FvH4_3g26850

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015393
Physical Location & Seq
Forward (+)
19989352 .. 19991681
2330 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26850.t1

Sequence Viewer

Length: 1020 bp
ATGACAAGAAACCAGAGAATATTTGTGTTTCTTGTGGTCCTTCCACTTCTAGTGTCTGTGTGCTCGTCGGCGACGCCAAAAGCACCACCACCACCACCAAAGCAAAATCAGTTGATGTGGCATTTCTACAAAGTCACTAACACATGCCGCGACGCAGAACTTTACATTCGCCACCAAGTCGAGTTGCTTTGGCACCAAGATAAAAGCATCACCCCTAAGCTTCTCCGGTTACTCTACTCCGATTGCTTCGTAACTGGTTGTGATGCATCAGTGCTGCTGGATGGTCCAAACTCTGAGAAAACTGCACCACAGAATTTGGGATTGGGAGGTTTCGTTTTCATTGACAGGATCAAACGGGTTCTTGAACAACGCTGCCCCGGTGCCGTCTCGTGTGCTGACCTTCTCAACCTCGCCACCAGGGATGCTGTTCATTTGGCAGGTGCACCATCTTATCCTGTTCTTACAGGCCGAAGGGACGGGCTAAAATCAAGCAGATCATCAGTCGACCTTCCCTCACCCTCCATTTCATGGCAGGCTTCACTTGACTACTTCAAATCCAGAGGCTTGAATGTGTTGGATATGACTACCCTACTAGGTTCACATTCAATGGGTAAAACACATTGTCGTTTCATTTTGGATCGGCTCTACAATTTTAATGGCACAAACAAGCCAGACCCAAACATGGGTCCCTCATTCTTATCCTCCATGAGGAAGCTATGTCCACCAAGAACAAAAAAGGGACAGAGTGACCCGCTGGTGTACCTAAACCCCCAATCTGGGCCCAGTTACAGTTTCACAAACTCCTACTACTCCAGAGTTCTATCCAAGAAATCTGTGCTGGGAATCGATCAGCAGCTATTGTTAGGTGAAGACACAAAGGATATCACCGATGAGTTTGATGCTGGTTTAGAAGATTTTCGGAGGTCATATGCATACTCAATGAGCAGAATGGGCTCTATTAAGGTTCTGACAGGTAAGCAGGGAGAGATCCGCCGTAATTGCCGAGTTCGAAACCACTAA

Protein Analysis

340

Amino Acids

37.98

Weight (kDa)

