AT2G43480

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015393
Physical Location & Seq
Forward (+)
18052967 .. 18054417
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43480.1

Sequence Viewer

Length: 1008 bp
ATGGTTATGATTCATATCTTCCTCACCGTGATGGTGGTTGGAGGCGTCAGTCTCTTCCCGGAGACGGCAGAAGCGATCGTGATGGGACCGTCGATGCAGAAGCTGACGTGGCATTACTATAAAGTTTACAACACTTGCGAGAATGCAGAGAATTTTGTGAGGCACCAAGTTGAGATATTTTACAAGAACGATAAAAGTATTGCTCCTAAGCTCCTTCGTCTCCTCTACTCAGACTGCTTTGTTTCCGGATGCGATGCATCAGTTCTTCTAGAAGGTCCAAACTCAGAGAAAATGGCGCCACAAAACAGAGGACTTGGAGGATTCGTTCTCATAGACAAAATCAAAATAGTCTTGGAACAGAGATGTCCTGGTGTTGTCTCTTGCGCCGACATTCTTAATCTTGCAACTCGTGATGCTGTTCATTTGGCGGGTGCACCATCTTATCCTGTGTTCACAGGCAGGAGAGATGGTTTGACGTCTGATAAGCAAACCGTGGACCTACCATCGCCATCCATCTCATGGGACCAAGCCATGTCTTATTTCAAATCCAGAGGCTTGAATGTTCTTGACATGGCTACACTTCTAGGATCACATTCAATGGGGAGAACACATTGCAGCTATGTTGTTGATCGACTCTACAATTACAACAAGACCGGTAAACCAAGCCCTACTATGAACAAGTATTTCCTATCTGAAATGGCAAAGCAATGTCCTCCAAGAACGAGGAAAGGCCAGACCGATCCGCTCGTGTACCTAAACCCGGACTCAGGCTCAAACCACAGCTTCACAAGCTCATTTTACTCAAGAATTCTATCAAACAAATCTGTACTTGAAGTAGATCAACAACTGCTTTACAATGATGACACCAAGCAAATATCTAAGGAATTCTCAGAGGGTTTCGAGGATTTTCGGAAATCATTTGCTCTTTCGATGAGCAAGATGGGAGCGATAAATGTGTTAACTAAAACGGAAGGTGAGATACGAAAAGATTGCAGGCATATAAACTAA

Protein Analysis

335

Amino Acids

37.57

Weight (kDa)

