FvH4_4g12800

U11 U12 small nuclear ribonucleoprotein 35 kDa

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
16473333 .. 16477167
3835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12800.t3

Sequence Viewer

Length: 1092 bp
ATGAGAAAGACGGAGGCGGTGTTCTACGCGGAGACGTACCATCCCATCCAGGCCGGTAGCATCGACGGTACCGACACTCTCCCTCACGACAGCGCCGTCTACCGCGCCTGGCTCTGCTCCTCGGCCGCCCTCTATGACCCCTCCGGCGATCCTAAGCTCCTCGGCGACCCCTACTGCACTCTCTTCGTCGGCCGCCTCTCTCACCTCACCACCGAAGACACTCTCCGCCAGGCTATGAGCAAGTATGGTCGAGTTAAGAAGTTGCGTTTGGTCAGACATATTGTGACCGGTGCCTCGCGTGGCTATGCTTTTGTTGAATTTGAAACCGAGAGGGGGATGCGGCGTGCATACAAGGAAGCACATCATTCCCTTGTTGATGATTATGAAATTATCGTGGATTACAATAGGCAGCAGTTGATGCCAGGATGGATTCCTAGACGATTAGGAGGGGGTTTTGGTGGTAAGAAGGAATCTGGACAACTTCGTTTTGGAGGACGAGAAAGACCATTTCGAGCTCCCATTCGTATCCCATATGATGATCTGAAGAAACTTGGAATCCCACCTATACCAGAAGGACGATACATGTCCCGGCATCAGGACCCATCACCACCTAGAAGAAAAAGAAGCTCAGTAGATAGGGAAGAAGGTACTCGCAGAAGGTCAGTTGATAGGGAAGTGAACATACGCAAAAGCAATCCTGTGGATAAGGACGACAGGTTTCACAAAAGACCTATGGATGGTGATTATCACTCATCCAAAAGGAGCTCTGATGAGTCAGCTCAACACCATCGCAGTAGGAGCTCTAGAGATAGAGAAGAAGGTACTCACAGAAAGTCCAGTGATAGGGAAGAAAGCATGCCCAAAAGCAGTCATGTTGATAAGGAAGAATCCTTTCGTAAAAGATCTATGGATCGGGAGGACCATACATTTAAAAGGAGCGCTGTTGAGACCGAAGAATTCCATCGCAGTAGGAGATCTGTGGACACGGAAAAGCGTTCACACAAAAGGAGCTCTAGGGATAGAGATGACCGTTCTCACAAGCGGCACAAGTCCCGTCACCGTGAGAGGTCTACTAGTTATGATCGGTCTTAA

Protein Analysis

364

Amino Acids

42.52

Weight (kDa)

9.98

Isoelectric Point (pI)