9.48

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 57 - 299 7.7e-71 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43480 AT5G24070
fragaria_vesca FvH4_3g26850
malus_domestica MD04G1046400.v1.1
prunus_persica Prupe.1G199900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407891
rosa_laevigata RLG00000008691
rosa_multiflora Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii Rroxscaffold_5G00352430
rosa_rugosa Rorug04G0082000
rosa_samantha Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana Rw4G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 428
AccB1I GGYRCC 2 cut(s) 192, 380
AccB7I CCANNNNNTGG 1 cut(s) 528
AccI GTMKAC 1 cut(s) 504
AccII CGCG 1 cut(s) 150
AciI CCGC 3 cut(s) 148, 752, 991
AclWI GGATC 3 cut(s) 356, 645, 982
AcsI RAATTY 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 1 cut(s) 761
AfiI CCNNNNNNNGG 6 cut(s) 528, 682, 683, 708, 776, 777
AgsI TTSAA 4 cut(s) 365, 553, 568, 606
AjnI CCWGG 1 cut(s) 416
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 3 cut(s) 220, 715, 856
AluI AGCT 3 cut(s) 220, 715, 856
Alw21I GWGCWC 2 cut(s) 65, 445
Alw26I GTCTC 1 cut(s) 391
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 3 cut(s) 356, 645, 982
AoxI GGCC 2 cut(s) 466, 779
ApaI GGGCCC 1 cut(s) 783
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 3 cut(s) 274, 372, 853
ApoI RAATTY 1 cut(s) 313
Asp700I GAANNNNTTC 1 cut(s) 915
AspS9I GGNCC 5 cut(s) 37, 284, 686, 779, 780
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 4 cut(s) 202, 507, 877, 878
AsuII TTCGAA 1 cut(s) 1009
AvaII GGWCC 3 cut(s) 37, 284, 686
BaeGI GKGCMC 2 cut(s) 445, 783
BanI GGYRCC 2 cut(s) 192, 380
BanII GRGCYC 2 cut(s) 783, 956
BauI CACGAG 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 2 cut(s) 65, 445
BbvI GCAGC 3 cut(s) 261, 359, 865
BccI CCATC 2 cut(s) 275, 454
BceAI ACGGC 2 cut(s) 368, 978
BciT130I CCWGG 1 cut(s) 418
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 2 cut(s) 50, 593
BfuAI ACCTGC 1 cut(s) 428
BisI GCNGC 4 cut(s) 148, 275, 373, 854
BlsI GCNGC 4 cut(s) 149, 276, 374, 855
Bme1390I CCNGG 2 cut(s) 378, 418
Bme18I GGWCC 3 cut(s) 37, 284, 686
BmgT120I GGNCC 5 cut(s) 37, 284, 686, 779, 780
BmiI GGNNCC 5 cut(s) 194, 382, 687, 688, 781
BmrFI CCNGG 2 cut(s) 378, 418
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 5 cut(s) 216, 253, 275, 412, 889
BmuI ACTGGG 1 cut(s) 777
BpiI GAAGAC 1 cut(s) 876
BpmI CTGGAG 1 cut(s) 796
Bpu10I CCTNAGC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 1009
BpuMI CCSGG 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 846
BsaHI GRCGYC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 376, 417
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 6 cut(s) 528, 682, 683, 708, 776, 777
Bse1I ACTGG 2 cut(s) 259, 783
BseBI CCWGG 1 cut(s) 418
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 2 cut(s) 376, 417
BseGI GGATG 2 cut(s) 286, 427
BseLI CCNNNNNNNGG 6 cut(s) 528, 682, 683, 708, 776, 777
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 259, 783
BseSI GKGCMC 2 cut(s) 445, 783
BseXI GCAGC 3 cut(s) 261, 359, 865
BseYI CCCAGC 1 cut(s) 838
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 468, 781
BshNI GGYRCC 2 cut(s) 192, 380
BshVI ATCGAT 1 cut(s) 846
BsiHKAI GWGCWC 2 cut(s) 65, 445
BsiSI CCGG 2 cut(s) 226, 378
BslFI GGGAC 3 cut(s) 488, 672, 753
