AT5G24070

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015393
Physical Location & Seq
Reverse (-)
8134172 .. 8136150
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24070.1

Sequence Viewer

Length: 1023 bp
ATGCAGTTTGTGAATTTTTTCCCACTATTGGCCCTCGTAGTCATAAGCTTAGCCGGAAAGGCTACGGTAGAGGCTGCGACGGGATTGAACCCTCCGGTGAAGCTTGTCTGGCATTATTACAAACTTACTAACACTTGTGATGATGCAGAGACTTATATTAGATACCAAGTTGAAAAGTTTTATAAGAATGATAGTAGCATTGCCCCAAAGCTGCTTCGTCTCCTCTACTCCGATTGTATGGTTAATGGATGTGATGGTTCGATTCTTTTGCAAGGACCAAACTCAGAGAGGACAGCTCCACAGAATCGAGGGCTTGGAGGTTTTGTGATAATCGATAAAATAAAGCAAGTTCTTGAATCACGTTGTCCTGGTGTCGTTTCTTGCGCTGATATCCTCAACCTTGCCACTAGAGATGCTGTTCACATGGCCGGAGCACCGTCTTATCCTGTGTTTACGGGGAGAAGGGACGGTGGGACATTAAATGCAGACGCCGTAGATCTGCCGTCACCGTCCATCTCAGTCGATGAGTCATTGGCATATTTCAAGTCCAAAGGTCTTGACGTTTTGGATATGACTACTCTTCTAGGAGCACACTCAATGGGGAAGACACATTGTAGCTACGTAGTGGACAGACTATACAACTTCAAGAACACAGGGAAACCAGATCCGACCATGAACACGACATTGGTGTCACAACTTCGATATCTTTGTCCTCCAAGAACACAAAAGGGCCAAACCGATCCACTGGTTTACCTAAATCCAGACTCAGGCTCGAGCAACAGATTCACAAGCTCATACTACTCTCGTGTCTTGTCTCATAACGCTGTTTTACGGGTGGACCAAGAGTTGCTCAACAACGATGACTCGAAGGAGATCACGCAAGAGTTTGCTTCCGGTTTTGAAGATTTCAGAAAGTCTTTTGCTTTGGCAATGTCGAGAATGGGATCTATCAATGTTTTGACGGGAACAGCTGGAGAGATTCGTCGAGACTGCAGAGTTACCAACGCTAATGACGGGGCCTAA

Protein Analysis

340

Amino Acids

37.31

Weight (kDa)