80.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 61 - 130 5.2e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
Acc65I GGTACC 1 cut(s) 68
AccB1I GGYRCC 2 cut(s) 68, 290
AccI GTMKAC 2 cut(s) 99, 1070
AccII CGCG 3 cut(s) 29, 105, 298
AciI CCGC 8 cut(s) 17, 29, 103, 126, 193, 226, 340, 1042
AclWI GGATC 2 cut(s) 143, 918
AcoI YGGCCR 2 cut(s) 123, 190
AcsI RAATTY 2 cut(s) 317, 956
AcuI CTGAAG 1 cut(s) 563
AfaI GTAC 4 cut(s) 38, 70, 649, 823
AfeI AGCGCT 1 cut(s) 940
AfiI CCNNNNNNNGG 4 cut(s) 333, 595, 737, 843
AflIII ACRYGT 1 cut(s) 582
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 2 cut(s) 317, 323
AhlI ACTAGT 1 cut(s) 1073
AjnI CCWGG 4 cut(s) 48, 107, 228, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 7 cut(s) 157, 515, 627, 765, 779, 801, 1011
AluI AGCT 7 cut(s) 157, 515, 627, 765, 779, 801, 1011
Alw21I GWGCWC 4 cut(s) 517, 767, 803, 1013
Alw26I GTCTC 2 cut(s) 26, 941
AlwI GGATC 2 cut(s) 143, 918
Aor51HI AGCGCT 1 cut(s) 940
AoxI GGCC 3 cut(s) 51, 123, 190
ApeKI GCWGC 1 cut(s) 409
ApoI RAATTY 2 cut(s) 317, 956
AsiGI ACCGGT 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 891
Asp718I GGTACC 1 cut(s) 68
AspLEI GCGC 3 cut(s) 95, 107, 941
AspS9I GGNCC 2 cut(s) 598, 919
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 5 cut(s) 194, 199, 597, 752, 1049
AvaII GGWCC 2 cut(s) 598, 919
BanI GGYRCC 2 cut(s) 68, 290
BanII GRGCYC 4 cut(s) 517, 767, 803, 1013
BarI GAAGNNNNNNTAC 2 cut(s) 666, 698
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 4 cut(s) 517, 767, 803, 1013
BbvI GCAGC 1 cut(s) 421
BccI CCATC 7 cut(s) 48, 53, 420, 610, 731, 795, 969
BceAI ACGGC 1 cut(s) 80
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 4 cut(s) 50, 109, 230, 423
BciVI GTATCC 1 cut(s) 536
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 2 cut(s) 26, 941
BcuI ACTAGT 1 cut(s) 1073
BfaI CTAG 5 cut(s) 435, 612, 804, 1014, 1074
BfoI RGCGCY 2 cut(s) 96, 942
BfuI GTATCC 1 cut(s) 536
BglII AGATCT 2 cut(s) 902, 974
BisI GCNGC 5 cut(s) 126, 193, 341, 410, 1043
BlsI GCNGC 5 cut(s) 127, 194, 342, 411, 1044
Bme1390I CCNGG 5 cut(s) 50, 109, 230, 423, 589
Bme18I GGWCC 2 cut(s) 598, 919
BmgT120I GGNCC 2 cut(s) 598, 919
BmiI GGNNCC 3 cut(s) 70, 292, 600
BmrFI CCNGG 5 cut(s) 50, 109, 230, 423, 589
BmsI GCATC 4 cut(s) 69, 327, 408, 601
BpiI GAAGAC 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 589
BsaI GGTCTC 1 cut(s) 941
BsaJI CCNNGG 2 cut(s) 120, 160
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 4 cut(s) 333, 595, 737, 843
Bse118I RCCGGY 2 cut(s) 53, 287
Bse1I ACTGG 1 cut(s) 837
BseBI CCWGG 4 cut(s) 50, 109, 230, 423
BseDI CCNNGG 2 cut(s) 120, 160
BseGI GGATG 6 cut(s) 40, 45, 342, 431, 742, 752
BseLI CCNNNNNNNGG 4 cut(s) 333, 595, 737, 843
