Rmu_co8108400.1_g000001

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8108400.1
OG0015393
Physical Location & Seq
Forward (+)
80 .. 394
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8108400.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atgagaaagttatgcccaccaagaactacaaagggacagagtgacccgctggtgtacctaaacccccaatctggggccaattacaattttacacaatcctactactccagagttttatccaagaaagctgtgctgggagtcgaccagcagctactgtttggtgaagacaccaaggatatcaccgatgagtttgctgctggttttgaagattttcggaggtcatatgcttactcaatgagcagaatgggtgctatcaaggttttgacaggtaaccagggagagatacgccggaattgccgagttccaaaccactaa

Protein Analysis

104

Amino Acids

11.82

Weight (kDa)

9.43

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43480 AT5G24070
fragaria_vesca FvH4_3g26850
malus_domestica MD04G1046400.v1.1
prunus_persica Prupe.1G199900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407891
rosa_laevigata RLG00000008691
rosa_multiflora Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii Rroxscaffold_5G00352430
rosa_rugosa Rorug04G0082000
rosa_samantha Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana Rw4G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AciI CCGC 1 cut(s) 47
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 3 cut(s) 71, 72, 73
AgsI TTSAA 1 cut(s) 206
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 2 cut(s) 128, 151
AluI AGCT 2 cut(s) 128, 151
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 148, 194
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 172, 173
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 160, 181
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 275
BisI GCNGC 2 cut(s) 149, 195
BlsI GCNGC 2 cut(s) 150, 196
Bme1390I CCNGG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 171, 274
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 72, 73
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 2 cut(s) 171, 274
BseLI CCNNNNNNNGG 3 cut(s) 71, 72, 73
BseXI GCAGC 2 cut(s) 160, 181
BseYI CCCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 3 cut(s) 71, 72, 73
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 1 cut(s) 77
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 171, 274
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNI CCWGG 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 160, 181
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 77
CaiI CAGNNNCTG 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 3 cut(s) 77, 128, 151
CviKI_1 RGCY 3 cut(s) 77, 128, 151
CviQI GTAC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 171
Eco32I GATATC 1 cut(s) 178
Eco91I GGTNACC 1 cut(s) 269
EcoO65I GGTNACC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 273
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaiI YATR 3 cut(s) 13, 223, 225
FaqI GGGAC 1 cut(s) 48
FauI CCCGC 1 cut(s) 54
FauNDI CATATG 1 cut(s) 223
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 149, 195
Fsp4HI GCNGC 2 cut(s) 149, 195
GluI GCNGC 2 cut(s) 149, 195
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 289
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 289
HphI GGTGA 2 cut(s) 172, 173
Hpy166II GTNNAC 2 cut(s) 55, 142
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 2 cut(s) 55, 142
HpyCH4III ACNGT 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
Lsp1109I GCAGC 2 cut(s) 160, 181
MaeIII GTNAC 2 cut(s) 41, 269
MboII GAAGA 2 cut(s) 176, 218
MluCI AATT 3 cut(s) 79, 85, 292
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 294
NdeI CATATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 210
PkrI GCNGC 2 cut(s) 150, 196
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 273
PspEI GGTNACC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SalI GTCGAC 1 cut(s) 140
SatI GCNGC 2 cut(s) 149, 195
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 275
SetI ASST 6 cut(s) 60, 130, 153, 221, 261, 271
Sse9I AATT 3 cut(s) 79, 85, 292
SsiI CCGC 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 79, 85, 292
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 148, 194
Tsp45I GTSAC 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.