8.5

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 297 2e-71 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43480 AT5G24070
fragaria_vesca FvH4_3g26850
malus_domestica MD04G1046400.v1.1
prunus_persica Prupe.1G199900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407891
rosa_laevigata RLG00000008691
rosa_multiflora Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii Rroxscaffold_5G00352430
rosa_rugosa Rorug04G0082000
rosa_samantha Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana Rw4G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 479
AccB1I GGYRCC 2 cut(s) 162, 295
AccB7I CCANNNNNTGG 1 cut(s) 519
AccBSI CCGCTC 1 cut(s) 745
AccIII TCCGGA 1 cut(s) 245
AciI CCGC 2 cut(s) 428, 743
AclWI GGATC 2 cut(s) 595, 734
AcsI RAATTY 3 cut(s) 151, 807, 884
AcyI GRCGYC 3 cut(s) 45, 296, 476
AfaI GTAC 2 cut(s) 752, 828
AfiI CCNNNNNNNGG 4 cut(s) 64, 519, 760, 767
AgeI ACCGGT 1 cut(s) 653
AgsI TTSAA 4 cut(s) 544, 559, 597, 833
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 1 cut(s) 367
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 5 cut(s) 103, 211, 618, 783, 792
AluI AGCT 5 cut(s) 103, 211, 618, 783, 792
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 4 cut(s) 56, 56, 224, 382
Alw44I GTGCAC 1 cut(s) 432
AlwI GGATC 2 cut(s) 595, 734
AlwNI CAGNNNCTG 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 245
AoxI GGCC 1 cut(s) 730
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 615
ApoI RAATTY 3 cut(s) 151, 807, 884
AsiGI ACCGGT 1 cut(s) 653
AspLEI GCGC 2 cut(s) 298, 386
AspS9I GGNCC 4 cut(s) 86, 275, 496, 523
AsuC2I CCSGG 2 cut(s) 59, 761
AsuHPI GGTGA 2 cut(s) 16, 986
AvaII GGWCC 4 cut(s) 86, 275, 496, 523
BaeGI GKGCMC 1 cut(s) 436
BanI GGYRCC 2 cut(s) 162, 295
BarI GAAGNNNNNNTAC 2 cut(s) 963, 995
BauI CACGAG 2 cut(s) 408, 746
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 627
BccI CCATC 8 cut(s) 25, 76, 445, 461, 511, 517, 521, 934
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 972, 1006
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 2 cut(s) 59, 761
BcoDI GTCTC 4 cut(s) 56, 56, 224, 382
BfaI CTAG 2 cut(s) 269, 584
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 1 cut(s) 616
BlsI GCNGC 1 cut(s) 617
Bme1390I CCNGG 3 cut(s) 59, 369, 761
Bme18I GGWCC 4 cut(s) 86, 275, 496, 523
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 4 cut(s) 86, 275, 496, 523
BmiI GGNNCC 4 cut(s) 87, 164, 297, 524
BmrFI CCNGG 3 cut(s) 59, 369, 761
BmsI GCATC 5 cut(s) 84, 239, 244, 266, 403
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 787
BpuMI CCSGG 2 cut(s) 59, 761
BsaBI GATNNNNATC 1 cut(s) 14
BsaHI GRCGYC 3 cut(s) 45, 296, 476
BsaJI CCNNGG 1 cut(s) 492
BsaWI WCCGGW 2 cut(s) 245, 653
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 454, 484
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 519, 760, 767
Bse118I RCCGGY 1 cut(s) 653
Bse3DI GCAATG 2 cut(s) 610, 713
Bse8I GATNNNNATC 1 cut(s) 14
BseAI TCCGGA 1 cut(s) 245
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 2 cut(s) 254, 509
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 4 cut(s) 64, 519, 760, 767
BseMI GCAATG 2 cut(s) 610, 713
BseMII CTCAG 4 cut(s) 243, 297, 780, 903
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 627
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 732
BshNI GGYRCC 2 cut(s) 162, 295
BshTI ACCGGT 1 cut(s) 653