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 1 cut(s) 837
BseRI GAGGAG 2 cut(s) 109, 149
BseX3I CGGCCG 2 cut(s) 123, 190
BseXI GCAGC 1 cut(s) 421
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 3 cut(s) 29, 105, 298
Bsh1285I CGRYCG 2 cut(s) 126, 193
BshFI GGCC 3 cut(s) 53, 125, 192
BshNI GGYRCC 2 cut(s) 68, 290
BshTI ACCGGT 1 cut(s) 287
BsiEI CGRYCG 2 cut(s) 126, 193
BsiHKAI GWGCWC 4 cut(s) 517, 767, 803, 1013
BsiSI CCGG 4 cut(s) 54, 144, 288, 589
BslFI GGGAC 2 cut(s) 571, 1036
BslI CCNNNNNNNGG 4 cut(s) 333, 595, 737, 843
BsmAI GTCTC 2 cut(s) 26, 941
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 571, 1036
BsnI GGCC 3 cut(s) 53, 125, 192
Bso31I GGTCTC 1 cut(s) 941
Bsp1286I GDGCHC 4 cut(s) 517, 767, 803, 1013
Bsp143I GATC 6 cut(s) 148, 538, 902, 910, 974, 1081
BspACI CCGC 8 cut(s) 17, 29, 103, 126, 193, 226, 340, 1042
BspANI GGCC 3 cut(s) 53, 125, 192
BspCNI CTCAG 1 cut(s) 641
BspFNI CGCG 3 cut(s) 29, 105, 298
BspLI GGNNCC 3 cut(s) 70, 292, 600
BspPI GGATC 2 cut(s) 143, 918
BspT107I GGYRCC 2 cut(s) 68, 290
BspTNI GGTCTC 1 cut(s) 941
BsrFI RCCGGY 2 cut(s) 53, 287
BsrI ACTGG 1 cut(s) 837
BssAI RCCGGY 2 cut(s) 53, 287
BssECI CCNNGG 2 cut(s) 120, 160
BssMI GATC 6 cut(s) 148, 538, 902, 910, 974, 1081
Bst2UI CCWGG 4 cut(s) 50, 109, 230, 423
Bst4CI ACNGT 3 cut(s) 68, 1031, 1061
Bst6I CTCTTC 1 cut(s) 188
BstAPI GCANNNNNTGC 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 345, 857
BstDEI CTNAG 2 cut(s) 153, 628
BstF5I GGATG 6 cut(s) 40, 45, 342, 431, 742, 752
BstFNI CGCG 3 cut(s) 29, 105, 298
BstH2I RGCGCY 2 cut(s) 96, 942
BstHHI GCGC 3 cut(s) 95, 107, 941
BstKTI GATC 6 cut(s) 151, 541, 905, 913, 977, 1084
BstMAI GTCTC 2 cut(s) 26, 941
BstMBI GATC 6 cut(s) 148, 538, 902, 910, 974, 1081
BstMCI CGRYCG 2 cut(s) 126, 193
BstMWI GCNNNNNNNGC 2 cut(s) 418, 798
BstNI CCWGG 4 cut(s) 50, 109, 230, 423
BstNSI RCATGY 2 cut(s) 586, 859
BstSCI CCNGG 5 cut(s) 48, 107, 228, 421, 587
BstUI CGCG 3 cut(s) 29, 105, 298
BstV1I GCAGC 1 cut(s) 421
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 902, 974
BstYI RGATCY 2 cut(s) 902, 974
BstZI CGGCCG 2 cut(s) 123, 190
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 3 cut(s) 53, 125, 192
BtgZI GCGATG 2 cut(s) 773, 947
BtsCI GGATG 6 cut(s) 40, 45, 342, 431, 742, 752
BtsIMutI CAGTG 1 cut(s) 844
Cac8I GCNNGC 2 cut(s) 345, 857
CfoI GCGC 3 cut(s) 95, 107, 941
Cfr10I RCCGGY 2 cut(s) 53, 287
Cfr13I GGNCC 2 cut(s) 598, 919
Csp6I GTAC 4 cut(s) 37, 69, 648, 822
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 3 cut(s) 583, 856, 872
CviQI GTAC 4 cut(s) 37, 69, 648, 822
DdeI CTNAG 2 cut(s) 153, 628
DpnI GATC 6 cut(s) 150, 540, 904, 912, 976, 1083
DpnII GATC 6 cut(s) 148, 538, 902, 910, 974, 1081
DraI TTTAAA 1 cut(s) 931
