Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029075.1

Orthogroup ID

OG0015393

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 856

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029075.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 554 bp

gccgaagggacggcctaacatcaagcagatcatcagtcgaccttccctcaccctccatttcatggcaggcttcacttgactacttcaaatccagaggcttgaatgttttggatatgactactctactaggttcacattcaatgggtaaaacacattgtcgcttcattttggatcggctctacaattttaatggcacaaacaagccagacccaagcatggaaccctcattcttatcctccatgagaaagttatgcccaccaagaactacaaaggggcagagtgacccgctggtgtacctaaacccccaatctggggccaattacaattttacacaatcctactactccagagttttatccaagaaagctgtgctgggagtcgaccagcagctactgtttggtgaagacaccaaggatatcaccgatgagtttgctgctggttttgaagattttcggaggtcatatgcttactcaatgagcagaatgggtgctatcaaggttttgacaggtaaccagggagagatacgccggaattgccgagttccaaaccactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

183

Amino Acids

20.62

Weight (kDa)

9.45

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43480 AT5G24070
fragaria_vesca	FvH4_3g26850
malus_domestica	MD04G1046400.v1.1
prunus_persica	Prupe.1G199900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407891
rosa_laevigata	RLG00000008691
rosa_multiflora	Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352430
rosa_rugosa	Rorug04G0082000
rosa_samantha	Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana	Rw4G012080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccI	GTMKAC	2 cut(s)	38, 380
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	179
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	5 cut(s)	62, 216, 310, 311, 312
AgsI	TTSAA	4 cut(s)	87, 102, 140, 445
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	2 cut(s)	367, 390
AluI	AGCT	2 cut(s)	367, 390
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	393
AoxI	GGCC	2 cut(s)	12, 314
ApeKI	GCWGC	2 cut(s)	387, 433
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	41, 411, 412
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	399, 420
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BciT130I	CCWGG	1 cut(s)	514
BfaI	CTAG	1 cut(s)	127
BisI	GCNGC	2 cut(s)	388, 434
BlsI	GCNGC	2 cut(s)	389, 435
Bme1390I	CCNGG	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	221, 315
BmrFI	CCNGG	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	410, 513
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 216, 310, 311, 312
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	410, 513
BseLI	CCNNNNNNNGG	5 cut(s)	62, 216, 310, 311, 312
BseXI	GCAGC	2 cut(s)	399, 420
BseYI	CCCAGC	1 cut(s)	372
BshFI	GGCC	2 cut(s)	14, 316
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	5 cut(s)	62, 216, 310, 311, 312
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	14, 316
Bsp143I	GATC	2 cut(s)	28, 171
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	14, 316
BspLI	GGNNCC	2 cut(s)	221, 315
BspPI	GGATC	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	410, 513
BssMI	GATC	2 cut(s)	28, 171
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	508
BstKTI	GATC	2 cut(s)	31, 174
BstMBI	GATC	2 cut(s)	28, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	1 cut(s)	514
BstPI	GGTNACC	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	399, 420
BstV2I	GAAGAC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	14, 316
Cac8I	GCNNGC	1 cut(s)	68
CaiI	CAGNNNCTG	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	3 cut(s)	62, 216, 240
CviJI	RGCY	8 cut(s)	14, 70, 98, 177, 204, 316, 367, 390
CviKI_1	RGCY	8 cut(s)	14, 70, 98, 177, 204, 316, 367, 390
CviQI	GTAC	1 cut(s)	294
DpnI	GATC	2 cut(s)	30, 173
DpnII	GATC	2 cut(s)	28, 171
Eco130I	CCWWGG	1 cut(s)	410
Eco32I	GATATC	1 cut(s)	417
Eco91I	GGTNACC	1 cut(s)	508
EcoO65I	GGTNACC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	512
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	3 cut(s)	65, 219, 243
FaiI	YATR	7 cut(s)	63, 115, 217, 241, 252, 462, 464
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	61, 215, 239
FauI	CCCGC	1 cut(s)	293
FauNDI	CATATG	1 cut(s)	462
FblI	GTMKAC	2 cut(s)	38, 380
Fnu4HI	GCNGC	2 cut(s)	388, 434
Fsp4HI	GCNGC	2 cut(s)	388, 434
FspBI	CTAG	1 cut(s)	127
GluI	GCNGC	2 cut(s)	388, 434
GsaI	CCCAGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	14, 316
HapII	CCGG	1 cut(s)	528
Hin1II	CATG	3 cut(s)	65, 219, 243
HincII	GTYRAC	2 cut(s)	39, 381
HindII	GTYRAC	2 cut(s)	39, 381
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	3 cut(s)	41, 411, 412
Hpy166II	GTNNAC	4 cut(s)	39, 133, 294, 381
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	2 cut(s)	92, 347
Hpy8I	GTNNAC	4 cut(s)	39, 133, 294, 381
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
Hsp92II	CATG	3 cut(s)	65, 219, 243
Kzo9I	GATC	2 cut(s)	28, 171
Lsp1109I	GCAGC	2 cut(s)	399, 420
MaeI	CTAG	1 cut(s)	127
MaeIII	GTNAC	2 cut(s)	280, 508
MalI	GATC	2 cut(s)	30, 173
MboI	GATC	2 cut(s)	28, 171
MboII	GAAGA	2 cut(s)	415, 457
MluCI	AATT	4 cut(s)	183, 318, 324, 531
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	6 cut(s)	57, 63, 88, 234, 246, 449
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	533
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	2 cut(s)	28, 171
NlaIII	CATG	3 cut(s)	65, 219, 243
NlaIV	GGNNCC	2 cut(s)	221, 315
NmuCI	GTSAC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	389, 435
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	512
PspEI	GGTNACC	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	221, 315
PspPI	GGNCC	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	393
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SalI	GTCGAC	2 cut(s)	37, 379
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	388, 434
Sau3AI	GATC	2 cut(s)	28, 171
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	514
SetI	ASST	8 cut(s)	44, 132, 299, 369, 392, 460, 500, 510
Sse9I	AATT	4 cut(s)	183, 318, 324, 531
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	395
TaqI	TCGA	2 cut(s)	38, 380
TasI	AATT	4 cut(s)	183, 318, 324, 531
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	2 cut(s)	387, 433
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	50, 153
Van91I	CCANNNNNTGG	1 cut(s)	62
XmiI	GTMKAC	2 cut(s)	38, 380
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.