Rh4CG153900

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015393
Physical Location & Seq
Reverse (-)
33826594 .. 33828633
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG153900.1

Sequence Viewer

Length: 1035 bp
ATGACAAGAAACGAAAGAATATTTGTGTTTCTTGTGGTCCTTCCACTTCTAGTGTCTCTGTGTTCGTCGGCGACCTTGGCTCCTTCTTCAAAACCACCACCACCACCACCACCAAAGCAAAACAAGTTGACCTGGCATTACTATAAAGTCACTAACACATGCCGCGATGCAGAAGCTTTCATCCAGCACCAGGTCAAGAAGTTTTGGGACCAGGATAAAAGCATCACCGCTAAGCTTCTCCGGTTGCTCTACTCTGACTGCTTCGTAACTGGTTGTGATGCATCAGTACTGCTGGATGGTCCAAACTCTGAGAAAACTGCACCACAGAATTGGGGACTGGGAGGTTTCTATTTCATCGACAACGTCAAAAAAGTTCTGGAACATTACTGCCCCGGTGCCGTCTCGTGTGCTGATATTCTCAACCTTGCCACCAGGGATGCTGTTCATTTGGCTGGTGCACCGTCTTATCCTGTTCTTACAGGCCGAAGGGACGGCCTAACATCAAGCAGATCATCAGTCGACCTTCCCTCACCCTCCATTTCATGGCAGGCTTCACTTGACTACTTCAAATCCAGAGGCTTGAATGTATTGGATATGACTACTCTACTAGGTTCACATTCAATGGGTAAAACACATTGTCGCTTCATTTTGGATCGGCTCTACAATTTTAATGGCACAAACAAGCCAGACCCAAGCATGGAACCCTCATTCTTATCCTCCATGAGAAAGTTATGCCCACCAAGAACTACAAAGGGACAGAGTGACCCGCTGGTGTACCTAAACCCCCAATCTGGGGCCAATTACAATTTTACACAATCCTACTACTCCAGAGTTTTATCCAAGAAAGCTGTGCTGGGAGTCGACCAGCAGCTACTGTTTGGTGAAGACACCAAGGATATCACCTATGAGTTTGCTGCTGGTTTTGAAGATTTTCGGAGGTCATATGCTTACTCAATGAGCAGAATGGGTGCTATCAAGGTTTTGACAGGTAACCAGGGAGAGATACGCCGGAATTGCCGAGTTCCAAACCACTAA

Protein Analysis

344

Amino Acids

38.43

Weight (kDa)

