 cut(s)	941
BstMBI	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 418
BstNI	CCWGG	4 cut(s)	109, 230, 423, 914
BstNSI	RCATGY	2 cut(s)	586, 859
BstSCI	CCNGG	5 cut(s)	107, 228, 421, 587, 912
BstSFI	CTRYAG	1 cut(s)	699
BstSNI	TACGTA	1 cut(s)	36
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	1003
BstV2I	GAAGAC	2 cut(s)	14, 924
BstX2I	RGATCY	3 cut(s)	728, 902, 974
BstYI	RGATCY	3 cut(s)	728, 902, 974
BsuI	GTATCC	3 cut(s)	25, 341, 536
BtgZI	GCGATG	1 cut(s)	947
BtsCI	GGATG	5 cut(s)	40, 431, 602, 742, 1030
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	193, 853, 857
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	598, 910, 1068
Csp6I	GTAC	3 cut(s)	37, 648, 924
CspAI	ACCGGT	1 cut(s)	287
CviAII	CATG	2 cut(s)	583, 856
CviQI	GTAC	3 cut(s)	37, 648, 924
DdeI	CTNAG	1 cut(s)	628
DpnI	GATC	7 cut(s)	47, 150, 540, 730, 904, 976, 1083
DpnII	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	228, 879
EarI	CTCTTC	2 cut(s)	228, 879
Ecl136II	GAGCTC	5 cut(s)	515, 765, 801, 939, 1011
Eco105I	TACGTA	1 cut(s)	36
Eco24I	GRGCYC	5 cut(s)	517, 767, 803, 941, 1013
Eco31I	GGTCTC	1 cut(s)	941
Eco47I	GGWCC	3 cut(s)	598, 910, 1068
Eco53kI	GAGCTC	5 cut(s)	515, 765, 801, 939, 1011
Eco72I	CACGTG	1 cut(s)	299
EcoICRI	GAGCTC	5 cut(s)	515, 765, 801, 939, 1011
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	956
EcoRII	CCWGG	4 cut(s)	107, 228, 421, 912
EcoT38I	GRGCYC	5 cut(s)	517, 767, 803, 941, 1013
FaeI	CATG	2 cut(s)	586, 859
FaqI	GGGAC	2 cut(s)	571, 1036
FatI	CATG	2 cut(s)	582, 855
FauI	CCCGC	1 cut(s)	200
FauNDI	CATATG	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	836
Fnu4HI	GCNGC	4 cut(s)	126, 341, 992, 1043
FokI	GGATG	5 cut(s)	27, 438, 589, 749, 1037
FriOI	GRGCYC	5 cut(s)	517, 767, 803, 941, 1013
Fsp4HI	GCNGC	4 cut(s)	126, 341, 992, 1043
FspBI	CTAG	4 cut(s)	612, 804, 1014, 1074
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	4 cut(s)	126, 341, 992, 1043
HaeII	RGCGCY	1 cut(s)	96
HapII	CCGG	4 cut(s)	54, 144, 288, 589
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	586, 859
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	5 cut(s)	430, 470, 555, 773, 887
HpaII	CCGG	4 cut(s)	54, 144, 288, 589
HphI	GGTGA	3 cut(s)	199, 353, 744
Hpy166II	GTNNAC	4 cut(s)	837, 982, 998, 1071
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	7 cut(s)	86, 474, 542, 596, 804, 875, 1014
Hpy8I	GTNNAC	4 cut(s)	837, 982, 998, 1071
Hpy99I	CGWCG	2 cut(s)	68, 191
HpyAV	CCTTC	7 cut(s)	460, 566, 638, 651, 753, 809, 825
HpyCH4III	ACNGT	2 cut(s)	794, 923
HpyCH4IV	ACGT	2 cut(s)	35, 298
HpyCH4V	TGCA	1 cut(s)	701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 418
HpyF3I	CTNAG	1 cut(s)	628
HpySE526I	ACGT	2 cut(s)	35, 298
Hsp92II	CATG	2 cut(s)	586, 859
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
LmnI	GCTCC	7 cut(s)	122, 520, 762, 798, 936, 988, 1008
Lsp1109I	GCAGC	1 cut(s)	1003
LweI	GCATC	3 cut(s)	69, 327, 408
MaeI	CTAG	4 cut(s)	612, 804, 1014, 1074
MaeII	ACGT	2 cut(s)	35, 298
MaeIII	GTNAC	2 cut(s)	283, 1055
MalI	GATC	7 cut(s)	47, 150, 540, 730, 904, 976, 1083
