Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009123

Physical Location & Seq

Genomic Coordinates Forward (+)

27710849 .. 27713476

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1203000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGCGGGGGCGGACGAAACGTGAACGGGAACTTAAACGCGGTGTTTTATGCGGAGGCGTATCATCCGATTCAGGCGGGAAGCATAGACGGTACTGACACACTTCCGCACGACAACGCCGTCTACCGAGCCTTCCTCTGCTCCTCCGCCGGCCTCTATGACCCCCTGGGCGATCCCAAGCTCCTCGGCGACCCTTTTTGCACTCTCTTTGTCGGTCACCTTTCTCATCTCACCACCGAACGCACTCTTCGCAAGGCTATGAGCAAGTATGGTCGGGTCAAAAACTTGCGCTTGGTCAGGCACATTGTAACTGGTGCCTCGCGTGGATATGCTTTTGTTGAATATGAAACCGAAAAGGAGATGCAGCGTGCGTATAAGGAAGCTCACCATTCCCTGATTGATGATTCTAAAGTTATTGTTGATTACAACAGACAGCAGTTGATGCCAGGGTGGATTCCAAGAAGATTAGGAGGTGGTTTCTGTGGTAAGAAGGAATCTGGACAGCTTCGTTTTGGAGGAAGAGAAAAACCATTTCGAGCTCCCCTGCGTCCAATCCCGTATGACGAGCTGGAGAGACTTGGGATCCCACCTCCACTAGAAGGAAGATACATGTCACCCTATCAGGTCCCGTCCCCACCTAGAAGGAAAGGGAGCTCCATGGATAGAGAAGAAAGTACCCATAAAAGGTCCATGGACAGGGAAGCGAACATGTGCAAAAATAGTCCTGTGGAGAACGAAGAAAGGTTTTACAAAAGATCTATTGACCCAGAAGACAGTTCTGTAAGGAGATCAACTGAGACAGAAGAACACTATCACAACAGGAGCTCGGTTGACAGAGCAGAACGCTCTCACAGGAGCTCTAGGGATAGGGACGAGCGCTTTCACAGGAGGATCTCTAGGGATAGGGATGAGCATTGTCACAAAAGGAGCTCGAGGGATAAGGATGAGCGTGCTCACAAGCGGCACAAGTCCCGTCACCGTGAGAGGTCCACCAGCCGTGATCGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034693 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

337

Amino Acids

39.05

Weight (kDa)

9.68

Isoelectric Point (pI)

