Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015393

Physical Location & Seq

Genomic Coordinates Forward (+)

5396644 .. 5399902

Gene Structure 3259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1046400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAGAAGCCAGATGAGATTTGTGCTTCTCGTGCTCCCATTTTTGGGTGTGGTTGCAGTGAGCTTCTGTCTAGGGTTTGTGAGTGCAGATGGTTCGACAGTGCCAAGGCCGAAGTTGACTTGGCATTACTACAAAATTCACAATACTTGTGATGATGCAGAGGTTTATATCCGGCACCAAGTGGAGTTGTTTTGGAAAAAGGATAAAAGCATCACTCCCAAGCTCCTCCGGTTGGTCTACTCAGATTGCTTTGTAACGGGTTGTGATGCATCAATCCTCCTTGATGGTGAAGACTCAGAAAAAACTGCACCACAAAATTACGGGCTTGGAGCTTTTGTTGTCATTGACAAGATCAAAACCGTCCTCGAGCAGCGGTGCCCCGGTGTCGTCTCTTGCGCCGACATTCTCAACCTCGCCACTAGGGATGCCGTTCATTTGGATGGCGCACCATCTTATCCTGTTCTGACAGGAAGAAGAGACGGTCTGACATCAACCAGGTCATCAGTGGATCTTCCCTCACCCTCCATCACATGGGAGGATGCCCTTAAATACTTCGACTCTAGAGGCTTGAATGTACTGGATATGGCAACCCTCCTAGGTGCACATTCAATGGGGAGAACACACTGTCGCTACATTCTTGATCGGCTGTACAATTTCAATGGCACAAAAAAGCCAGACCCAAGCATGGACCCTTCACTCTTAAACGATCTGAGAAGGAGCTGCCCGCCGAGAACGAAAAAGGGACAGACCGACCCTCTGGTGTACCTAAACCCGCAATTCGGTGCCGACTACAGATTCACACAAACCTACTACTCCAGAGTTCTATCGCACAAAGCCGTACTTGGAATCGATCAACAGTTACTGTACAGCAATGACACTAAGGAAATCACTCAAGAGTTTGCTGCCGGTTTTGAAGACTTTCGAAAGGCGTTCGCTATGTCTATGTACCGGATGGGAGAGTACCAGGTTTTGACAGGAAACCAGGGCGAGATACGCAAAAATTGCCGAGTTCCGAACAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

342

Amino Acids

38.5

Weight (kDa)