MboI	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
MboII	GAAGA	7 cut(s)	19, 215, 627, 653, 896, 929, 965
MflI	RGATCY	3 cut(s)	728, 902, 974
MhlI	GDGCHC	5 cut(s)	517, 767, 803, 941, 1013
MluCI	AATT	2 cut(s)	387, 956
MlyI	GAGTC	2 cut(s)	782, 896
MseI	TTAA	2 cut(s)	255, 1090
MspI	CCGG	4 cut(s)	54, 144, 288, 589
MspR9I	CCNGG	5 cut(s)	109, 230, 423, 589, 914
MvaI	CCWGG	4 cut(s)	109, 230, 423, 914
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	66, 418
NciI	CCSGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
NlaIII	CATG	2 cut(s)	586, 859
NlaIV	GGNNCC	3 cut(s)	70, 292, 600
NmuCI	GTSAC	1 cut(s)	1055
NspI	RCATGY	2 cut(s)	586, 859
PaeI	GCATGC	1 cut(s)	859
PciI	ACATGT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	3 cut(s)	41, 69, 93
PfeI	GAWTC	3 cut(s)	430, 470, 555
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	127, 342, 993, 1044
PleI	GAGTC	2 cut(s)	781, 895
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
PpsI	GAGTC	2 cut(s)	781, 895
Ppu21I	YACGTR	2 cut(s)	36, 299
PpuMI	RGGWCCY	1 cut(s)	598
PscI	ACATGT	1 cut(s)	582
Psp124BI	GAGCTC	5 cut(s)	517, 767, 803, 941, 1013
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	4 cut(s)	107, 228, 421, 912
PspCI	CACGTG	1 cut(s)	299
PspGI	CCWGG	4 cut(s)	107, 228, 421, 912
PspN4I	GGNNCC	3 cut(s)	70, 292, 600
PspPI	GGNCC	3 cut(s)	598, 910, 1068
PspPPI	RGGWCCY	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	703
PsuI	RGATCY	3 cut(s)	728, 902, 974
RsaI	GTAC	3 cut(s)	38, 649, 925
RsaNI	GTAC	3 cut(s)	37, 648, 924
SacI	GAGCTC	5 cut(s)	517, 767, 803, 941, 1013
SaqAI	TTAA	2 cut(s)	255, 1090
SatI	GCNGC	4 cut(s)	126, 341, 992, 1043
Sau3AI	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
Sau96I	GGNCC	3 cut(s)	598, 910, 1068
SchI	GAGTC	2 cut(s)	782, 896
ScrFI	CCNGG	5 cut(s)	109, 230, 423, 589, 914
SduI	GDGCHC	5 cut(s)	517, 767, 803, 941, 1013
SfaNI	GCATC	3 cut(s)	69, 327, 408
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	3 cut(s)	598, 910, 1068
SnaBI	TACGTA	1 cut(s)	36
SpeI	ACTAGT	1 cut(s)	1073
SphI	GCATGC	1 cut(s)	859
Sse9I	AATT	2 cut(s)	387, 956
SsiI	CCGC	7 cut(s)	29, 123, 126, 175, 193, 340, 1042
SspMI	CTAG	4 cut(s)	612, 804, 1014, 1074
SstI	GAGCTC	5 cut(s)	517, 767, 803, 941, 1013
StyD4I	CCNGG	5 cut(s)	107, 228, 421, 587, 912
TaaI	ACNGT	2 cut(s)	794, 923
TaiI	ACGT	2 cut(s)	38, 301
TaqI	TCGA	5 cut(s)	63, 103, 484, 511, 876
TaqII	GACCGA	1 cut(s)	965
TasI	AATT	2 cut(s)	387, 956
TauI	GCSGC	3 cut(s)	128, 343, 1045
TfiI	GAWTC	3 cut(s)	430, 470, 555
Tru1I	TTAA	2 cut(s)	255, 1090
Tru9I	TTAA	2 cut(s)	255, 1090
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	1055
TseI	GCWGC	1 cut(s)	991
Tsp45I	GTSAC	1 cut(s)	1055
TspDTI	ATGAA	3 cut(s)	336, 399, 710
TspGWI	ACGGA	1 cut(s)	1001
TspRI	CASTG	1 cut(s)	24
VpaK11BI	GGWCC	3 cut(s)	598, 910, 1068
XapI	RAATTY	1 cut(s)	956
XbaI	TCTAGA	2 cut(s)	803, 1013
XceI	RCATGY	2 cut(s)	586, 859
XmiI	GTMKAC	1 cut(s)	836
XspI	CTAG	4 cut(s)	612, 804, 1014, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.