Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009123

Physical Location & Seq

Genomic Coordinates Reverse (-)

14436448 .. 14440793

Gene Structure 4346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G172700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCAAATGAGTGGGCGGAACGTAAATGTAAACTCAGTGTTCTACGCGGAGGCGTATCATCCGGTTCAAGCGGGAAGCATAGACGGCACCGACATTCTCCCTCACGACAACGCTGTCTACAGAGCCTTCCTTTGCTCCTCCGCTGGCCTCTATGACCCCTTGGGCGATCCCAAGCTTATCGGCGACCCTTATTGCACCCTCTTCGTCGGCCACCTCTCTCACCTCACCACCGAACAATCTCTTCGCAAGGCTTTGAGCAAGTATGGTCGAGTGAAGGACTTGCGCTTGGTCAGGCACATTGTAACTGGTGCCTCACGCGGCTATGCATTTGTTGAATATGAAACCGAAAGGGAGATGCAGCGTGCATATAAGGAAGCTCACCATTCCTTTATTGATGATTCTGAAGTTATAGTTGATTACAACAGACAGCAGTTGATGCCAGGGTGGATTCCAAGAAGATTAGGAGGGGGTCTTGGTGGTAAGAAGGAATCTGGACAACTTCGTTTCGGAGGACGTGAAAGACCATTTCGAGCTCCCCTGCGTTCAATCCCGTATGATGATTTAGAGAGACTTGGGATCCCACCTCCTCCAGAAGGAAGATACATGTCACGCTATCAGGTCCCATCCCCACCCAGAAGGAAAAGGAACTCTGTGGATAGGGAGGAAGGTATTCATAAAAGGTCCATGGAGAGGGGAGCGAACACGCGCAAAAGCAGTCCTGTGGAGAAGGAAGAAAGGTCTCACAAAAGATCTATGGACCCAGAGGACCATTCATTCAAAAGGAGCTCTGTTGAGACAGAACACCATCGCAACAGGAGCTCCATTGACAGAGCAGAGCGCTCTCACAAGAGGACCTCGAGGGATAGGGATGATCGTTCTCACAAGCGGCACAAGTCCCATCGCCATGAGAGATCCACTAGCCATGATCACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034693 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

312

Amino Acids

35.99

Weight (kDa)

9.77

Isoelectric Point (pI)