9.18

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 62 - 306 4.8e-70 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43480 AT5G24070
fragaria_vesca FvH4_3g26850
malus_domestica MD04G1046400.v1.1
prunus_persica Prupe.1G199900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407891
rosa_laevigata RLG00000008691
rosa_multiflora Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii Rroxscaffold_5G00352430
rosa_rugosa Rorug04G0082000
rosa_samantha Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana Rw4G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 543
AccI GTMKAC 2 cut(s) 519, 861
AccII CGCG 1 cut(s) 165
AciI CCGC 3 cut(s) 163, 228, 767
AclWI GGATC 1 cut(s) 660
AfaI GTAC 2 cut(s) 288, 776
AfiI CCNNNNNNNGG 6 cut(s) 190, 543, 697, 791, 792, 793
AgsI TTSAA 5 cut(s) 90, 568, 583, 621, 926
AjnI CCWGG 5 cut(s) 131, 189, 210, 431, 993
AluBI AGCT 4 cut(s) 176, 235, 848, 871
AluI AGCT 4 cut(s) 176, 235, 848, 871
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 2 cut(s) 60, 406
Alw44I GTGCAC 1 cut(s) 456
AlwI GGATC 1 cut(s) 660
AlwNI CAGNNNCTG 1 cut(s) 874
AoxI GGCC 3 cut(s) 481, 493, 795
ApaLI GTGCAC 1 cut(s) 456
ApeKI GCWGC 2 cut(s) 868, 914
Asp700I GAANNNNTTC 1 cut(s) 930
AspS9I GGNCC 4 cut(s) 37, 208, 299, 795
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 4 cut(s) 217, 522, 892, 893
AvaII GGWCC 3 cut(s) 37, 208, 299
BaeGI GKGCMC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 395
BauI CACGAG 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 891
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 880, 901
BccI CCATC 1 cut(s) 290
BceAI ACGGC 2 cut(s) 383, 508
BciT130I CCWGG 5 cut(s) 133, 191, 212, 433, 995
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 60, 406
BfaI CTAG 2 cut(s) 50, 608
BisI GCNGC 3 cut(s) 163, 869, 915
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 3 cut(s) 164, 870, 916
BmcAI AGTACT 1 cut(s) 288
Bme1390I CCNGG 6 cut(s) 133, 191, 212, 393, 433, 995
Bme18I GGWCC 3 cut(s) 37, 208, 299
BmgT120I GGNCC 4 cut(s) 37, 208, 299, 795
BmiI GGNNCC 5 cut(s) 81, 209, 397, 702, 796
BmrFI CCNGG 6 cut(s) 133, 191, 212, 393, 433, 995
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 5 cut(s) 157, 231, 268, 290, 427
BmuI ACTGGG 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 891
BpmI CTGGAG 1 cut(s) 811
Bpu1102I GCTNAGC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 393
BsaJI CCNNGG 5 cut(s) 75, 391, 432, 891, 994
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 6 cut(s) 190, 543, 697, 791, 792, 793
Bse1I ACTGG 2 cut(s) 274, 342
BseBI CCWGG 5 cut(s) 133, 191, 212, 433, 995
BseDI CCNNGG 5 cut(s) 75, 391, 432, 891, 994
BseGI GGATG 3 cut(s) 180, 301, 442
BseLI CCNNNNNNNGG 6 cut(s) 190, 543, 697, 791, 792, 793
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 2 cut(s) 274, 342
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 2 cut(s) 880, 901
BseYI CCCAGC 1 cut(s) 853
BsgI GTGCAG 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 3 cut(s) 483, 495, 797
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 460
BsiSI CCGG 3 cut(s) 241, 393, 1009
BslFI GGGAC 4 cut(s) 221, 348, 503, 768