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 4 cut(s) 59, 246, 654, 761
BslFI GGGAC 2 cut(s) 99, 536
BslI CCNNNNNNNGG 4 cut(s) 64, 519, 760, 767
BsmAI GTCTC 4 cut(s) 56, 56, 224, 382
BsmBI CGTCTC 2 cut(s) 56, 224
BsmFI GGGAC 2 cut(s) 99, 536
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 436
Bsp13I TCCGGA 1 cut(s) 245
Bsp143I GATC 5 cut(s) 75, 587, 628, 739, 838
BspACI CCGC 2 cut(s) 428, 743
BspANI GGCC 1 cut(s) 732
BspCNI CTCAG 4 cut(s) 242, 296, 779, 902
BspEI TCCGGA 1 cut(s) 245
BspLI GGNNCC 4 cut(s) 87, 164, 297, 524
BspPI GGATC 2 cut(s) 595, 734
BspT107I GGYRCC 2 cut(s) 162, 295
BsrBI CCGCTC 1 cut(s) 745
BsrDI GCAATG 2 cut(s) 610, 713
BsrFI RCCGGY 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 5 cut(s) 75, 587, 628, 739, 838
BssNI GRCGYC 3 cut(s) 45, 296, 476
BssSI CACGAG 2 cut(s) 408, 746
Bst2BI CACGAG 2 cut(s) 408, 746
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 3 cut(s) 28, 90, 493
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 3 cut(s) 45, 296, 476
BstC8I GCNNGC 1 cut(s) 995
BstDEI CTNAG 6 cut(s) 207, 229, 283, 766, 879, 889
BstDSI CCRYGG 1 cut(s) 492
BstF5I GGATG 2 cut(s) 254, 509
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 2 cut(s) 298, 386
BstKTI GATC 5 cut(s) 78, 590, 631, 742, 841
BstMAI GTCTC 4 cut(s) 56, 56, 224, 382
BstMBI GATC 5 cut(s) 75, 587, 628, 739, 838
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 109, 789
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 3 cut(s) 57, 367, 759
BstSLI GKGCMC 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 627
BsuRI GGCC 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 492
BtgZI GCGATG 2 cut(s) 267, 489
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 254, 509
Cac8I GCNNGC 1 cut(s) 995
CaiI CAGNNNCTG 1 cut(s) 103
CfoI GCGC 2 cut(s) 298, 386
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 4 cut(s) 86, 275, 496, 523
CseI GACGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 751, 827
CspAI ACCGGT 1 cut(s) 653
CviAII CATG 3 cut(s) 519, 532, 571
CviQI GTAC 2 cut(s) 751, 827
DdeI CTNAG 6 cut(s) 207, 229, 283, 766, 879, 889
DinI GGCGCC 1 cut(s) 297
DpnI GATC 5 cut(s) 77, 589, 630, 741, 840
DpnII GATC 5 cut(s) 75, 587, 628, 739, 838
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco47I GGWCC 4 cut(s) 86, 275, 496, 523
EcoRI GAATTC 2 cut(s) 807, 884
EcoRII CCWGG 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 259
EgeI GGCGCC 1 cut(s) 297
EheI GGCGCC 1 cut(s) 297
Esp3I CGTCTC 2 cut(s) 56, 224
FaeI CATG 3 cut(s) 522, 535, 574
FaqI GGGAC 2 cut(s) 99, 536
FatI CATG 3 cut(s) 518, 531, 570
FauI CCCGC 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 616
FokI GGATG 2 cut(s) 261, 496
Fsp4HI GCNGC 1 cut(s) 616
FspBI CTAG 2 cut(s) 269, 584
GlaI GCGC 2 cut(s) 297, 385
GluI GCNGC 1 cut(s) 616
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 1 cut(s) 732
HapII CCGG 4 cut(s) 59, 246, 654, 761
HgaI GACGC 1 cut(s) 34
HhaI GCGC 2 cut(s) 298, 386
Hin1I GRCGYC 3 cut(s) 45, 296, 476
Hin1II CATG 3 cut(s) 522, 535, 574
Hin6I GCGC 2 cut(s) 296, 384
HinP1I GCGC 2 cut(s) 296, 384
HincII GTYRAC 1 cut(s) 960
HindII GTYRAC 1 cut(s) 960
HinfI GANTC 4 cut(s) 10, 321, 633, 764
HpaI GTTAAC 1 cut(s) 960
HpaII CCGG 4 cut(s) 59, 246, 654, 761
HphI GGTGA 2 cut(s) 16, 986
Hpy166II GTNNAC 7 cut(s) 127, 434, 453, 496, 659, 751, 960
Hpy188I TCNGA 6 cut(s) 232, 286, 481, 694, 892, 912
