Rroxscaffold_5G00352430

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015393
Physical Location & Seq
Reverse (-)
29443168 .. 29444819
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352430.1

Sequence Viewer

Length: 1041 bp
ATGACAAGAAACCAAAGAATATTTGTGTTTCTTATTGCGGTCCTTCCACTTCTAGTGTCTGTGTGTTCATCGGCGACCTCGGCTCCTTCTTCAAAACCACCACCACCACCGCCACCACCACAGCAAAACAAGTTGACCTGGCATTACTATAAAGTCACTAACACATGCCGCGATGCAGAAGCTTTCATCCAGCACCAGGTCAAGAAGTTTTGGGACCAGGATAAAAGCATCACCGCTAAGCTTCTCCGGTTGCTCTACTCTGACTGCTTCGTAACTGGTTGTGATGCATCAGTACTGCTGGATGGTCCAAACTCTGAGAAAACTGCACCGCAGAATTGGGGACTGGGAGGTTTCTATTTCATCGACAACGTCAAAAAAGTTCTTGAACATTACTGCCCCGGTGCCGTCTCGTGTGCTGATATTCTCAACCTTGCCACTAGGGATGCTGTTCATTTGGCAGGTGCACCGTCTTATCCTGTTCTTACGGGCCGAAGGGACGGTCTAACATCAAGCAGATCATCAGTCGACCTTCCCTCACCCTCCATTTCATGGCAGGCTTCACTTGATTACTTCAAATCCAGAGGCTTGAATGTATTGGATATGACTACTCTACTAGGTTCACATTCAATGGGTAAAACACATTGTCGCTTCATTTTGGATCGGCTCTACAATTTTAATGGCACAAATAAGCCAGACCCAAGCATGGAACCCTCATTCTTATCCTCGATGAGAAAGTTATGCCCACCAAGAACTACAAAGGGACAGAGTGACCCGCTGGTGTACCTAAACCCACAATCTGGGGCCAATTACAATTTTACACAATCCTACTACTCCAGAGTTTTATCCAAGAAAGCTGTGCTGGGAGTCGACCAGCAGCTACTGTTTGGTGAAGACACCAAGGATATCACCGATGAGTTTGCTGCTGGTTTTGAAGATTTTCGGAGGTCATATGCTTACTCAATGAGCAGAATGGGTGCTATCAAGGTTTTGACAGGTAACCAGGGAGAGATACGCCGGAATTGCCGGGTTCCAAACCACTAA

Protein Analysis

346

Amino Acids

38.53

Weight (kDa)