BslI CCNNNNNNNGG 6 cut(s) 190, 543, 697, 791, 792, 793
BsmAI GTCTC 2 cut(s) 60, 406
BsmBI CGTCTC 1 cut(s) 406
BsmFI GGGAC 4 cut(s) 221, 348, 503, 768
BsnI GGCC 3 cut(s) 483, 495, 797
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 2 cut(s) 509, 652
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 3 cut(s) 163, 228, 767
BspANI GGCC 3 cut(s) 483, 495, 797
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 5 cut(s) 81, 209, 397, 702, 796
BspPI GGATC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 395
BsrI ACTGG 2 cut(s) 274, 342
BssECI CCNNGG 5 cut(s) 75, 391, 432, 891, 994
BssMI GATC 2 cut(s) 509, 652
BssSI CACGAG 1 cut(s) 403
BssT1I CCWWGG 2 cut(s) 75, 891
Bst2BI CACGAG 1 cut(s) 403
Bst2UI CCWGG 5 cut(s) 133, 191, 212, 433, 995
Bst4CI ACNGT 2 cut(s) 462, 876
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 2 cut(s) 231, 309
BstEII GGTNACC 1 cut(s) 989
BstF5I GGATG 3 cut(s) 180, 301, 442
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 2 cut(s) 512, 655
BstMAI GTCTC 2 cut(s) 60, 406
BstMBI GATC 2 cut(s) 509, 652
BstMWI GCNNNNNNNGC 2 cut(s) 77, 1014
BstNI CCWGG 5 cut(s) 133, 191, 212, 433, 995
BstNSI RCATGY 1 cut(s) 162
BstPI GGTNACC 1 cut(s) 989
BstSCI CCNGG 6 cut(s) 131, 189, 210, 391, 431, 993
BstSLI GKGCMC 1 cut(s) 460
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 880, 901
BstV2I GAAGAC 1 cut(s) 891
BstXI CCANNNNNNTGG 1 cut(s) 330
BsuRI GGCC 3 cut(s) 483, 495, 797
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 3 cut(s) 180, 301, 442
Cac8I GCNNGC 1 cut(s) 549
CaiI CAGNNNCTG 1 cut(s) 874
Cfr13I GGNCC 4 cut(s) 37, 208, 299, 795
CsiI ACCWGGT 1 cut(s) 189
Csp6I GTAC 2 cut(s) 287, 775
CviAII CATG 4 cut(s) 159, 543, 697, 721
CviQI GTAC 2 cut(s) 287, 775
DdeI CTNAG 2 cut(s) 231, 309
DpnI GATC 2 cut(s) 511, 654
DpnII GATC 2 cut(s) 509, 652
Eco130I CCWWGG 2 cut(s) 75, 891
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 3 cut(s) 37, 208, 299
Eco91I GGTNACC 1 cut(s) 989
EcoO65I GGTNACC 1 cut(s) 989
EcoRII CCWGG 5 cut(s) 131, 189, 210, 431, 993
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 2 cut(s) 75, 891
EcoT22I ATGCAT 1 cut(s) 283
ErhI CCWWGG 2 cut(s) 75, 891
Esp3I CGTCTC 1 cut(s) 406
FaeI CATG 4 cut(s) 162, 546, 700, 724
FaqI GGGAC 4 cut(s) 221, 348, 503, 768
FatI CATG 4 cut(s) 158, 542, 696, 720
FauI CCCGC 1 cut(s) 774
FauNDI CATATG 1 cut(s) 943
FblI GTMKAC 2 cut(s) 519, 861
Fnu4HI GCNGC 3 cut(s) 163, 869, 915
FokI GGATG 3 cut(s) 167, 308, 449
Fsp4HI GCNGC 3 cut(s) 163, 869, 915
FspBI CTAG 2 cut(s) 50, 608
GluI GCNGC 3 cut(s) 163, 869, 915
GsaI CCCAGC 1 cut(s) 857
GsuI CTGGAG 1 cut(s) 811
HaeIII GGCC 3 cut(s) 483, 495, 797
HapII CCGG 3 cut(s) 241, 393, 1009
Hin1II CATG 4 cut(s) 162, 546, 700, 724
HincII GTYRAC 3 cut(s) 129, 520, 862
HindII GTYRAC 3 cut(s) 129, 520, 862
HindIII AAGCTT 2 cut(s) 174, 233
HinfI GANTC 1 cut(s) 858
HpaII CCGG 3 cut(s) 241, 393, 1009
HphI GGTGA 4 cut(s) 217, 522, 892, 893
Hpy166II GTNNAC 6 cut(s) 129, 458, 520, 614, 775, 862
Hpy188I TCNGA 3 cut(s) 256, 310, 936
Hpy188III TCNNGA 4 cut(s) 196, 377, 573, 828
Hpy8I GTNNAC 6 cut(s) 129, 458, 520, 614, 775, 862