73.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43370 AT2G43370
fragaria_vesca	FvH4_4g12800 FvH4_4g12800 FvH4_4g12800
malus_domestica	MD03G1203000.v1.1 MD04G1022600.v1.1
prunus_persica	Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1
pyrus_communis	pycom04g01950
rosa_chinensis	RchiOBHm_Chr4g0412221 RchiOBHm_Chr4g0412301
rosa_laevigata	RLG00000008309
rosa_multiflora	Rmu_sc0023962.1_g000002 Rmu_sc0035009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356440
rosa_rugosa	Rorug04G0105200 Rorug04G0105200 Rorug04G0105300
rosa_samantha	Rh4CG182800
rosa_wichuraiana	Rw4G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AbsI	CCTCGAGG	1 cut(s)	856
AccB1I	GGYRCC	2 cut(s)	86, 308
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	3 cut(s)	47, 318, 706
AciI	CCGC	6 cut(s)	16, 47, 71, 141, 318, 886
AclWI	GGATC	4 cut(s)	161, 571, 584, 906
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	423
AfeI	AGCGCT	1 cut(s)	839
AfiI	CCNNNNNNNGG	2 cut(s)	593, 690
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	4 cut(s)	68, 335, 546, 778
AjiI	CACGTC	1 cut(s)	515
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	5 cut(s)	175, 377, 533, 786, 819
AluI	AGCT	5 cut(s)	175, 377, 533, 786, 819
Alw21I	GWGCWC	3 cut(s)	535, 788, 821
Alw26I	GTCTC	3 cut(s)	562, 744, 788
AlwI	GGATC	4 cut(s)	161, 571, 584, 906
Ama87I	CYCGRG	1 cut(s)	856
Aor51HI	AGCGCT	1 cut(s)	839
AoxI	GGCC	2 cut(s)	145, 208
ApeKI	GCWGC	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	3 cut(s)	285, 708, 840
AspS9I	GGNCC	5 cut(s)	619, 681, 757, 766, 852
AsuHPI	GGTGA	3 cut(s)	212, 217, 371
AvaI	CYCGRG	1 cut(s)	856
AvaII	GGWCC	5 cut(s)	619, 681, 757, 766, 852
BamHI	GGATCC	1 cut(s)	576
BanI	GGYRCC	2 cut(s)	86, 308
BanII	GRGCYC	3 cut(s)	535, 788, 821
Bbv12I	GWGCWC	3 cut(s)	535, 788, 821
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	631, 813, 906
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	925
BcoDI	GTCTC	3 cut(s)	562, 744, 788
BfaI	CTAG	1 cut(s)	918
BfmI	CTRYAG	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	841
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	3 cut(s)	319, 359, 887
BlsI	GCNGC	3 cut(s)	320, 360, 888
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	5 cut(s)	619, 681, 757, 766, 852
BmeT110I	CYCGRG	1 cut(s)	856
BmgBI	CACGTC	1 cut(s)	515
BmgT120I	GGNCC	5 cut(s)	619, 681, 757, 766, 852
BmiI	GGNNCC	5 cut(s)	88, 310, 578, 621, 759
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	345, 426
BpmI	CTGGAG	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	3 cut(s)	159, 440, 684
BsaWI	WCCGGW	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 690
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	159, 440, 684
BseGI	GGATG	3 cut(s)	58, 623, 874
BseLI	CCNNNNNNNGG	2 cut(s)	593, 690
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	127, 576
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	3 cut(s)	47, 318, 706
BshFI	GGCC	2 cut(s)	147, 210
BshNI	GGYRCC	2 cut(s)	86, 308
BsiHKAI	GWGCWC	3 cut(s)	535, 788, 821
BsiHKCI	CYCGRG	1 cut(s)	856
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	605, 880
BslI	CCNNNNNNNGG	2 cut(s)	593, 690
BsmAI	GTCTC	3 cut(s)	562, 744, 788
BsmFI	GGGAC	2 cut(s)	605, 880
BsnI	GGCC	2 cut(s)	147, 210
Bso31I	GGTCTC	1 cut(s)	744
BsoBI	CYCGRG	1 cut(s)	856
Bsp1286I	GDGCHC	3 cut(s)	535, 788, 821