73.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	69 - 137	3.5e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43370 AT2G43370
fragaria_vesca	FvH4_4g12800 FvH4_4g12800 FvH4_4g12800
malus_domestica	MD03G1203000.v1.1 MD04G1022600.v1.1
prunus_persica	Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1 Prupe.1G172700_v2.0.a1
pyrus_communis	pycom04g01950
rosa_chinensis	RchiOBHm_Chr4g0412221 RchiOBHm_Chr4g0412301
rosa_laevigata	RLG00000008309
rosa_multiflora	Rmu_sc0023962.1_g000002 Rmu_sc0035009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356440
rosa_rugosa	Rorug04G0105200 Rorug04G0105200 Rorug04G0105300
rosa_samantha	Rh4CG182800
rosa_wichuraiana	Rw4G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	2 cut(s)	41, 322
AciI	CCGC	8 cut(s)	6, 12, 41, 53, 77, 107, 147, 961
AclWI	GGATC	4 cut(s)	167, 577, 590, 899
AfaI	GTAC	2 cut(s)	94, 676
AfeI	AGCGCT	1 cut(s)	878
AfiI	CCNNNNNNNGG	3 cut(s)	599, 684, 696
AflIII	ACRYGT	2 cut(s)	609, 708
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	165, 445
AluBI	AGCT	9 cut(s)	181, 383, 505, 539, 568, 654, 825, 858, 930
AluI	AGCT	9 cut(s)	181, 383, 505, 539, 568, 654, 825, 858, 930
Alw21I	GWGCWC	6 cut(s)	541, 656, 827, 860, 932, 955
Alw26I	GTCTC	2 cut(s)	568, 791
AlwI	GGATC	4 cut(s)	167, 577, 590, 899
Ama87I	CYCGRG	1 cut(s)	931
Aor51HI	AGCGCT	1 cut(s)	878
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	364
AspLEI	GCGC	2 cut(s)	291, 879
AspS9I	GGNCC	3 cut(s)	625, 687, 987
AsuHPI	GGTGA	5 cut(s)	209, 223, 377, 606, 968
AvaI	CYCGRG	1 cut(s)	931
AvaII	GGWCC	3 cut(s)	625, 687, 987
BamHI	GGATCC	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	5 cut(s)	541, 656, 827, 860, 932
BbsI	GAAGAC	1 cut(s)	777
Bbv12I	GWGCWC	6 cut(s)	541, 656, 827, 860, 932, 955
BbvI	GCAGC	1 cut(s)	376
BceAI	ACGGC	2 cut(s)	104, 981
BciT130I	CCWGG	2 cut(s)	167, 447
BcoDI	GTCTC	2 cut(s)	568, 791
BfaI	CTAG	4 cut(s)	596, 639, 861, 897
BfoI	RGCGCY	1 cut(s)	880
BglII	AGATCT	1 cut(s)	755
BisI	GCNGC	2 cut(s)	365, 962
BlsI	GCNGC	2 cut(s)	366, 963
Bme1390I	CCNGG	2 cut(s)	167, 447
Bme18I	GGWCC	3 cut(s)	625, 687, 987
BmeT110I	CYCGRG	1 cut(s)	931
BmgT120I	GGNCC	3 cut(s)	625, 687, 987
BmiI	GGNNCC	3 cut(s)	316, 584, 627
BmrFI	CCNGG	2 cut(s)	167, 447
BmsI	GCATC	2 cut(s)	351, 432
BpiI	GAAGAC	1 cut(s)	777
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	590
BsaJI	CCNNGG	6 cut(s)	165, 166, 184, 446, 657, 690
Bsc4I	CCNNNNNNNGG	3 cut(s)	599, 684, 696
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	167, 447
BseDI	CCNNGG	6 cut(s)	165, 166, 184, 446, 657, 690
BseGI	GGATG	3 cut(s)	64, 913, 949
BseLI	CCNNNNNNNGG	3 cut(s)	599, 684, 696
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	2 cut(s)	133, 173
BseXI	GCAGC	1 cut(s)	376
Bsh1236I	CGCG	2 cut(s)	41, 322
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	6 cut(s)	541, 656, 827, 860, 932, 955
BsiHKCI	CYCGRG	1 cut(s)	931
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	4 cut(s)	611, 616, 884, 955
BslI	CCNNNNNNNGG	3 cut(s)	599, 684, 696
BsmAI	GTCTC	2 cut(s)	568, 791
BsmFI	GGGAC	4 cut(s)	611, 616, 884, 955
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	931
Bsp1286I	GDGCHC	6 cut(s)	541, 656, 827, 860, 932, 955
Bsp143I	GATC	6 cut(s)	172, 582, 755, 788, 891, 1000
Bsp19I	CCATGG	2 cut(s)	657, 690
BspACI	CCGC	8 cut(s)	6, 12, 41, 53, 77, 107, 147, 961
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	787