Hpy188III TCNNGA 7 cut(s) 79, 246, 269, 410, 549, 566, 804
Hpy8I GTNNAC 7 cut(s) 127, 434, 453, 496, 659, 751, 960
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 224, 266, 965
HpyCH4III ACNGT 3 cut(s) 28, 90, 493
HpyCH4IV ACGT 2 cut(s) 107, 476
HpyCH4V TGCA 7 cut(s) 97, 146, 257, 404, 434, 615, 993
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 789
HpyF3I CTNAG 6 cut(s) 207, 229, 283, 766, 879, 889
HpySE526I ACGT 2 cut(s) 107, 476
Hsp92I GRCGYC 3 cut(s) 45, 296, 476
Hsp92II CATG 3 cut(s) 522, 535, 574
HspAI GCGC 2 cut(s) 296, 384
KasI GGCGCC 1 cut(s) 295
Kpn2I TCCGGA 1 cut(s) 245
KspAI GTTAAC 1 cut(s) 960
Kzo9I GATC 5 cut(s) 75, 587, 628, 739, 838
LmnI GCTCC 3 cut(s) 208, 216, 944
Lsp1109I GCAGC 1 cut(s) 627
LweI GCATC 5 cut(s) 84, 239, 244, 266, 403
MaeI CTAG 2 cut(s) 269, 584
MaeII ACGT 2 cut(s) 107, 476
MalI GATC 5 cut(s) 77, 589, 630, 741, 840
MbiI CCGCTC 1 cut(s) 745
MboI GATC 5 cut(s) 75, 587, 628, 739, 838
MboII GAAGA 3 cut(s) 10, 46, 257
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 4 cut(s) 151, 640, 807, 884
Mly113I GGCGCC 1 cut(s) 296
MlyI GAGTC 2 cut(s) 627, 758
MmeI TCCRAC 1 cut(s) 19
Mph1103I ATGCAT 1 cut(s) 259
MroI TCCGGA 1 cut(s) 245
MseI TTAA 2 cut(s) 396, 959
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 4 cut(s) 59, 246, 654, 761
MspR9I CCNGG 3 cut(s) 59, 369, 761
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 2 cut(s) 109, 789
NarI GGCGCC 1 cut(s) 296
NciI CCSGG 2 cut(s) 59, 761
NdeII GATC 5 cut(s) 75, 587, 628, 739, 838
NlaIII CATG 3 cut(s) 522, 535, 574
NlaIV GGNNCC 4 cut(s) 87, 164, 297, 524
NsiI ATGCAT 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 10, 321
PflMI CCANNNNNTGG 1 cut(s) 519
PfoI TCCNGGA 1 cut(s) 57
PinAI ACCGGT 1 cut(s) 653
PkrI GCNGC 1 cut(s) 617
Ple19I CGATCG 1 cut(s) 78
PleI GAGTC 2 cut(s) 627, 758
PluTI GGCGCC 1 cut(s) 299
PpsI GAGTC 2 cut(s) 627, 758
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 4 cut(s) 87, 164, 297, 524
PspPI GGNCC 4 cut(s) 86, 275, 496, 523
PstNI CAGNNNCTG 1 cut(s) 103
PvuI CGATCG 1 cut(s) 78
RsaI GTAC 2 cut(s) 752, 828
RsaNI GTAC 2 cut(s) 751, 827
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 2 cut(s) 396, 959
SatI GCNGC 1 cut(s) 616
Sau3AI GATC 5 cut(s) 75, 587, 628, 739, 838
Sau96I GGNCC 4 cut(s) 86, 275, 496, 523
SchI GAGTC 2 cut(s) 627, 758
ScrFI CCNGG 3 cut(s) 59, 369, 761
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 5 cut(s) 84, 239, 244, 266, 403
SfoI GGCGCC 1 cut(s) 297
SinI GGWCC 4 cut(s) 86, 275, 496, 523
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 802
SmoI CTYRAG 1 cut(s) 802
Sse9I AATT 4 cut(s) 151, 640, 807, 884
SsiI CCGC 2 cut(s) 428, 743
SspDI GGCGCC 1 cut(s) 295
SspMI CTAG 2 cut(s) 269, 584
StyD4I CCNGG 3 cut(s) 57, 367, 759
TaaI ACNGT 3 cut(s) 28, 90, 493
TaiI ACGT 2 cut(s) 110, 479
TaqI TCGA 4 cut(s) 92, 631, 900, 929
TaqII GACCGA 1 cut(s) 752
TasI AATT 4 cut(s) 151, 640, 807, 884
TatI WGTACW 1 cut(s) 826
TfiI GAWTC 2 cut(s) 10, 321
Tru1I TTAA 2 cut(s) 396, 959
Tru9I TTAA 2 cut(s) 396, 959
TseI GCWGC 1 cut(s) 615
TspDTI ATGAA 2 cut(s) 410, 689
TspGWI ACGGA 1 cut(s) 983
Van91I CCANNNNNTGG 1 cut(s) 519
VneI GTGCAC 1 cut(s) 432
VpaK11BI GGWCC 4 cut(s) 86, 275, 496, 523
XapI RAATTY 3 cut(s) 151, 807, 884
XbaI TCTAGA 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 516
XspI CTAG 2 cut(s) 269, 584
ZraI GACGTC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.