9.12

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 64 - 308 1.9e-70 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43480 AT5G24070
fragaria_vesca FvH4_3g26850
malus_domestica MD04G1046400.v1.1
prunus_persica Prupe.1G199900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407891
rosa_laevigata RLG00000008691
rosa_multiflora Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii Rroxscaffold_5G00352430
rosa_rugosa Rorug04G0082000
rosa_samantha Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana Rw4G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 449
Acc36I ACCTGC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 401
AccB7I CCANNNNNTGG 2 cut(s) 549, 797
AccI GTMKAC 2 cut(s) 525, 867
AccII CGCG 1 cut(s) 171
AciI CCGC 6 cut(s) 38, 110, 169, 234, 329, 773
AclWI GGATC 1 cut(s) 666
AfaI GTAC 2 cut(s) 294, 782
AfiI CCNNNNNNNGG 4 cut(s) 196, 549, 703, 797
AgsI TTSAA 6 cut(s) 93, 386, 574, 589, 627, 932
AjnI CCWGG 4 cut(s) 137, 195, 216, 999
AluBI AGCT 4 cut(s) 182, 241, 854, 877
AluI AGCT 4 cut(s) 182, 241, 854, 877
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 1 cut(s) 412
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 1 cut(s) 666
AlwNI CAGNNNCTG 1 cut(s) 880
AoxI GGCC 2 cut(s) 487, 801
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 874, 920
ArsI GACNNNNNNTTYG 2 cut(s) 484, 516
Asp700I GAANNNNTTC 1 cut(s) 936
AspS9I GGNCC 5 cut(s) 40, 214, 305, 487, 801
AsuC2I CCSGG 2 cut(s) 399, 1025
AsuHPI GGTGA 4 cut(s) 223, 528, 898, 899
AvaII GGWCC 3 cut(s) 40, 214, 305
BaeGI GKGCMC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 401
BauI CACGAG 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 886, 907
BccI CCATC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 389
BcgI CGANNNNNNTGC 2 cut(s) 899, 933
BciT130I CCWGG 4 cut(s) 139, 197, 218, 1001
BcnI CCSGG 2 cut(s) 399, 1025
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 3 cut(s) 53, 438, 614
BfuAI ACCTGC 1 cut(s) 449
BisI GCNGC 3 cut(s) 169, 875, 921
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 3 cut(s) 170, 876, 922
BmcAI AGTACT 1 cut(s) 294
Bme1390I CCNGG 6 cut(s) 139, 197, 218, 399, 1001, 1025
Bme18I GGWCC 3 cut(s) 40, 214, 305
BmgT120I GGNCC 5 cut(s) 40, 214, 305, 487, 801
BmiI GGNNCC 6 cut(s) 84, 215, 403, 708, 802, 1029
BmrFI CCNGG 6 cut(s) 139, 197, 218, 399, 1001, 1025
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 5 cut(s) 163, 237, 274, 296, 433
BmuI ACTGGG 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 897
BpmI CTGGAG 1 cut(s) 817
Bpu1102I GCTNAGC 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 399, 1025
BsaJI CCNNGG 4 cut(s) 78, 397, 897, 1000
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 549, 703, 797
Bse1I ACTGG 2 cut(s) 280, 348
BseBI CCWGG 4 cut(s) 139, 197, 218, 1001
BseDI CCNNGG 4 cut(s) 78, 397, 897, 1000
BseGI GGATG 3 cut(s) 186, 307, 448
BseLI CCNNNNNNNGG 4 cut(s) 196, 549, 703, 797
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 280, 348
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 2 cut(s) 886, 907
BseYI CCCAGC 1 cut(s) 859
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 489, 803
BshNI GGYRCC 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 4 cut(s) 247, 399, 1015, 1024