BspFNI	CGCG	2 cut(s)	41, 322
BspLI	GGNNCC	3 cut(s)	316, 584, 627
BspPI	GGATC	4 cut(s)	167, 577, 590, 899
BspT107I	GGYRCC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	6 cut(s)	165, 166, 184, 446, 657, 690
BssMI	GATC	6 cut(s)	172, 582, 755, 788, 891, 1000
BssT1I	CCWWGG	2 cut(s)	657, 690
Bst2UI	CCWGG	2 cut(s)	167, 447
Bst4CI	ACNGT	3 cut(s)	92, 776, 980
Bst6I	CTCTTC	2 cut(s)	252, 514
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	151, 369, 951
BstDEI	CTNAG	1 cut(s)	795
BstDSI	CCRYGG	2 cut(s)	657, 690
BstEII	GGTNACC	1 cut(s)	215
BstF5I	GGATG	3 cut(s)	64, 913, 949
BstFNI	CGCG	2 cut(s)	41, 322
BstH2I	RGCGCY	1 cut(s)	880
BstHHI	GCGC	2 cut(s)	291, 879
BstKTI	GATC	6 cut(s)	175, 585, 758, 791, 894, 1003
BstMAI	GTCTC	2 cut(s)	568, 791
BstMBI	GATC	6 cut(s)	172, 582, 755, 788, 891, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 442, 1002
BstNI	CCWGG	2 cut(s)	167, 447
BstNSI	RCATGY	2 cut(s)	613, 712
BstPI	GGTNACC	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	165, 445
BstUI	CGCG	2 cut(s)	41, 322
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	777
BstX2I	RGATCY	3 cut(s)	582, 755, 891
BstYI	RGATCY	3 cut(s)	582, 755, 891
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	2 cut(s)	657, 690
BtsCI	GGATG	3 cut(s)	64, 913, 949
Cac8I	GCNNGC	3 cut(s)	151, 369, 951
CfoI	GCGC	2 cut(s)	291, 879
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	625, 687, 987
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	2 cut(s)	93, 675
CviAII	CATG	4 cut(s)	610, 658, 691, 709
CviQI	GTAC	2 cut(s)	93, 675
DdeI	CTNAG	1 cut(s)	795
DpnI	GATC	6 cut(s)	174, 584, 757, 790, 893, 1002
DpnII	GATC	6 cut(s)	172, 582, 755, 788, 891, 1000
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	252, 514
EarI	CTCTTC	2 cut(s)	252, 514
EciI	GGCGGA	2 cut(s)	27, 136
Ecl136II	GAGCTC	5 cut(s)	539, 654, 825, 858, 930
Eco130I	CCWWGG	2 cut(s)	657, 690
Eco24I	GRGCYC	5 cut(s)	541, 656, 827, 860, 932
Eco47I	GGWCC	3 cut(s)	625, 687, 987
Eco47III	AGCGCT	1 cut(s)	878
Eco53kI	GAGCTC	5 cut(s)	539, 654, 825, 858, 930
Eco88I	CYCGRG	1 cut(s)	931
Eco91I	GGTNACC	1 cut(s)	215
EcoICRI	GAGCTC	5 cut(s)	539, 654, 825, 858, 930
EcoO109I	RGGNCCY	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	165, 445
EcoT14I	CCWWGG	2 cut(s)	657, 690
EcoT38I	GRGCYC	5 cut(s)	541, 656, 827, 860, 932
ErhI	CCWWGG	2 cut(s)	657, 690
FaeI	CATG	4 cut(s)	613, 661, 694, 712
FaqI	GGGAC	4 cut(s)	611, 616, 884, 955
FatI	CATG	4 cut(s)	609, 657, 690, 708
FauI	CCCGC	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	365, 962
FokI	GGATG	3 cut(s)	51, 920, 956
FriOI	GRGCYC	5 cut(s)	541, 656, 827, 860, 932
Fsp4HI	GCNGC	2 cut(s)	365, 962
FspBI	CTAG	4 cut(s)	596, 639, 861, 897
GlaI	GCGC	2 cut(s)	290, 878
GluI	GCNGC	2 cut(s)	365, 962
GsuI	CTGGAG	1 cut(s)	590
HaeII	RGCGCY	1 cut(s)	880
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	2 cut(s)	291, 879
Hin1II	CATG	4 cut(s)	613, 661, 694, 712
Hin6I	GCGC	2 cut(s)	289, 877
HinP1I	GCGC	2 cut(s)	289, 877
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HinfI	GANTC	4 cut(s)	70, 404, 454, 494
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	5 cut(s)	209, 223, 377, 606, 968
Hpy166II	GTNNAC	4 cut(s)	25, 124, 832, 990
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	498
Hpy8I	GTNNAC	4 cut(s)	25, 124, 832, 990
HpyAV	CCTTC	4 cut(s)	142, 484, 593, 636
HpyCH4III	ACNGT	3 cut(s)	92, 776, 980