8.73

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	58 - 302	1.1e-70	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43480 AT5G24070
fragaria_vesca	FvH4_3g26850
malus_domestica	MD04G1046400.v1.1
prunus_persica	Prupe.1G199900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407891
rosa_laevigata	RLG00000008691
rosa_multiflora	Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352430
rosa_rugosa	Rorug04G0082000
rosa_samantha	Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana	Rw4G012080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	174, 375, 782
AccB7I	CCANNNNNTGG	1 cut(s)	531
AccI	GTMKAC	1 cut(s)	237
AciI	CCGC	3 cut(s)	373, 725, 773
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	7 cut(s)	576, 650, 764, 840, 866, 947, 962
AfiI	CCNNNNNNNGG	6 cut(s)	43, 44, 232, 531, 685, 779
AgsI	TTSAA	4 cut(s)	571, 609, 658, 914
AjnI	CCWGG	3 cut(s)	494, 963, 981
AluBI	AGCT	4 cut(s)	63, 223, 332, 720
AluI	AGCT	4 cut(s)	63, 223, 332, 720
Alw21I	GWGCWC	2 cut(s)	36, 604
Alw26I	GTCTC	2 cut(s)	394, 471
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	516
AlwNI	CAGNNNCTG	1 cut(s)	862
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	107
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	3 cut(s)	370, 720, 902
ApoI	RAATTY	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	918
AspA2I	CCTAGG	1 cut(s)	595
AspLEI	GCGC	2 cut(s)	398, 446
AspS9I	GGNCC	1 cut(s)	688
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	299, 510
AsuII	TTCGAA	1 cut(s)	922
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	688
AvrII	CCTAGG	1 cut(s)	595
BaeGI	GKGCMC	2 cut(s)	380, 604
BanI	GGYRCC	3 cut(s)	174, 375, 782
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	2 cut(s)	297, 921
Bbv12I	GWGCWC	2 cut(s)	36, 604
BbvI	GCAGC	3 cut(s)	382, 707, 889
BccI	CCATC	6 cut(s)	83, 278, 434, 457, 533, 946
BceAI	ACGGC	2 cut(s)	413, 821
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	3 cut(s)	496, 965, 983
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	394, 471
BfaI	CTAG	4 cut(s)	71, 420, 561, 596
BfmI	CTRYAG	1 cut(s)	790
BisI	GCNGC	3 cut(s)	371, 721, 903
BlnI	CCTAGG	1 cut(s)	595
BlsI	GCNGC	3 cut(s)	372, 722, 904
Bme1390I	CCNGG	4 cut(s)	381, 496, 965, 983
Bme18I	GGWCC	1 cut(s)	688
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	4 cut(s)	176, 377, 690, 784
BmrFI	CCNGG	4 cut(s)	381, 496, 965, 983
BmsI	GCATC	6 cut(s)	145, 219, 256, 278, 415, 529
BpiI	GAAGAC	2 cut(s)	297, 921
BpmI	CTGGAG	1 cut(s)	799
Bpu14I	TTCGAA	1 cut(s)	922
BpuEI	CTTGAG	1 cut(s)	876
BpuMI	CCSGG	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	849
BsaJI	CCNNGG	4 cut(s)	104, 379, 595, 982
BsaWI	WCCGGW	2 cut(s)	228, 948
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 44, 232, 531, 685, 779
Bse118I	RCCGGY	1 cut(s)	905
Bse1I	ACTGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	877
BseBI	CCWGG	3 cut(s)	496, 965, 983
BseCI	ATCGAT	1 cut(s)	849
BseDI	CCNNGG	4 cut(s)	104, 379, 595, 982
BseGI	GGATG	4 cut(s)	430, 445, 544, 957
BseLI	CCNNNNNNNGG	6 cut(s)	43, 44, 232, 531, 685, 779
BseMI	GCAATG	1 cut(s)	877
BseMII	CTCAG	3 cut(s)	255, 309, 701
BseNI	ACTGG	1 cut(s)	582
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	2 cut(s)	380, 604
BseXI	GCAGC	3 cut(s)	382, 707, 889
BsgI	GTGCAG	2 cut(s)	105, 291
BshFI	GGCC	1 cut(s)	109
BshNI	GGYRCC	3 cut(s)	174, 375, 782
BshVI	ATCGAT	1 cut(s)	849
BsiHKAI	GWGCWC	2 cut(s)	36, 604
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	5 cut(s)	172, 229, 381, 906, 949
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	6 cut(s)	43, 44, 232, 531, 685, 779