BslFI GGGAC 4 cut(s) 227, 354, 509, 774
BslI CCNNNNNNNGG 4 cut(s) 196, 549, 703, 797
BsmAI GTCTC 1 cut(s) 412
BsmBI CGTCTC 1 cut(s) 412
BsmFI GGGAC 4 cut(s) 227, 354, 509, 774
BsnI GGCC 2 cut(s) 489, 803
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 2 cut(s) 515, 658
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 6 cut(s) 38, 110, 169, 234, 329, 773
BspANI GGCC 2 cut(s) 489, 803
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 6 cut(s) 84, 215, 403, 708, 802, 1029
BspMI ACCTGC 1 cut(s) 449
BspPI GGATC 1 cut(s) 666
BspT107I GGYRCC 1 cut(s) 401
BsrI ACTGG 2 cut(s) 280, 348
BssECI CCNNGG 4 cut(s) 78, 397, 897, 1000
BssMI GATC 2 cut(s) 515, 658
BssSI CACGAG 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 897
Bst2BI CACGAG 1 cut(s) 409
Bst2UI CCWGG 4 cut(s) 139, 197, 218, 1001
Bst4CI ACNGT 3 cut(s) 468, 500, 882
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 2 cut(s) 237, 315
BstEII GGTNACC 1 cut(s) 995
BstF5I GGATG 3 cut(s) 186, 307, 448
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 2 cut(s) 518, 661
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 2 cut(s) 515, 658
BstMWI GCNNNNNNNGC 2 cut(s) 80, 1020
BstNI CCWGG 4 cut(s) 139, 197, 218, 1001
BstNSI RCATGY 1 cut(s) 168
BstPI GGTNACC 1 cut(s) 995
BstSCI CCNGG 6 cut(s) 137, 195, 216, 397, 999, 1023
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 886, 907
BstV2I GAAGAC 1 cut(s) 897
BsuRI GGCC 2 cut(s) 489, 803
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 3 cut(s) 186, 307, 448
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 555
CaiI CAGNNNCTG 1 cut(s) 880
Cfr13I GGNCC 5 cut(s) 40, 214, 305, 487, 801
CsiI ACCWGGT 1 cut(s) 195
Csp6I GTAC 2 cut(s) 293, 781
CviAII CATG 3 cut(s) 165, 549, 703
CviQI GTAC 2 cut(s) 293, 781
DdeI CTNAG 2 cut(s) 237, 315
DpnI GATC 2 cut(s) 517, 660
DpnII GATC 2 cut(s) 515, 658
Eco130I CCWWGG 1 cut(s) 897
Eco32I GATATC 1 cut(s) 904
Eco47I GGWCC 3 cut(s) 40, 214, 305
Eco91I GGTNACC 1 cut(s) 995
EcoO65I GGTNACC 1 cut(s) 995
EcoRII CCWGG 4 cut(s) 137, 195, 216, 999
EcoRV GATATC 1 cut(s) 904
EcoT14I CCWWGG 1 cut(s) 897
EcoT22I ATGCAT 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 897
Esp3I CGTCTC 1 cut(s) 412
FaeI CATG 3 cut(s) 168, 552, 706
FaiI YATR 8 cut(s) 150, 166, 550, 602, 704, 739, 949, 951
FaqI GGGAC 4 cut(s) 227, 354, 509, 774
FatI CATG 3 cut(s) 164, 548, 702
FauI CCCGC 1 cut(s) 780
FauNDI CATATG 1 cut(s) 949
FblI GTMKAC 2 cut(s) 525, 867
Fnu4HI GCNGC 3 cut(s) 169, 875, 921
FokI GGATG 3 cut(s) 173, 314, 455
Fsp4HI GCNGC 3 cut(s) 169, 875, 921
FspBI CTAG 3 cut(s) 53, 438, 614
GluI GCNGC 3 cut(s) 169, 875, 921
GsaI CCCAGC 1 cut(s) 863
GsuI CTGGAG 1 cut(s) 817
HaeIII GGCC 2 cut(s) 489, 803
HapII CCGG 4 cut(s) 247, 399, 1015, 1024
Hin1II CATG 3 cut(s) 168, 552, 706
HincII GTYRAC 3 cut(s) 135, 526, 868
HindII GTYRAC 3 cut(s) 135, 526, 868
HindIII AAGCTT 2 cut(s) 180, 239
HinfI GANTC 1 cut(s) 864
HpaII CCGG 4 cut(s) 247, 399, 1015, 1024
HphI GGTGA 4 cut(s) 223, 528, 898, 899
Hpy166II GTNNAC 6 cut(s) 135, 464, 526, 620, 781, 868
Hpy188I TCNGA 3 cut(s) 262, 316, 942
Hpy188III TCNNGA 4 cut(s) 202, 383, 579, 834
Hpy8I GTNNAC 6 cut(s) 135, 464, 526, 620, 781, 868
HpyAV CCTTC 4 cut(s) 53, 96, 486, 539
HpyCH4III ACNGT 3 cut(s) 468, 500, 882