BslI CCNNNNNNNGG 6 cut(s) 528, 682, 683, 708, 776, 777
BsmAI GTCTC 1 cut(s) 391
BsmBI CGTCTC 1 cut(s) 391
BsmFI GGGAC 3 cut(s) 488, 672, 753
BsnI GGCC 2 cut(s) 468, 781
Bsp119I TTCGAA 1 cut(s) 1009
Bsp120I GGGCCC 1 cut(s) 779
Bsp1286I GDGCHC 4 cut(s) 65, 445, 783, 956
Bsp143I GATC 5 cut(s) 348, 494, 637, 847, 987
BspACI CCGC 3 cut(s) 148, 752, 991
BspANI GGCC 2 cut(s) 468, 781
BspCNI CTCAG 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 846
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 5 cut(s) 194, 382, 687, 688, 781
BspMI ACCTGC 1 cut(s) 428
BspPI GGATC 3 cut(s) 356, 645, 982
BspT104I TTCGAA 1 cut(s) 1009
BspT107I GGYRCC 2 cut(s) 192, 380
BsrI ACTGG 2 cut(s) 259, 783
BssECI CCNNGG 2 cut(s) 376, 417
BssMI GATC 5 cut(s) 348, 494, 637, 847, 987
BssNI GRCGYC 1 cut(s) 74
BssSI CACGAG 1 cut(s) 388
Bst2BI CACGAG 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 1 cut(s) 791
BstACI GRCGYC 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 1009
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 2 cut(s) 216, 294
BstENI CCTNNNNNAGG 1 cut(s) 706
BstF5I GGATG 2 cut(s) 286, 427
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 5 cut(s) 351, 497, 640, 850, 990
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 5 cut(s) 348, 494, 637, 847, 987
BstMWI GCNNNNNNNGC 2 cut(s) 951, 999
BstNI CCWGG 1 cut(s) 418
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 376, 416
BstSLI GKGCMC 2 cut(s) 445, 783
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 261, 359, 865
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 1 cut(s) 987
BstYI RGATCY 1 cut(s) 987
Bsu15I ATCGAT 1 cut(s) 846
BsuRI GGCC 2 cut(s) 468, 781
BsuTUI ATCGAT 1 cut(s) 846
BtsCI GGATG 2 cut(s) 286, 427
BtsIMutI CAGTG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 534
Cfr13I GGNCC 5 cut(s) 37, 284, 686, 779, 780
ClaI ATCGAT 1 cut(s) 846
CseI GACGC 2 cut(s) 82, 161
Csp6I GTAC 1 cut(s) 760
CspCI CAANNNNNGTGG 2 cut(s) 297, 332
CviAII CATG 4 cut(s) 144, 528, 682, 706
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 2 cut(s) 216, 294
DpnI GATC 5 cut(s) 350, 496, 639, 849, 989
DpnII GATC 5 cut(s) 348, 494, 637, 847, 987
EciI GGCGGA 1 cut(s) 980
Eco24I GRGCYC 2 cut(s) 783, 956
Eco32I GATATC 1 cut(s) 883
Eco47I GGWCC 3 cut(s) 37, 284, 686
EcoNI CCTNNNNNAGG 1 cut(s) 706
EcoO109I RGGNCCY 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 416
EcoRV GATATC 1 cut(s) 883
EcoT22I ATGCAT 2 cut(s) 268, 934
EcoT38I GRGCYC 2 cut(s) 783, 956
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 4 cut(s) 147, 531, 685, 709
FaiI YATR 9 cut(s) 145, 529, 581, 683, 707, 718, 928, 930, 934
FaqI GGGAC 3 cut(s) 488, 672, 753
FatI CATG 4 cut(s) 143, 527, 681, 705
FauI CCCGC 1 cut(s) 759
FauNDI CATATG 1 cut(s) 928
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 4 cut(s) 148, 275, 373, 854
FokI GGATG 2 cut(s) 293, 434
FriOI GRGCYC 2 cut(s) 783, 956
Fsp4HI GCNGC 4 cut(s) 148, 275, 373, 854
FspBI CTAG 2 cut(s) 50, 593
GluI GCNGC 4 cut(s) 148, 275, 373, 854
GsaI CCCAGC 1 cut(s) 842
GsuI CTGGAG 1 cut(s) 796
HaeIII GGCC 2 cut(s) 468, 781
HapII CCGG 2 cut(s) 226, 378
HgaI GACGC 2 cut(s) 82, 161
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 4 cut(s) 147, 531, 685, 709
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 843
HpaII CCGG 2 cut(s) 226, 378
HphI GGTGA 4 cut(s) 202, 507, 877, 878