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	201, 364, 714
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 442, 1002
HpyF3I	CTNAG	1 cut(s)	795
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	613, 661, 694, 712
HspAI	GCGC	2 cut(s)	289, 877
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	6 cut(s)	172, 582, 755, 788, 891, 1000
LmnI	GCTCC	8 cut(s)	146, 186, 544, 651, 659, 822, 855, 927
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	351, 432
MaeI	CTAG	4 cut(s)	596, 639, 861, 897
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	5 cut(s)	215, 307, 612, 917, 974
MalI	GATC	6 cut(s)	174, 584, 757, 790, 893, 1002
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	6 cut(s)	172, 582, 755, 788, 891, 1000
MboII	GAAGA	8 cut(s)	239, 474, 531, 615, 680, 749, 782, 815
MflI	RGATCY	3 cut(s)	582, 755, 891
MhlI	GDGCHC	6 cut(s)	541, 656, 827, 860, 932, 955
MroNI	GCCGGC	1 cut(s)	149
MseI	TTAA	2 cut(s)	35, 1009
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	167, 447
MvaI	CCWGG	2 cut(s)	167, 447
MvnI	CGCG	2 cut(s)	41, 322
MwoI	GCNNNNNNNGC	3 cut(s)	249, 442, 1002
NaeI	GCCGGC	1 cut(s)	151
NcoI	CCATGG	2 cut(s)	657, 690
NdeII	GATC	6 cut(s)	172, 582, 755, 788, 891, 1000
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	4 cut(s)	613, 661, 694, 712
NlaIV	GGNNCC	3 cut(s)	316, 584, 627
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	4 cut(s)	215, 612, 917, 974
NspI	RCATGY	2 cut(s)	613, 712
PaeR7I	CTCGAG	1 cut(s)	931
PasI	CCCWGGG	1 cut(s)	166
PciI	ACATGT	2 cut(s)	609, 708
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	4 cut(s)	70, 404, 454, 494
PkrI	GCNGC	2 cut(s)	366, 963
PpuMI	RGGWCCY	1 cut(s)	625
PscI	ACATGT	2 cut(s)	609, 708
Psp124BI	GAGCTC	5 cut(s)	541, 656, 827, 860, 932
Psp5II	RGGWCCY	1 cut(s)	625
Psp6I	CCWGG	2 cut(s)	165, 445
PspEI	GGTNACC	1 cut(s)	215
PspGI	CCWGG	2 cut(s)	165, 445
PspN4I	GGNNCC	3 cut(s)	316, 584, 627
PspPI	GGNCC	3 cut(s)	625, 687, 987
PspPPI	RGGWCCY	1 cut(s)	625
PspXI	VCTCGAGB	1 cut(s)	931
PsuI	RGATCY	3 cut(s)	582, 755, 891
RsaI	GTAC	2 cut(s)	94, 676
RsaNI	GTAC	2 cut(s)	93, 675
SacI	GAGCTC	5 cut(s)	541, 656, 827, 860, 932
SaqAI	TTAA	2 cut(s)	35, 1009
SatI	GCNGC	2 cut(s)	365, 962
Sau3AI	GATC	6 cut(s)	172, 582, 755, 788, 891, 1000
Sau96I	GGNCC	3 cut(s)	625, 687, 987
ScrFI	CCNGG	2 cut(s)	167, 447
SduI	GDGCHC	6 cut(s)	541, 656, 827, 860, 932, 955
SfaNI	GCATC	2 cut(s)	351, 432
Sfr274I	CTCGAG	1 cut(s)	931
SinI	GGWCC	3 cut(s)	625, 687, 987
SlaI	CTCGAG	1 cut(s)	931
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
SsiI	CCGC	8 cut(s)	6, 12, 41, 53, 77, 107, 147, 961
SspMI	CTAG	4 cut(s)	596, 639, 861, 897
SstI	GAGCTC	5 cut(s)	541, 656, 827, 860, 932
StyD4I	CCNGG	2 cut(s)	165, 445
StyI	CCWWGG	2 cut(s)	657, 690
TaaI	ACNGT	3 cut(s)	92, 776, 980
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	535, 932
TaqII	GACCGA	1 cut(s)	203
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	4 cut(s)	70, 404, 454, 494
Tru1I	TTAA	2 cut(s)	35, 1009
Tru9I	TTAA	2 cut(s)	35, 1009
TseFI	GTSAC	4 cut(s)	215, 612, 917, 974
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	4 cut(s)	215, 612, 917, 974
TspDTI	ATGAA	1 cut(s)	360
VpaK11BI	GGWCC	3 cut(s)	625, 687, 987
XceI	RCATGY	2 cut(s)	613, 712
XhoI	CTCGAG	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	4 cut(s)	596, 639, 861, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.