Bsp143I	GATC	6 cut(s)	166, 576, 749, 871, 911, 925
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	6 cut(s)	16, 47, 71, 141, 318, 886
BspANI	GGCC	2 cut(s)	147, 210
BspCNI	CTCAG	1 cut(s)	47
BspFNI	CGCG	3 cut(s)	47, 318, 706
BspLI	GGNNCC	5 cut(s)	88, 310, 578, 621, 759
BspPI	GGATC	4 cut(s)	161, 571, 584, 906
BspT107I	GGYRCC	2 cut(s)	86, 308
BspTNI	GGTCTC	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	159, 440, 684
BssMI	GATC	6 cut(s)	166, 576, 749, 871, 911, 925
BssT1I	CCWWGG	2 cut(s)	159, 684
Bst2UI	CCWGG	1 cut(s)	441
Bst6I	CTCTTC	2 cut(s)	206, 246
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	145, 363
BstDEI	CTNAG	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	684
BstENI	CCTNNNNNAGG	1 cut(s)	591
BstF5I	GGATG	3 cut(s)	58, 623, 874
BstFNI	CGCG	3 cut(s)	47, 318, 706
BstH2I	RGCGCY	1 cut(s)	841
BstHHI	GCGC	3 cut(s)	285, 708, 840
BstKTI	GATC	6 cut(s)	169, 579, 752, 874, 914, 928
BstMAI	GTCTC	3 cut(s)	562, 744, 788
BstMBI	GATC	6 cut(s)	166, 576, 749, 871, 911, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 436, 816
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	118
BstUI	CGCG	3 cut(s)	47, 318, 706
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	3 cut(s)	576, 749, 911
BstYI	RGATCY	3 cut(s)	576, 749, 911
BsuRI	GGCC	2 cut(s)	147, 210
BtgI	CCRYGG	1 cut(s)	684
BtgZI	GCGATG	2 cut(s)	791, 884
BtrI	CACGTC	1 cut(s)	515
BtsCI	GGATG	3 cut(s)	58, 623, 874
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	145, 363
CfoI	GCGC	3 cut(s)	285, 708, 840
Cfr13I	GGNCC	5 cut(s)	619, 681, 757, 766, 852
CviAII	CATG	4 cut(s)	604, 685, 905, 923
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	6 cut(s)	168, 578, 751, 873, 913, 927
DpnII	GATC	6 cut(s)	166, 576, 749, 871, 911, 925
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	206, 246
EarI	CTCTTC	2 cut(s)	206, 246
EciI	GGCGGA	1 cut(s)	31
Ecl136II	GAGCTC	3 cut(s)	533, 786, 819
Eco130I	CCWWGG	2 cut(s)	159, 684
Eco24I	GRGCYC	3 cut(s)	535, 788, 821
Eco31I	GGTCTC	1 cut(s)	744
Eco47I	GGWCC	5 cut(s)	619, 681, 757, 766, 852
Eco47III	AGCGCT	1 cut(s)	839
Eco53kI	GAGCTC	3 cut(s)	533, 786, 819
Eco57I	CTGAAG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	856
EcoICRI	GAGCTC	3 cut(s)	533, 786, 819
EcoNI	CCTNNNNNAGG	1 cut(s)	591
EcoO109I	RGGNCCY	2 cut(s)	619, 852
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	159, 684
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	3 cut(s)	535, 788, 821
ErhI	CCWWGG	2 cut(s)	159, 684
FaeI	CATG	4 cut(s)	607, 688, 908, 926
FaqI	GGGAC	2 cut(s)	605, 880
FatI	CATG	4 cut(s)	603, 684, 904, 922
FauI	CCCGC	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	925
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	319, 359, 887
FokI	GGATG	3 cut(s)	45, 610, 881
FriOI	GRGCYC	3 cut(s)	535, 788, 821
Fsp4HI	GCNGC	3 cut(s)	319, 359, 887
FspBI	CTAG	1 cut(s)	918
GlaI	GCGC	3 cut(s)	284, 707, 839
GluI	GCNGC	3 cut(s)	319, 359, 887
GsuI	CTGGAG	1 cut(s)	573
HaeII	RGCGCY	1 cut(s)	841
HaeIII	GGCC	2 cut(s)	147, 210
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	3 cut(s)	285, 708, 840
Hin1II	CATG	4 cut(s)	607, 688, 908, 926
Hin6I	GCGC	3 cut(s)	283, 706, 838
HinP1I	GCGC	3 cut(s)	283, 706, 838
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	3 cut(s)	398, 448, 488
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	3 cut(s)	212, 217, 371