Hpy166II GTNNAC 5 cut(s) 443, 505, 599, 722, 760
Hpy188I TCNGA 4 cut(s) 241, 295, 921, 969
Hpy188III TCNNGA 3 cut(s) 362, 558, 813
Hpy8I GTNNAC 5 cut(s) 443, 505, 599, 722, 760
Hpy99I CGWCG 3 cut(s) 70, 76, 155
HpyAV CCTTC 4 cut(s) 50, 410, 465, 518
HpyCH4III ACNGT 1 cut(s) 791
HpyCH4V TGCA 4 cut(s) 266, 305, 443, 932
HpyF10VI GCNNNNNNNGC 2 cut(s) 951, 999
HpyF3I CTNAG 2 cut(s) 216, 294
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 4 cut(s) 147, 531, 685, 709
KflI GGGWCCC 1 cut(s) 686
Kzo9I GATC 5 cut(s) 348, 494, 637, 847, 987
Lsp1109I GCAGC 3 cut(s) 261, 359, 865
LweI GCATC 5 cut(s) 216, 253, 275, 412, 889
MaeI CTAG 2 cut(s) 50, 593
MaeIII GTNAC 5 cut(s) 133, 228, 250, 746, 785
MalI GATC 5 cut(s) 350, 496, 639, 849, 989
MboI GATC 5 cut(s) 348, 494, 637, 847, 987
MboII GAAGA 2 cut(s) 881, 923
MflI RGATCY 1 cut(s) 987
MhlI GDGCHC 4 cut(s) 65, 445, 783, 956
MluCI AATT 3 cut(s) 313, 649, 997
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 9 cut(s) 320, 419, 523, 529, 554, 700, 702, 712, 915
Mph1103I ATGCAT 2 cut(s) 268, 934
MroXI GAANNNNTTC 1 cut(s) 915
MseI TTAA 2 cut(s) 654, 960
MspA1I CMGCKG 1 cut(s) 754
MspI CCGG 2 cut(s) 226, 378
MspR9I CCNGG 2 cut(s) 378, 418
MvaI CCWGG 1 cut(s) 418
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 951, 999
NciI CCSGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 928
NdeII GATC 5 cut(s) 348, 494, 637, 847, 987
NlaIII CATG 4 cut(s) 147, 531, 685, 709
NlaIV GGNNCC 5 cut(s) 194, 382, 687, 688, 781
NmuCI GTSAC 2 cut(s) 133, 746
NsiI ATGCAT 2 cut(s) 268, 934
NspI RCATGY 1 cut(s) 147
NspV TTCGAA 1 cut(s) 1009
PaqCI CACCTGC 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 915
PfeI GAWTC 1 cut(s) 843
PflMI CCANNNNNTGG 1 cut(s) 528
PkrI GCNGC 4 cut(s) 149, 276, 374, 855
PpuMI RGGWCCY 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 416
PspFI CCCAGC 1 cut(s) 838
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 5 cut(s) 194, 382, 687, 688, 781
PspOMI GGGCCC 1 cut(s) 779
PspPI GGNCC 5 cut(s) 37, 284, 686, 779, 780
PspPPI RGGWCCY 1 cut(s) 686
PsuI RGATCY 1 cut(s) 987
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
SalI GTCGAC 1 cut(s) 503
SaqAI TTAA 2 cut(s) 654, 960
SatI GCNGC 4 cut(s) 148, 275, 373, 854
Sau3AI GATC 5 cut(s) 348, 494, 637, 847, 987
Sau96I GGNCC 5 cut(s) 37, 284, 686, 779, 780
ScrFI CCNGG 2 cut(s) 378, 418
SduI GDGCHC 4 cut(s) 65, 445, 783, 956
SfaNI GCATC 5 cut(s) 216, 253, 275, 412, 889
SfuI TTCGAA 1 cut(s) 1009
SinI GGWCC 3 cut(s) 37, 284, 686
Sse9I AATT 3 cut(s) 313, 649, 997
SsiI CCGC 3 cut(s) 148, 752, 991
SspI AATATT 1 cut(s) 21
SspMI CTAG 2 cut(s) 50, 593
StyD4I CCNGG 2 cut(s) 376, 416
TaaI ACNGT 1 cut(s) 791
TaqI TCGA 4 cut(s) 180, 504, 846, 1009
TasI AATT 3 cut(s) 313, 649, 997
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 843
Tru1I TTAA 2 cut(s) 654, 960
Tru9I TTAA 2 cut(s) 654, 960
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 2 cut(s) 133, 746
TseI GCWGC 3 cut(s) 274, 372, 853
Tsp45I GTSAC 2 cut(s) 133, 746
TspDTI ATGAA 4 cut(s) 328, 419, 516, 619
TspRI CASTG 1 cut(s) 276
Van91I CCANNNNNTGG 1 cut(s) 528
VneI GTGCAC 1 cut(s) 441
VpaK11BI GGWCC 3 cut(s) 37, 284, 686
XagI CCTNNNNNAGG 1 cut(s) 706
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 915
XspI CTAG 2 cut(s) 50, 593
Zsp2I ATGCAT 2 cut(s) 268, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.