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 176, 287, 326, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 1020
HpyF3I CTNAG 2 cut(s) 237, 315
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 3 cut(s) 168, 552, 706
Kzo9I GATC 2 cut(s) 515, 658
LmnI GCTCC 1 cut(s) 88
Lsp1109I GCAGC 2 cut(s) 886, 907
LweI GCATC 5 cut(s) 163, 237, 274, 296, 433
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 3 cut(s) 53, 438, 614
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 4 cut(s) 154, 271, 767, 995
MalI GATC 2 cut(s) 517, 660
MboI GATC 2 cut(s) 515, 658
MboII GAAGA 3 cut(s) 81, 902, 944
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 5 cut(s) 334, 670, 805, 811, 1018
MlyI GAGTC 1 cut(s) 873
MnlI CCTC 8 cut(s) 88, 341, 544, 550, 575, 721, 733, 936
Mph1103I ATGCAT 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 936
MseI TTAA 1 cut(s) 675
MspA1I CMGCKG 1 cut(s) 775
MspI CCGG 4 cut(s) 247, 399, 1015, 1024
MspR9I CCNGG 6 cut(s) 139, 197, 218, 399, 1001, 1025
MvaI CCWGG 4 cut(s) 139, 197, 218, 1001
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 80, 1020
NciI CCSGG 2 cut(s) 399, 1025
NdeI CATATG 1 cut(s) 949
NdeII GATC 2 cut(s) 515, 658
NlaIII CATG 3 cut(s) 168, 552, 706
NlaIV GGNNCC 6 cut(s) 84, 215, 403, 708, 802, 1029
NmeAIII GCCGAG 1 cut(s) 59
NmuCI GTSAC 2 cut(s) 154, 767
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 449
PdmI GAANNNNTTC 1 cut(s) 936
PflFI GACNNNGTC 1 cut(s) 368
PflMI CCANNNNNTGG 2 cut(s) 549, 797
PkrI GCNGC 3 cut(s) 170, 876, 922
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
Psp6I CCWGG 4 cut(s) 137, 195, 216, 999
PspEI GGTNACC 1 cut(s) 995
PspFI CCCAGC 1 cut(s) 859
PspGI CCWGG 4 cut(s) 137, 195, 216, 999
PspN4I GGNNCC 6 cut(s) 84, 215, 403, 708, 802, 1029
PspPI GGNCC 5 cut(s) 40, 214, 305, 487, 801
PstNI CAGNNNCTG 1 cut(s) 880
PsyI GACNNNGTC 1 cut(s) 368
RsaI GTAC 2 cut(s) 294, 782
RsaNI GTAC 2 cut(s) 293, 781
SalI GTCGAC 2 cut(s) 524, 866
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 3 cut(s) 169, 875, 921
Sau3AI GATC 2 cut(s) 515, 658
Sau96I GGNCC 5 cut(s) 40, 214, 305, 487, 801
ScaI AGTACT 1 cut(s) 294
SchI GAGTC 1 cut(s) 873
ScrFI CCNGG 6 cut(s) 139, 197, 218, 399, 1001, 1025
SduI GDGCHC 1 cut(s) 466
SexAI ACCWGGT 1 cut(s) 195
SfaNI GCATC 5 cut(s) 163, 237, 274, 296, 433
SinI GGWCC 3 cut(s) 40, 214, 305
Sse9I AATT 5 cut(s) 334, 670, 805, 811, 1018
SsiI CCGC 6 cut(s) 38, 110, 169, 234, 329, 773
SspI AATATT 1 cut(s) 21
SspMI CTAG 3 cut(s) 53, 438, 614
StyD4I CCNGG 6 cut(s) 137, 195, 216, 397, 999, 1023
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 3 cut(s) 468, 500, 882
TaiI ACGT 1 cut(s) 372
TaqI TCGA 4 cut(s) 363, 525, 725, 867
TasI AATT 5 cut(s) 334, 670, 805, 811, 1018
TatI WGTACW 1 cut(s) 292
TauI GCSGC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TseFI GTSAC 2 cut(s) 154, 767
TseI GCWGC 2 cut(s) 874, 920
Tsp45I GTSAC 2 cut(s) 154, 767
TspDTI ATGAA 6 cut(s) 57, 175, 349, 440, 537, 640
Tth111I GACNNNGTC 1 cut(s) 368
Van91I CCANNNNNTGG 2 cut(s) 549, 797
VneI GTGCAC 1 cut(s) 462
VpaK11BI GGWCC 3 cut(s) 40, 214, 305
XceI RCATGY 1 cut(s) 168
XmiI GTMKAC 2 cut(s) 525, 867
XmnI GAANNNNTTC 1 cut(s) 936
XspI CTAG 3 cut(s) 53, 438, 614
ZrmI AGTACT 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.