6.94

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 54 - 298 2e-74 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43480 AT5G24070
fragaria_vesca FvH4_3g26850
malus_domestica MD04G1046400.v1.1
prunus_persica Prupe.1G199900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407891
rosa_laevigata RLG00000008691
rosa_multiflora Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii Rroxscaffold_5G00352430
rosa_rugosa Rorug04G0082000
rosa_samantha Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana Rw4G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AasI GACNNNNNNGTC 1 cut(s) 688
AclWI GGATC 3 cut(s) 659, 734, 952
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 489
AfiI CCNNNNNNNGG 2 cut(s) 28, 767
AgsI TTSAA 6 cut(s) 88, 173, 356, 544, 646, 902
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 7 cut(s) 48, 103, 211, 296, 618, 792, 971
AluI AGCT 7 cut(s) 48, 103, 211, 296, 618, 792, 971
Alw21I GWGCWC 2 cut(s) 436, 592
Alw26I GTCTC 4 cut(s) 143, 224, 819, 981
AlwI GGATC 3 cut(s) 659, 734, 952
Ama87I CYCGRG 1 cut(s) 772
AoxI GGCC 4 cut(s) 30, 426, 730, 1017
ApeKI GCWGC 2 cut(s) 74, 211
ApoI RAATTY 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 5 cut(s) 31, 275, 730, 838, 1017
AsuHPI GGTGA 2 cut(s) 109, 498
AvaI CYCGRG 1 cut(s) 772
AvaII GGWCC 2 cut(s) 275, 838
BauI CACGAG 1 cut(s) 804
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 2 cut(s) 436, 592
BbvI GCAGC 2 cut(s) 61, 198
BccI CCATC 2 cut(s) 248, 521
BceAI ACGGC 2 cut(s) 476, 487
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 4 cut(s) 143, 224, 819, 981
BfaI CTAG 2 cut(s) 408, 584
BfmI CTRYAG 1 cut(s) 991
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 496
BisI GCNGC 2 cut(s) 75, 212
BlpI GCTNAGC 1 cut(s) 49
BlsI GCNGC 2 cut(s) 76, 213
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 2 cut(s) 275, 838
BmeT110I CYCGRG 1 cut(s) 772
BmgT120I GGNCC 5 cut(s) 31, 275, 730, 838, 1017
BmiI GGNNCC 1 cut(s) 1018
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 133, 403
BpiI GAAGAC 1 cut(s) 611
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpmI CTGGAG 1 cut(s) 993
Bpu1102I GCTNAGC 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 622
BsaHI GRCGYC 1 cut(s) 489
BsaWI WCCGGW 2 cut(s) 94, 893
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 767
Bse1I ACTGG 1 cut(s) 750
Bse3DI GCAATG 2 cut(s) 198, 936
BseBI CCWGG 1 cut(s) 369
BseCI ATCGAT 1 cut(s) 333
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 28, 767
BseMI GCAATG 2 cut(s) 198, 936
BseMII CTCAG 3 cut(s) 297, 531, 780
BseNI ACTGG 1 cut(s) 750
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 61, 198
BshFI GGCC 4 cut(s) 32, 428, 732, 1019
BshVI ATCGAT 1 cut(s) 333
BsiHKAI GWGCWC 2 cut(s) 436, 592
BsiHKCI CYCGRG 1 cut(s) 772
BsiSI CCGG 4 cut(s) 54, 95, 429, 894
BslFI GGGAC 2 cut(s) 479, 487
BslI CCNNNNNNNGG 2 cut(s) 28, 767
BsmAI GTCTC 4 cut(s) 143, 224, 819, 981
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 479, 487
BsnI GGCC 4 cut(s) 32, 428, 732, 1019
BsoBI CYCGRG 1 cut(s) 772
Bsp1286I GDGCHC 2 cut(s) 436, 592
Bsp143I GATC 5 cut(s) 496, 664, 739, 873, 944
Bsp1720I GCTNAGC 1 cut(s) 49
BspANI GGCC 4 cut(s) 32, 428, 732, 1019
BspCNI CTCAG 3 cut(s) 296, 530, 779
BspDI ATCGAT 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 1018
BspMAI CTGCAG 1 cut(s) 995
BspPI GGATC 3 cut(s) 659, 734, 952
BsrDI GCAATG 2 cut(s) 198, 936
BsrI ACTGG 1 cut(s) 750
BssMI GATC 5 cut(s) 496, 664, 739, 873, 944
BssNI GRCGYC 1 cut(s) 489
BssSI CACGAG 1 cut(s) 804
Bst2BI CACGAG 1 cut(s) 804
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 4 cut(s) 67, 438, 470, 510
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 622
BstDEI CTNAG 4 cut(s) 49, 283, 517, 766
BstF5I GGATG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 5 cut(s) 499, 667, 742, 876, 947
BstMAI GTCTC 4 cut(s) 143, 224, 819, 981
BstMBI GATC 5 cut(s) 496, 664, 739, 873, 944
BstMWI GCNNNNNNNGC 2 cut(s) 59, 109
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 991
BstSNI TACGTA 1 cut(s) 622
BstV1I GCAGC 2 cut(s) 61, 198
BstV2I GAAGAC 1 cut(s) 611
BstX2I RGATCY 3 cut(s) 496, 664, 944
BstYI RGATCY 3 cut(s) 496, 664, 944
Bsu15I ATCGAT 1 cut(s) 333
BsuRI GGCC 4 cut(s) 32, 428, 732, 1019
BsuTUI ATCGAT 1 cut(s) 333
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 743
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 5 cut(s) 31, 275, 730, 838, 1017
ClaI ATCGAT 1 cut(s) 333