BsmAI	GTCTC	2 cut(s)	394, 471
BsmBI	CGTCTC	2 cut(s)	394, 471
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	922
Bsp1286I	GDGCHC	3 cut(s)	36, 380, 604
Bsp1407I	TGTACA	2 cut(s)	648, 864
Bsp143I	GATC	5 cut(s)	351, 508, 640, 706, 850
BspACI	CCGC	3 cut(s)	373, 725, 773
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	3 cut(s)	254, 308, 702
BspDI	ATCGAT	1 cut(s)	849
BspLI	GGNNCC	4 cut(s)	176, 377, 690, 784
BspPI	GGATC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	922
BspT107I	GGYRCC	3 cut(s)	174, 375, 782
BsrDI	GCAATG	1 cut(s)	877
BsrFI	RCCGGY	1 cut(s)	905
BsrGI	TGTACA	2 cut(s)	648, 864
BsrI	ACTGG	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	905
BssECI	CCNNGG	4 cut(s)	104, 379, 595, 982
BssMI	GATC	5 cut(s)	351, 508, 640, 706, 850
BssSI	CACGAG	1 cut(s)	29
BssT1I	CCWWGG	2 cut(s)	104, 595
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	3 cut(s)	496, 965, 983
Bst4CI	ACNGT	6 cut(s)	100, 361, 482, 626, 858, 864
Bst6I	CTCTTC	1 cut(s)	469
BstAPI	GCANNNNNTGC	1 cut(s)	1002
BstAUI	TGTACA	2 cut(s)	648, 864
BstBI	TTCGAA	1 cut(s)	922
BstC8I	GCNNGC	1 cut(s)	725
BstDEI	CTNAG	4 cut(s)	241, 295, 710, 879
BstF5I	GGATG	4 cut(s)	430, 445, 544, 957
BstHHI	GCGC	2 cut(s)	398, 446
BstKTI	GATC	5 cut(s)	354, 511, 643, 709, 853
BstMAI	GTCTC	2 cut(s)	394, 471
BstMBI	GATC	5 cut(s)	351, 508, 640, 706, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 993, 1002
BstNI	CCWGG	3 cut(s)	496, 965, 983
BstSCI	CCNGG	4 cut(s)	379, 494, 963, 981
BstSFI	CTRYAG	1 cut(s)	790
BstSLI	GKGCMC	2 cut(s)	380, 604
BstV1I	GCAGC	3 cut(s)	382, 707, 889
BstV2I	GAAGAC	2 cut(s)	297, 921
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
Bsu15I	ATCGAT	1 cut(s)	849
BsuRI	GGCC	1 cut(s)	109
BsuTUI	ATCGAT	1 cut(s)	849
BtsCI	GGATG	4 cut(s)	430, 445, 544, 957
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	4 cut(s)	63, 105, 510, 622
Cac8I	GCNNGC	1 cut(s)	725
CaiI	CAGNNNCTG	1 cut(s)	862
CfoI	GCGC	2 cut(s)	398, 446
Cfr10I	RCCGGY	1 cut(s)	905
Cfr13I	GGNCC	1 cut(s)	688
ClaI	ATCGAT	1 cut(s)	849
CsiI	ACCWGGT	2 cut(s)	494, 963
Csp6I	GTAC	7 cut(s)	575, 649, 763, 839, 865, 946, 961
CviAII	CATG	2 cut(s)	531, 685
CviQI	GTAC	7 cut(s)	575, 649, 763, 839, 865, 946, 961
DdeI	CTNAG	4 cut(s)	241, 295, 710, 879
DpnI	GATC	5 cut(s)	353, 510, 642, 708, 852
DpnII	GATC	5 cut(s)	351, 508, 640, 706, 850
DraIII	CACNNNGTG	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Eco130I	CCWWGG	2 cut(s)	104, 595
Eco47I	GGWCC	1 cut(s)	688
Eco88I	CYCGRG	1 cut(s)	365
EcoRII	CCWGG	3 cut(s)	494, 963, 981
EcoT14I	CCWWGG	2 cut(s)	104, 595
EcoT22I	ATGCAT	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	104, 595
Esp3I	CGTCTC	2 cut(s)	394, 471
FaeI	CATG	2 cut(s)	534, 688
FaiI	YATR	6 cut(s)	168, 532, 584, 686, 938, 944
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	2 cut(s)	530, 684
FauI	CCCGC	2 cut(s)	732, 780
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	3 cut(s)	371, 721, 903
FokI	GGATG	4 cut(s)	437, 452, 551, 964
Fsp4HI	GCNGC	3 cut(s)	371, 721, 903
FspBI	CTAG	4 cut(s)	71, 420, 561, 596
GlaI	GCGC	2 cut(s)	397, 445
GluI	GCNGC	3 cut(s)	371, 721, 903
GsuI	CTGGAG	1 cut(s)	799
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	5 cut(s)	172, 229, 381, 906, 949
HhaI	GCGC	2 cut(s)	398, 446
Hin1II	CATG	2 cut(s)	534, 688
Hin6I	GCGC	2 cut(s)	396, 444
HinP1I	GCGC	2 cut(s)	396, 444
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	4 cut(s)	293, 557, 795, 846
HpaII	CCGG	5 cut(s)	172, 229, 381, 906, 949
HphI	GGTGA	2 cut(s)	299, 510
Hpy166II	GTNNAC	4 cut(s)	117, 238, 602, 763
Hpy188I	TCNGA	6 cut(s)	244, 298, 465, 486, 711, 1014