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 2 cut(s) 123, 190
EagI CGGCCG 2 cut(s) 123, 190
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 4 cut(s) 515, 765, 801, 1011
EclXI CGGCCG 2 cut(s) 123, 190
Eco24I GRGCYC 4 cut(s) 517, 767, 803, 1013
Eco31I GGTCTC 1 cut(s) 941
Eco47I GGWCC 2 cut(s) 598, 919
Eco47III AGCGCT 1 cut(s) 940
Eco52I CGGCCG 2 cut(s) 123, 190
Eco53kI GAGCTC 4 cut(s) 515, 765, 801, 1011
Eco57I CTGAAG 1 cut(s) 563
EcoICRI GAGCTC 4 cut(s) 515, 765, 801, 1011
EcoO109I RGGNCCY 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 956
EcoRII CCWGG 4 cut(s) 48, 107, 228, 421
EcoT38I GRGCYC 4 cut(s) 517, 767, 803, 1013
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 3 cut(s) 586, 859, 875
FaqI GGGAC 2 cut(s) 571, 1036
FatI CATG 3 cut(s) 582, 855, 871
FauNDI CATATG 1 cut(s) 532
FblI GTMKAC 2 cut(s) 99, 1070
Fnu4HI GCNGC 5 cut(s) 126, 193, 341, 410, 1043
FokI GGATG 6 cut(s) 27, 32, 349, 438, 739, 749
FriOI GRGCYC 4 cut(s) 517, 767, 803, 1013
Fsp4HI GCNGC 5 cut(s) 126, 193, 341, 410, 1043
FspBI CTAG 5 cut(s) 435, 612, 804, 1014, 1074
GlaI GCGC 3 cut(s) 94, 106, 940
GluI GCNGC 5 cut(s) 126, 193, 341, 410, 1043
HaeII RGCGCY 2 cut(s) 96, 942
HaeIII GGCC 3 cut(s) 53, 125, 192
HapII CCGG 4 cut(s) 54, 144, 288, 589
HhaI GCGC 3 cut(s) 95, 107, 941
Hin1II CATG 3 cut(s) 586, 859, 875
Hin6I GCGC 3 cut(s) 93, 105, 939
HinP1I GCGC 3 cut(s) 93, 105, 939
HinfI GANTC 5 cut(s) 430, 470, 555, 773, 887
HpaII CCGG 4 cut(s) 54, 144, 288, 589
HphI GGTGA 5 cut(s) 194, 199, 597, 752, 1049
Hpy166II GTNNAC 5 cut(s) 100, 679, 982, 998, 1071
Hpy188I TCNGA 3 cut(s) 275, 543, 769
Hpy188III TCNNGA 5 cut(s) 86, 474, 596, 804, 914
Hpy8I GTNNAC 5 cut(s) 100, 679, 982, 998, 1071
Hpy99I CGWCG 2 cut(s) 68, 191
HpyAV CCTTC 5 cut(s) 460, 566, 638, 651, 812
HpyCH4III ACNGT 3 cut(s) 68, 1031, 1061
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 177, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 798
HpyF3I CTNAG 2 cut(s) 153, 628
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 3 cut(s) 586, 859, 875
HspAI GCGC 3 cut(s) 93, 105, 939
KpnI GGTACC 1 cut(s) 72
Kzo9I GATC 6 cut(s) 148, 538, 902, 910, 974, 1081
LmnI GCTCC 7 cut(s) 122, 162, 520, 762, 798, 936, 1008
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 4 cut(s) 69, 327, 408, 601
MaeI CTAG 5 cut(s) 435, 612, 804, 1014, 1074
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 283, 1055
MalI GATC 6 cut(s) 150, 540, 904, 912, 976, 1083
MboI GATC 6 cut(s) 148, 538, 902, 910, 974, 1081
MboII GAAGA 9 cut(s) 175, 227, 556, 627, 653, 827, 860, 896, 965
MflI RGATCY 2 cut(s) 902, 974
MhlI GDGCHC 4 cut(s) 517, 767, 803, 1013
MluCI AATT 3 cut(s) 317, 387, 956
MlyI GAGTC 1 cut(s) 782