CseI GACGC 1 cut(s) 497
CviAII CATG 2 cut(s) 424, 673
DdeI CTNAG 4 cut(s) 49, 283, 517, 766
DpnI GATC 5 cut(s) 498, 666, 741, 875, 946
DpnII GATC 5 cut(s) 496, 664, 739, 873, 944
DrdI GACNNNNNNGTC 1 cut(s) 688
DseDI GACNNNNNNGTC 1 cut(s) 688
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco105I TACGTA 1 cut(s) 622
Eco32I GATATC 2 cut(s) 391, 704
Eco47I GGWCC 2 cut(s) 275, 838
Eco88I CYCGRG 1 cut(s) 772
EcoO109I RGGNCCY 1 cut(s) 1017
EcoRII CCWGG 1 cut(s) 367
EcoRV GATATC 2 cut(s) 391, 704
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 2 cut(s) 427, 676
FaqI GGGAC 2 cut(s) 479, 487
FatI CATG 2 cut(s) 423, 672
Fnu4HI GCNGC 2 cut(s) 75, 212
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 75, 212
FspBI CTAG 2 cut(s) 408, 584
GlaI GCGC 1 cut(s) 385
GluI GCNGC 2 cut(s) 75, 212
GsuI CTGGAG 1 cut(s) 993
HaeIII GGCC 4 cut(s) 32, 428, 732, 1019
HapII CCGG 4 cut(s) 54, 95, 429, 894
HgaI GACGC 1 cut(s) 497
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 2 cut(s) 427, 676
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HindIII AAGCTT 2 cut(s) 46, 101
HinfI GANTC 8 cut(s) 262, 304, 356, 527, 764, 783, 863, 979
HpaII CCGG 4 cut(s) 54, 95, 429, 894
HphI GGTGA 2 cut(s) 109, 498
Hpy166II GTNNAC 5 cut(s) 421, 453, 628, 751, 838
Hpy188I TCNGA 4 cut(s) 232, 286, 669, 911
Hpy188III TCNNGA 6 cut(s) 353, 557, 646, 761, 936, 986
Hpy8I GTNNAC 5 cut(s) 421, 453, 628, 751, 838
Hpy99I CGWCG 2 cut(s) 82, 987
HpyAV CCTTC 2 cut(s) 456, 862
HpyCH4III ACNGT 4 cut(s) 67, 438, 470, 510
HpyCH4IV ACGT 3 cut(s) 361, 561, 621
HpyCH4V TGCA 5 cut(s) 4, 146, 271, 485, 993
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 109
HpyF3I CTNAG 4 cut(s) 49, 283, 517, 766
HpySE526I ACGT 3 cut(s) 361, 561, 621
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 2 cut(s) 427, 676
HspAI GCGC 1 cut(s) 384
Kzo9I GATC 5 cut(s) 496, 664, 739, 873, 944
LmnI GCTCC 3 cut(s) 301, 431, 587
Lsp1109I GCAGC 2 cut(s) 61, 198
LweI GCATC 2 cut(s) 133, 403
MaeI CTAG 2 cut(s) 408, 584
MaeII ACGT 3 cut(s) 361, 561, 621
MaeIII GTNAC 3 cut(s) 504, 690, 997
MalI GATC 5 cut(s) 498, 666, 741, 875, 946
MboI GATC 5 cut(s) 496, 664, 739, 873, 944
MboII GAAGA 3 cut(s) 572, 616, 914
MflI RGATCY 3 cut(s) 496, 664, 944
MhlI GDGCHC 2 cut(s) 436, 592
MluCI AATT 1 cut(s) 13
MlyI GAGTC 3 cut(s) 536, 758, 857
MmeI TCCRAC 1 cut(s) 692
MnlI CCTC 9 cut(s) 44, 64, 102, 233, 282, 302, 311, 404, 723
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 2 cut(s) 243, 479
MspA1I CMGCKG 1 cut(s) 971
MspI CCGG 4 cut(s) 54, 95, 429, 894
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 2 cut(s) 59, 109
NdeII GATC 5 cut(s) 496, 664, 739, 873, 944
NlaIII CATG 2 cut(s) 427, 676
NlaIV GGNNCC 1 cut(s) 1018
NmuCI GTSAC 2 cut(s) 504, 690
PaeR7I CTCGAG 1 cut(s) 772
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 5 cut(s) 262, 304, 356, 783, 979
PkrI GCNGC 2 cut(s) 76, 213
PleI GAGTC 3 cut(s) 535, 758, 857
PpsI GAGTC 3 cut(s) 535, 758, 857
Ppu21I YACGTR 1 cut(s) 622
PsiI TTATAA 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 1018
PspPI GGNCC 5 cut(s) 31, 275, 730, 838, 1017
PspXI VCTCGAGB 1 cut(s) 772
PstI CTGCAG 1 cut(s) 995
PsuI RGATCY 3 cut(s) 496, 664, 944
PvuII CAGCTG 1 cut(s) 971
SaqAI TTAA 2 cut(s) 243, 479
SatI GCNGC 2 cut(s) 75, 212
Sau3AI GATC 5 cut(s) 496, 664, 739, 873, 944
Sau96I GGNCC 5 cut(s) 31, 275, 730, 838, 1017
SchI GAGTC 3 cut(s) 536, 758, 857
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 2 cut(s) 436, 592
SfaNI GCATC 2 cut(s) 133, 403
SfcI CTRYAG 1 cut(s) 991
Sfr274I CTCGAG 1 cut(s) 772
SinI GGWCC 2 cut(s) 275, 838
SlaI CTCGAG 1 cut(s) 772
SmlI CTYRAG 1 cut(s) 772
SmoI CTYRAG 1 cut(s) 772
SnaBI TACGTA 1 cut(s) 622
Sse9I AATT 1 cut(s) 13
SspMI CTAG 2 cut(s) 408, 584
StyD4I CCNGG 1 cut(s) 367
TaaI ACNGT 4 cut(s) 67, 438, 470, 510
TaiI ACGT 3 cut(s) 364, 564, 624
TaqI TCGA 9 cut(s) 260, 307, 333, 522, 700, 773, 866, 935, 985
TasI AATT 1 cut(s) 13
TfiI GAWTC 5 cut(s) 262, 304, 356, 783, 979
Tru1I TTAA 2 cut(s) 243, 479
Tru9I TTAA 2 cut(s) 243, 479
TscAI CASTG 1 cut(s) 750
TseFI GTSAC 2 cut(s) 504, 690
TseI GCWGC 2 cut(s) 74, 211
Tsp45I GTSAC 2 cut(s) 504, 690
TspDTI ATGAA 1 cut(s) 689
TspRI CASTG 1 cut(s) 750
VpaK11BI GGWCC 2 cut(s) 275, 838
XapI RAATTY 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 772
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 2 cut(s) 408, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.