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 4 cut(s) 50, 93, 480, 533
HpyCH4III ACNGT 2 cut(s) 462, 876
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 4 cut(s) 170, 281, 320, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 1014
HpyF3I CTNAG 2 cut(s) 231, 309
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 4 cut(s) 162, 546, 700, 724
Kzo9I GATC 2 cut(s) 509, 652
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 2 cut(s) 880, 901
LweI GCATC 5 cut(s) 157, 231, 268, 290, 427
MabI ACCWGGT 1 cut(s) 189
MaeI CTAG 2 cut(s) 50, 608
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 4 cut(s) 148, 265, 761, 989
MalI GATC 2 cut(s) 511, 654
MboI GATC 2 cut(s) 509, 652
MboII GAAGA 3 cut(s) 78, 896, 938
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 5 cut(s) 328, 664, 799, 805, 1012
MlyI GAGTC 1 cut(s) 867
MnlI CCTC 7 cut(s) 335, 538, 544, 569, 715, 727, 930
Mph1103I ATGCAT 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 3 cut(s) 241, 393, 1009
MspR9I CCNGG 6 cut(s) 133, 191, 212, 393, 433, 995
MvaI CCWGG 5 cut(s) 133, 191, 212, 433, 995
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 77, 1014
NciI CCSGG 1 cut(s) 393
NdeI CATATG 1 cut(s) 943
NdeII GATC 2 cut(s) 509, 652
NlaIII CATG 4 cut(s) 162, 546, 700, 724
NlaIV GGNNCC 5 cut(s) 81, 209, 397, 702, 796
NmuCI GTSAC 2 cut(s) 148, 761
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 930
PflFI GACNNNGTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 543
PkrI GCNGC 3 cut(s) 164, 870, 916
PleI GAGTC 1 cut(s) 866
PpsI GAGTC 1 cut(s) 866
Psp6I CCWGG 5 cut(s) 131, 189, 210, 431, 993
PspEI GGTNACC 1 cut(s) 989
PspFI CCCAGC 1 cut(s) 853
PspGI CCWGG 5 cut(s) 131, 189, 210, 431, 993
PspN4I GGNNCC 5 cut(s) 81, 209, 397, 702, 796
PspPI GGNCC 4 cut(s) 37, 208, 299, 795
PstNI CAGNNNCTG 1 cut(s) 874
PsyI GACNNNGTC 1 cut(s) 362
RsaI GTAC 2 cut(s) 288, 776
RsaNI GTAC 2 cut(s) 287, 775
SalI GTCGAC 2 cut(s) 518, 860
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 3 cut(s) 163, 869, 915
Sau3AI GATC 2 cut(s) 509, 652
Sau96I GGNCC 4 cut(s) 37, 208, 299, 795
ScaI AGTACT 1 cut(s) 288
SchI GAGTC 1 cut(s) 867
ScrFI CCNGG 6 cut(s) 133, 191, 212, 393, 433, 995
SduI GDGCHC 1 cut(s) 460
SexAI ACCWGGT 1 cut(s) 189
SfaNI GCATC 5 cut(s) 157, 231, 268, 290, 427
SinI GGWCC 3 cut(s) 37, 208, 299
Sse9I AATT 5 cut(s) 328, 664, 799, 805, 1012
SsiI CCGC 3 cut(s) 163, 228, 767
SspI AATATT 1 cut(s) 21
SspMI CTAG 2 cut(s) 50, 608
StyD4I CCNGG 6 cut(s) 131, 189, 210, 391, 431, 993
StyI CCWWGG 2 cut(s) 75, 891
TaaI ACNGT 2 cut(s) 462, 876
TaiI ACGT 1 cut(s) 366
TaqI TCGA 3 cut(s) 357, 519, 861
TasI AATT 5 cut(s) 328, 664, 799, 805, 1012
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TseFI GTSAC 2 cut(s) 148, 761
TseI GCWGC 2 cut(s) 868, 914
Tsp45I GTSAC 2 cut(s) 148, 761
TspDTI ATGAA 5 cut(s) 169, 343, 434, 531, 634
Tth111I GACNNNGTC 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 543
VneI GTGCAC 1 cut(s) 456
VpaK11BI GGWCC 3 cut(s) 37, 208, 299
XceI RCATGY 1 cut(s) 162
XmiI GTMKAC 2 cut(s) 519, 861
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 2 cut(s) 50, 608
ZrmI AGTACT 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.