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 3 cut(s) 255, 930, 1090
MspI CCGG 4 cut(s) 54, 144, 288, 589
MspR9I CCNGG 5 cut(s) 50, 109, 230, 423, 589
MvaI CCWGG 4 cut(s) 50, 109, 230, 423
MvnI CGCG 3 cut(s) 29, 105, 298
MwoI GCNNNNNNNGC 2 cut(s) 418, 798
NciI CCSGG 1 cut(s) 589
NdeI CATATG 1 cut(s) 532
NdeII GATC 6 cut(s) 148, 538, 902, 910, 974, 1081
NlaIII CATG 3 cut(s) 586, 859, 875
NlaIV GGNNCC 3 cut(s) 70, 292, 600
NmeAIII GCCGAG 2 cut(s) 101, 141
NmuCI GTSAC 2 cut(s) 283, 1055
NspI RCATGY 2 cut(s) 586, 859
PaeI GCATGC 1 cut(s) 859
PciI ACATGT 1 cut(s) 582
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 93
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 4 cut(s) 430, 470, 555, 887
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 5 cut(s) 127, 194, 342, 411, 1044
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
PpuMI RGGWCCY 1 cut(s) 598
PscI ACATGT 1 cut(s) 582
Psp124BI GAGCTC 4 cut(s) 517, 767, 803, 1013
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 4 cut(s) 48, 107, 228, 421
PspGI CCWGG 4 cut(s) 48, 107, 228, 421
PspN4I GGNNCC 3 cut(s) 70, 292, 600
PspPI GGNCC 2 cut(s) 598, 919
PspPPI RGGWCCY 1 cut(s) 598
PsuI RGATCY 2 cut(s) 902, 974
RsaI GTAC 4 cut(s) 38, 70, 649, 823
RsaNI GTAC 4 cut(s) 37, 69, 648, 822
SacI GAGCTC 4 cut(s) 517, 767, 803, 1013
SaqAI TTAA 3 cut(s) 255, 930, 1090
SatI GCNGC 5 cut(s) 126, 193, 341, 410, 1043
Sau3AI GATC 6 cut(s) 148, 538, 902, 910, 974, 1081
Sau96I GGNCC 2 cut(s) 598, 919
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 5 cut(s) 50, 109, 230, 423, 589
SduI GDGCHC 4 cut(s) 517, 767, 803, 1013
SfaNI GCATC 4 cut(s) 69, 327, 408, 601
SinI GGWCC 2 cut(s) 598, 919
SpeI ACTAGT 1 cut(s) 1073
SphI GCATGC 1 cut(s) 859
Sse9I AATT 3 cut(s) 317, 387, 956
SsiI CCGC 8 cut(s) 17, 29, 103, 126, 193, 226, 340, 1042
SspMI CTAG 5 cut(s) 435, 612, 804, 1014, 1074
SstI GAGCTC 4 cut(s) 517, 767, 803, 1013
StyD4I CCNGG 5 cut(s) 48, 107, 228, 421, 587
TaaI ACNGT 3 cut(s) 68, 1031, 1061
TaiI ACGT 1 cut(s) 38
TaqI TCGA 3 cut(s) 63, 250, 511
TaqII GACCGA 2 cut(s) 965, 1074
TasI AATT 3 cut(s) 317, 387, 956
TauI GCSGC 4 cut(s) 128, 195, 343, 1045
TfiI GAWTC 4 cut(s) 430, 470, 555, 887
Tru1I TTAA 3 cut(s) 255, 930, 1090
Tru9I TTAA 3 cut(s) 255, 930, 1090
TscAI CASTG 1 cut(s) 844
TseFI GTSAC 2 cut(s) 283, 1055
TseI GCWGC 1 cut(s) 409
Tsp45I GTSAC 2 cut(s) 283, 1055
TspDTI ATGAA 1 cut(s) 399
TspGWI ACGGA 2 cut(s) 26, 1001
TspRI CASTG 1 cut(s) 844
VpaK11BI GGWCC 2 cut(s) 598, 919
XapI RAATTY 2 cut(s) 317, 956
XbaI TCTAGA 1 cut(s) 803
XceI RCATGY 2 cut(s) 586, 859
XmiI GTMKAC 2 cut(s) 99, 1070
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 5 cut(s) 435, 612, 804, 1014, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.