Hpy166II	GTNNAC	2 cut(s)	31, 118
Hpy188I	TCNGA	2 cut(s)	403, 509
Hpy188III	TCNNGA	3 cut(s)	104, 492, 590
Hpy8I	GTNNAC	2 cut(s)	31, 118
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	7 cut(s)	136, 268, 478, 587, 630, 659, 721
HpyCH4IV	ACGT	2 cut(s)	21, 514
HpyCH4V	TGCA	5 cut(s)	4, 195, 326, 358, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 436, 816
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	2 cut(s)	21, 514
Hsp92II	CATG	4 cut(s)	607, 688, 908, 926
HspAI	GCGC	3 cut(s)	283, 706, 838
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	6 cut(s)	166, 576, 749, 871, 911, 925
LmnI	GCTCC	6 cut(s)	140, 538, 695, 783, 816, 824
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	2 cut(s)	345, 426
MaeI	CTAG	1 cut(s)	918
MaeII	ACGT	2 cut(s)	21, 514
MaeIII	GTNAC	2 cut(s)	301, 606
MalI	GATC	6 cut(s)	168, 578, 751, 873, 913, 927
MboI	GATC	6 cut(s)	166, 576, 749, 871, 911, 925
MboII	GAAGA	5 cut(s)	193, 233, 468, 609, 743
MflI	RGATCY	3 cut(s)	576, 749, 911
MhlI	GDGCHC	3 cut(s)	535, 788, 821
Mph1103I	ATGCAT	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	1 cut(s)	934
MslI	CAYNNNNRTG	1 cut(s)	903
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	3 cut(s)	47, 318, 706
MwoI	GCNNNNNNNGC	3 cut(s)	84, 436, 816
NcoI	CCATGG	1 cut(s)	684
NdeII	GATC	6 cut(s)	166, 576, 749, 871, 911, 925
NlaIII	CATG	4 cut(s)	607, 688, 908, 926
NlaIV	GGNNCC	5 cut(s)	88, 310, 578, 621, 759
NmuCI	GTSAC	1 cut(s)	606
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	1 cut(s)	607
PaeR7I	CTCGAG	1 cut(s)	856
PciI	ACATGT	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	398, 448, 488
PkrI	GCNGC	3 cut(s)	320, 360, 888
PpuMI	RGGWCCY	2 cut(s)	619, 852
PscI	ACATGT	1 cut(s)	603
Psp124BI	GAGCTC	3 cut(s)	535, 788, 821
Psp5II	RGGWCCY	2 cut(s)	619, 852
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	5 cut(s)	88, 310, 578, 621, 759
PspPI	GGNCC	5 cut(s)	619, 681, 757, 766, 852
PspPPI	RGGWCCY	2 cut(s)	619, 852
PspXI	VCTCGAGB	1 cut(s)	856
PsuI	RGATCY	3 cut(s)	576, 749, 911
RseI	CAYNNNNRTG	1 cut(s)	903
SacI	GAGCTC	3 cut(s)	535, 788, 821
SaqAI	TTAA	1 cut(s)	934
SatI	GCNGC	3 cut(s)	319, 359, 887
Sau3AI	GATC	6 cut(s)	166, 576, 749, 871, 911, 925
Sau96I	GGNCC	5 cut(s)	619, 681, 757, 766, 852
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	3 cut(s)	535, 788, 821
SfaNI	GCATC	2 cut(s)	345, 426
SfcI	CTRYAG	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	856
SinI	GGWCC	5 cut(s)	619, 681, 757, 766, 852
SlaI	CTCGAG	1 cut(s)	856
SmiMI	CAYNNNNRTG	1 cut(s)	903
SmlI	CTYRAG	1 cut(s)	856
SmoI	CTYRAG	1 cut(s)	856
SsiI	CCGC	6 cut(s)	16, 47, 71, 141, 318, 886
SspMI	CTAG	1 cut(s)	918
SstI	GAGCTC	3 cut(s)	535, 788, 821
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	2 cut(s)	159, 684
TaiI	ACGT	2 cut(s)	24, 517
TaqI	TCGA	3 cut(s)	268, 529, 857
TauI	GCSGC	2 cut(s)	321, 889
TfiI	GAWTC	3 cut(s)	398, 448, 488
Tru1I	TTAA	1 cut(s)	934
Tru9I	TTAA	1 cut(s)	934
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	3 cut(s)	354, 662, 762
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	5 cut(s)	619, 681, 757, 766, 852
XagI	CCTNNNNNAGG	1 cut(s)	591
XceI	RCATGY	1 cut(s)	607
XhoI	CTCGAG	1 cut(s)	856
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	1 cut(s)	918
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.