Hpy188III	TCNNGA	4 cut(s)	561, 638, 816, 893
Hpy8I	GTNNAC	4 cut(s)	117, 238, 602, 763
HpyAV	CCTTC	2 cut(s)	702, 708
HpyCH4III	ACNGT	6 cut(s)	100, 361, 482, 626, 858, 864
HpyCH4V	TGCA	6 cut(s)	56, 86, 158, 269, 308, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 993, 1002
HpyF3I	CTNAG	4 cut(s)	241, 295, 710, 879
Hsp92II	CATG	2 cut(s)	534, 688
HspAI	GCGC	2 cut(s)	396, 444
Kzo9I	GATC	5 cut(s)	351, 508, 640, 706, 850
LmnI	GCTCC	4 cut(s)	39, 228, 329, 717
Lsp1109I	GCAGC	3 cut(s)	382, 707, 889
LweI	GCATC	6 cut(s)	145, 219, 256, 278, 415, 529
MabI	ACCWGGT	2 cut(s)	494, 963
MaeI	CTAG	4 cut(s)	71, 420, 561, 596
MaeIII	GTNAC	2 cut(s)	253, 858
MalI	GATC	5 cut(s)	353, 510, 642, 708, 852
MboI	GATC	5 cut(s)	351, 508, 640, 706, 850
MboII	GAAGA	5 cut(s)	302, 483, 486, 503, 926
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	3 cut(s)	36, 380, 604
MluCI	AATT	5 cut(s)	135, 316, 652, 776, 1000
MlyI	GAGTC	2 cut(s)	287, 551
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	918
MseI	TTAA	2 cut(s)	546, 701
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	5 cut(s)	172, 229, 381, 906, 949
MspR9I	CCNGG	4 cut(s)	381, 496, 965, 983
MvaI	CCWGG	3 cut(s)	496, 965, 983
MwoI	GCNNNNNNNGC	3 cut(s)	31, 993, 1002
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	5 cut(s)	351, 508, 640, 706, 850
NlaIII	CATG	2 cut(s)	534, 688
NlaIV	GGNNCC	4 cut(s)	176, 377, 690, 784
NmeAIII	GCCGAG	1 cut(s)	753
NsiI	ATGCAT	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	922
PaeR7I	CTCGAG	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	2 cut(s)	795, 846
PflMI	CCANNNNNTGG	1 cut(s)	531
PkrI	GCNGC	3 cut(s)	372, 722, 904
PleI	GAGTC	2 cut(s)	287, 551
PpsI	GAGTC	2 cut(s)	287, 551
Psp6I	CCWGG	3 cut(s)	494, 963, 981
PspGI	CCWGG	3 cut(s)	494, 963, 981
PspN4I	GGNNCC	4 cut(s)	176, 377, 690, 784
PspPI	GGNCC	1 cut(s)	688
PspXI	VCTCGAGB	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	862
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	7 cut(s)	576, 650, 764, 840, 866, 947, 962
RsaNI	GTAC	7 cut(s)	575, 649, 763, 839, 865, 946, 961
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	546, 701
SatI	GCNGC	3 cut(s)	371, 721, 903
Sau3AI	GATC	5 cut(s)	351, 508, 640, 706, 850
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	2 cut(s)	287, 551
ScrFI	CCNGG	4 cut(s)	381, 496, 965, 983
SduI	GDGCHC	3 cut(s)	36, 380, 604
SexAI	ACCWGGT	2 cut(s)	494, 963
SfaNI	GCATC	6 cut(s)	145, 219, 256, 278, 415, 529
SfcI	CTRYAG	1 cut(s)	790
Sfr274I	CTCGAG	1 cut(s)	365
SfuI	TTCGAA	1 cut(s)	922
SinI	GGWCC	1 cut(s)	688
SlaI	CTCGAG	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	2 cut(s)	365, 891
SmoI	CTYRAG	2 cut(s)	365, 891
Sse9I	AATT	5 cut(s)	135, 316, 652, 776, 1000
SsiI	CCGC	3 cut(s)	373, 725, 773
SspMI	CTAG	4 cut(s)	71, 420, 561, 596
StyD4I	CCNGG	4 cut(s)	379, 494, 963, 981
StyI	CCWWGG	2 cut(s)	104, 595
TaaI	ACNGT	6 cut(s)	100, 361, 482, 626, 858, 864
TaqI	TCGA	5 cut(s)	95, 366, 555, 849, 922
TaqII	GACCGA	1 cut(s)	764
TasI	AATT	5 cut(s)	135, 316, 652, 776, 1000
TatI	WGTACW	3 cut(s)	574, 648, 864
TfiI	GAWTC	2 cut(s)	795, 846
Tru1I	TTAA	2 cut(s)	546, 701
Tru9I	TTAA	2 cut(s)	546, 701
TscAI	CASTG	4 cut(s)	63, 105, 510, 629
TseI	GCWGC	3 cut(s)	370, 720, 902
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	4 cut(s)	63, 105, 510, 629
Van91I	CCANNNNNTGG	1 cut(s)	531
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XhoI	CTCGAG	1 cut(s)	365
XmaJI	CCTAGG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	4 cut(s)	71, 420, 561, 596
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.